Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:107287835-109399435

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267 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pitpnc1 11 107207892 to 107470699 262807 - protein coding gene phosphatidylinositol transfer protein, cytoplasmic 1
Tssr111449 11 107289223 to 107289227 4 - TSS region transcription start site region 111449
Tssr111450 11 107319246 to 107319269 23 - TSS region transcription start site region 111450
Gm11719 11 107330708 to 107331058 350 + pseudogene predicted gene 11719
Tssr105572 11 107335485 to 107335500 15 + TSS region transcription start site region 105572
Tssr105573 11 107335915 to 107335929 14 + TSS region transcription start site region 105573
Tssr105574 11 107335942 to 107335958 16 + TSS region transcription start site region 105574
Tssr105575 11 107336003 to 107336011 8 + TSS region transcription start site region 105575
Tssr111451 11 107337525 to 107337553 28 - TSS region transcription start site region 111451
Tssr111452 11 107337556 to 107337598 42 - TSS region transcription start site region 111452
Tssr111453 11 107337830 to 107337869 39 - TSS region transcription start site region 111453
Tssr111454 11 107337871 to 107337898 27 - TSS region transcription start site region 111454
Tssr105576 11 107337968 to 107337978 10 + TSS region transcription start site region 105576
Tssr105577 11 107337989 to 107338008 19 + TSS region transcription start site region 105577
Tssr105578 11 107338009 to 107338027 18 + TSS region transcription start site region 105578
Tssr105579 11 107338031 to 107338044 13 + TSS region transcription start site region 105579
Gm11716 11 107338050 to 107344804 6754 + antisense lncRNA gene predicted gene 11716
Tssr111455 11 107348152 to 107348179 27 - TSS region transcription start site region 111455
Tssr111456 11 107348195 to 107348213 18 - TSS region transcription start site region 111456
Tssr105580 11 107353136 to 107353145 9 + TSS region transcription start site region 105580
Gm11712 11 107386983 to 107388971 1988 + antisense lncRNA gene predicted gene 11712
Tssr111457 11 107387800 to 107387822 22 - TSS region transcription start site region 111457
Gm11713 11 107410390 to 107413549 3159 + antisense lncRNA gene predicted gene 11713
Tssr111458 11 107413702 to 107413714 12 - TSS region transcription start site region 111458
Tssr111459 11 107417346 to 107417383 37 - TSS region transcription start site region 111459
Tssr105581 11 107417512 to 107417532 20 + TSS region transcription start site region 105581
Tssr111460 11 107419881 to 107419885 4 - TSS region transcription start site region 111460
Tssr111461 11 107428070 to 107428082 12 - TSS region transcription start site region 111461
Tssr105582 11 107428231 to 107428241 10 + TSS region transcription start site region 105582
Tssr105583 11 107428242 to 107428257 15 + TSS region transcription start site region 105583
Tssr105584 11 107428273 to 107428283 10 + TSS region transcription start site region 105584
Gm11714 11 107428276 to 107435686 7410 + lncRNA gene predicted gene 11714
Tssr105585 11 107428306 to 107428317 11 + TSS region transcription start site region 105585
Tssr105586 11 107428321 to 107428353 32 + TSS region transcription start site region 105586
Tssr111462 11 107454638 to 107454655 17 - TSS region transcription start site region 111462
Tssr111463 11 107454768 to 107454783 15 - TSS region transcription start site region 111463
Tssr111464 11 107462062 to 107462067 5 - TSS region transcription start site region 111464
Tssr111465 11 107466219 to 107466223 4 - TSS region transcription start site region 111465
Cpgi4037 11 107468996 to 107471024 2028 CpG island CpG island 4037
Tssr111466 11 107469561 to 107469584 23 - TSS region transcription start site region 111466
Tssr111467 11 107470061 to 107470076 15 - TSS region transcription start site region 111467
Tssr111468 11 107470713 to 107470726 13 - TSS region transcription start site region 111468
Tssr111469 11 107470740 to 107470755 15 - TSS region transcription start site region 111469
Tssr111470 11 107470759 to 107470777 18 - TSS region transcription start site region 111470
Tssr111471 11 107470787 to 107470798 11 - TSS region transcription start site region 111471
Tssr105587 11 107470899 to 107470905 6 + TSS region transcription start site region 105587
Cpgi4038 11 107479342 to 107480006 664 CpG island CpG island 4038
Tssr105588 11 107479478 to 107479544 66 + TSS region transcription start site region 105588
Psmd12 11 107479528 to 107498036 18508 + protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 12
Tssr105589 11 107479549 to 107479565 16 + TSS region transcription start site region 105589
Gm11722 11 107481916 to 107483107 1191 + sense intronic lncRNA gene predicted gene 11722
