Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:107461846-107631890

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pitpnc1 11 107207892 to 107470699 262807 - protein coding gene phosphatidylinositol transfer protein, cytoplasmic 1
Tssr111464 11 107462062 to 107462067 5 - TSS region transcription start site region 111464
Tssr111465 11 107466219 to 107466223 4 - TSS region transcription start site region 111465
Cpgi4037 11 107468996 to 107471024 2028 CpG island CpG island 4037
Tssr111466 11 107469561 to 107469584 23 - TSS region transcription start site region 111466
Tssr111467 11 107470061 to 107470076 15 - TSS region transcription start site region 111467
Tssr111468 11 107470713 to 107470726 13 - TSS region transcription start site region 111468
Tssr111469 11 107470740 to 107470755 15 - TSS region transcription start site region 111469
Tssr111470 11 107470759 to 107470777 18 - TSS region transcription start site region 111470
Tssr111471 11 107470787 to 107470798 11 - TSS region transcription start site region 111471
Tssr105587 11 107470899 to 107470905 6 + TSS region transcription start site region 105587
Cpgi4038 11 107479342 to 107480006 664 CpG island CpG island 4038
Tssr105588 11 107479478 to 107479544 66 + TSS region transcription start site region 105588
Psmd12 11 107479528 to 107498036 18508 + protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 12
Tssr105589 11 107479549 to 107479565 16 + TSS region transcription start site region 105589
Gm11722 11 107481916 to 107483107 1191 + sense intronic lncRNA gene predicted gene 11722
C330019F10Rik 11 107511403 to 107527220 15817 - lincRNA gene RIKEN cDNA C330019F10 gene
A830035A12Rik 11 107526506 to 107534143 7637 - unclassified non-coding RNA gene RIKEN cDNA A830035A12 gene
Gm11649 11 107531931 to 107532305 374 - pseudogene predicted gene 11649
Gm39426 11 107545392 to 107547289 1897 - lncRNA gene predicted gene, 39426
Cpgi4039 11 107546704 to 107548710 2006 CpG island CpG island 4039
Tssr105590 11 107546846 to 107546890 44 + TSS region transcription start site region 105590
Tssr105591 11 107546902 to 107546923 21 + TSS region transcription start site region 105591
Tssr105592 11 107546932 to 107546976 44 + TSS region transcription start site region 105592
Tssr105593 11 107547925 to 107547959 34 + TSS region transcription start site region 105593
Helz 11 107547930 to 107693826 145896 + protein coding gene helicase with zinc finger domain
Tssr105594 11 107548835 to 107548841 6 + TSS region transcription start site region 105594
Tssr111472 11 107574522 to 107574523 1 - TSS region transcription start site region 111472
Tssr105595 11 107593823 to 107593826 3 + TSS region transcription start site region 105595