Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:107444741-108144755

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pitpnc1 11 107207892 to 107470699 262807 - protein coding gene phosphatidylinositol transfer protein, cytoplasmic 1
Tssr111462 11 107454638 to 107454655 17 - TSS region transcription start site region 111462
Tssr111463 11 107454768 to 107454783 15 - TSS region transcription start site region 111463
Tssr111464 11 107462062 to 107462067 5 - TSS region transcription start site region 111464
Tssr111465 11 107466219 to 107466223 4 - TSS region transcription start site region 111465
Cpgi4037 11 107468996 to 107471024 2028 CpG island CpG island 4037
Tssr111466 11 107469561 to 107469584 23 - TSS region transcription start site region 111466
Tssr111467 11 107470061 to 107470076 15 - TSS region transcription start site region 111467
Tssr111468 11 107470713 to 107470726 13 - TSS region transcription start site region 111468
Tssr111469 11 107470740 to 107470755 15 - TSS region transcription start site region 111469
Tssr111470 11 107470759 to 107470777 18 - TSS region transcription start site region 111470
Tssr111471 11 107470787 to 107470798 11 - TSS region transcription start site region 111471
Tssr105587 11 107470899 to 107470905 6 + TSS region transcription start site region 105587
Cpgi4038 11 107479342 to 107480006 664 CpG island CpG island 4038
Tssr105588 11 107479478 to 107479544 66 + TSS region transcription start site region 105588
Psmd12 11 107479528 to 107498036 18508 + protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 12
Tssr105589 11 107479549 to 107479565 16 + TSS region transcription start site region 105589
Gm11722 11 107481916 to 107483107 1191 + sense intronic lncRNA gene predicted gene 11722
C330019F10Rik 11 107511403 to 107527220 15817 - lincRNA gene RIKEN cDNA C330019F10 gene
A830035A12Rik 11 107526506 to 107534143 7637 - unclassified non-coding RNA gene RIKEN cDNA A830035A12 gene
Gm11649 11 107531931 to 107532305 374 - pseudogene predicted gene 11649
Gm39426 11 107545392 to 107547289 1897 - lncRNA gene predicted gene, 39426
Cpgi4039 11 107546704 to 107548710 2006 CpG island CpG island 4039
Tssr105590 11 107546846 to 107546890 44 + TSS region transcription start site region 105590
Tssr105591 11 107546902 to 107546923 21 + TSS region transcription start site region 105591
Tssr105592 11 107546932 to 107546976 44 + TSS region transcription start site region 105592
Tssr105593 11 107547925 to 107547959 34 + TSS region transcription start site region 105593
Helz 11 107547930 to 107693826 145896 + protein coding gene helicase with zinc finger domain
Tssr105594 11 107548835 to 107548841 6 + TSS region transcription start site region 105594
Tssr111472 11 107574522 to 107574523 1 - TSS region transcription start site region 111472
Tssr105595 11 107593823 to 107593826 3 + TSS region transcription start site region 105595
Mir6932 11 107637722 to 107637779 57 + miRNA gene microRNA 6932
Cpgi4040 11 107686491 to 107686700 209 CpG island CpG island 4040
Cacng1 11 107703218 to 107716476 13258 - protein coding gene calcium channel, voltage-dependent, gamma subunit 1
Cpgi4041 11 107703746 to 107703902 156 CpG island CpG island 4041
Tssr111473 11 107716413 to 107716420 7 - TSS region transcription start site region 111473
Tssr111474 11 107716431 to 107716447 16 - TSS region transcription start site region 111474
Tssr111475 11 107716450 to 107716453 3 - TSS region transcription start site region 111475
Tssr111476 11 107716456 to 107716514 58 - TSS region transcription start site region 111476
Tssr111477 11 107716517 to 107716528 11 - TSS region transcription start site region 111477
Tssr111478 11 107716544 to 107716557 13 - TSS region transcription start site region 111478
Tssr111479 11 107716571 to 107716582 11 - TSS region transcription start site region 111479
D11Mit258 11 107725518 to 107725646 128 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 258
Hmtb6 11 107725518 to 110629004 2903486 QTL hemostasis and thrombosis rebleeding time 6
Lore4 11 107725646 to 79265183 -28460463 QTL loss of righting induced by ethanol 4
Tssr111480 11 107733666 to 107733683 17 - TSS region transcription start site region 111480
Tssr111481 11 107733943 to 107733971 28 - TSS region transcription start site region 111481
Tssr111482 11 107734017 to 107734040 23 - TSS region transcription start site region 111482
Tssr111483 11 107734050 to 107734059 9 - TSS region transcription start site region 111483
Cacng4 11 107734780 to 107794464 59684 - protein coding gene calcium channel, voltage-dependent, gamma subunit 4
Tssr111484 11 107763147 to 107763172 25 - TSS region transcription start site region 111484
Tssr111485 11 107770024 to 107770049 25 - TSS region transcription start site region 111485
Cpgi4042 11 107793033 to 107795429 2396 CpG island CpG island 4042
Gm11650 11 107793866 to 107795982 2116 + lncRNA gene predicted gene 11650
Tssr105596 11 107793866 to 107793877 11 + TSS region transcription start site region 105596
Tssr111486 11 107794642 to 107794657 15 - TSS region transcription start site region 111486
Tssr111487 11 107794659 to 107794729 70 - TSS region transcription start site region 111487
Tssr111488 11 107794741 to 107794755 14 - TSS region transcription start site region 111488
Gm23120 11 107827374 to 107827660 286 + unclassified non-coding RNA gene predicted gene, 23120
Gm27595 11 107851745 to 107851856 111 + rRNA gene predicted gene, 27595
Cacng5 11 107874605 to 107915055 40450 - protein coding gene calcium channel, voltage-dependent, gamma subunit 5
Cpgi4043 11 107914658 to 107915357 699 CpG island CpG island 4043
Tssr111489 11 107915006 to 107915039 33 - TSS region transcription start site region 111489
Tssr111490 11 107915041 to 107915069 28 - TSS region transcription start site region 111490
Prkca 11 107933387 to 108343888 410501 - protein coding gene protein kinase C, alpha
Gm10838 11 107966616 to 107970866 4250 unclassified gene predicted gene 10838
Tssr105597 11 107993983 to 107993992 9 + TSS region transcription start site region 105597
Tssr105598 11 107994006 to 107994025 19 + TSS region transcription start site region 105598
Gm11657 11 107994022 to 107994631 609 + antisense lncRNA gene predicted gene 11657
Tssr105599 11 107995405 to 107995411 6 + TSS region transcription start site region 105599
Mir7223 11 107996848 to 107996916 68 + miRNA gene microRNA 7223
Cpgi4044 11 108023124 to 108023462 338 CpG island CpG island 4044
Tssr111491 11 108044678 to 108044683 5 - TSS region transcription start site region 111491
Tssr105600 11 108062349 to 108062351 2 + TSS region transcription start site region 105600