C330019F10Rik 11 107511403 to 107527220 15817 - lincRNA gene RIKEN cDNA C330019F10 gene
A830035A12Rik 11 107526506 to 107534143 7637 - unclassified non-coding RNA gene RIKEN cDNA A830035A12 gene
Gm11649 11 107531931 to 107532305 374 - pseudogene predicted gene 11649
Gm39426 11 107545392 to 107547289 1897 - lncRNA gene predicted gene, 39426
Cpgi4039 11 107546704 to 107548710 2006 CpG island CpG island 4039
Tssr105590 11 107546846 to 107546890 44 + TSS region transcription start site region 105590
Tssr105591 11 107546902 to 107546923 21 + TSS region transcription start site region 105591
Tssr105592 11 107546932 to 107546976 44 + TSS region transcription start site region 105592
Tssr105593 11 107547925 to 107547959 34 + TSS region transcription start site region 105593
Helz 11 107547930 to 107693826 145896 + protein coding gene helicase with zinc finger domain
Tssr105594 11 107548835 to 107548841 6 + TSS region transcription start site region 105594
Tssr111472 11 107574522 to 107574523 1 - TSS region transcription start site region 111472
Tssr105595 11 107593823 to 107593826 3 + TSS region transcription start site region 105595
Mir6932 11 107637722 to 107637779 57 + miRNA gene microRNA 6932
Cpgi4040 11 107686491 to 107686700 209 CpG island CpG island 4040
Cacng1 11 107703218 to 107716476 13258 - protein coding gene calcium channel, voltage-dependent, gamma subunit 1
Cpgi4041 11 107703746 to 107703902 156 CpG island CpG island 4041
Tssr111473 11 107716413 to 107716420 7 - TSS region transcription start site region 111473
Tssr111474 11 107716431 to 107716447 16 - TSS region transcription start site region 111474
Tssr111475 11 107716450 to 107716453 3 - TSS region transcription start site region 111475
Tssr111476 11 107716456 to 107716514 58 - TSS region transcription start site region 111476
Tssr111477 11 107716517 to 107716528 11 - TSS region transcription start site region 111477
Tssr111478 11 107716544 to 107716557 13 - TSS region transcription start site region 111478
Tssr111479 11 107716571 to 107716582 11 - TSS region transcription start site region 111479
Hmtb6 11 107725518 to 110629004 2903486 QTL hemostasis and thrombosis rebleeding time 6
D11Mit258 11 107725518 to 107725646 128 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 258
Lore4 11 107725646 to 79265183 -28460463 QTL loss of righting induced by ethanol 4
Tssr111480 11 107733666 to 107733683 17 - TSS region transcription start site region 111480
Tssr111481 11 107733943 to 107733971 28 - TSS region transcription start site region 111481
Tssr111482 11 107734017 to 107734040 23 - TSS region transcription start site region 111482
Tssr111483 11 107734050 to 107734059 9 - TSS region transcription start site region 111483
Cacng4 11 107734780 to 107794464 59684 - protein coding gene calcium channel, voltage-dependent, gamma subunit 4
Tssr111484 11 107763147 to 107763172 25 - TSS region transcription start site region 111484
Tssr111485 11 107770024 to 107770049 25 - TSS region transcription start site region 111485
Cpgi4042 11 107793033 to 107795429 2396 CpG island CpG island 4042
Gm11650 11 107793866 to 107795982 2116 + lncRNA gene predicted gene 11650
Tssr105596 11 107793866 to 107793877 11 + TSS region transcription start site region 105596
Tssr111486 11 107794642 to 107794657 15 - TSS region transcription start site region 111486
Tssr111487 11 107794659 to 107794729 70 - TSS region transcription start site region 111487
Tssr111488 11 107794741 to 107794755 14 - TSS region transcription start site region 111488
Gm23120 11 107827374 to 107827660 286 + unclassified non-coding RNA gene predicted gene, 23120
Gm27595 11 107851745 to 107851856 111 + rRNA gene predicted gene, 27595
Cacng5 11 107874605 to 107915055 40450 - protein coding gene calcium channel, voltage-dependent, gamma subunit 5
Cpgi4043 11 107914658 to 107915357 699 CpG island CpG island 4043
Tssr111489 11 107915006 to 107915039 33 - TSS region transcription start site region 111489
Tssr111490 11 107915041 to 107915069 28 - TSS region transcription start site region 111490
Prkca 11 107933387 to 108343888 410501 - protein coding gene protein kinase C, alpha
Gm10838 11 107966616 to 107970866 4250 unclassified gene predicted gene 10838
Tssr105597 11 107993983 to 107993992 9 + TSS region transcription start site region 105597
Tssr105598 11 107994006 to 107994025 19 + TSS region transcription start site region 105598
Gm11657 11 107994022 to 107994631 609 + antisense lncRNA gene predicted gene 11657
Tssr105599 11 107995405 to 107995411 6 + TSS region transcription start site region 105599
Mir7223 11 107996848 to 107996916 68 + miRNA gene microRNA 7223
Cpgi4044 11 108023124 to 108023462 338 CpG island CpG island 4044
Tssr111491 11 108044678 to 108044683 5 - TSS region transcription start site region 111491
Tssr105600 11 108062349 to 108062351 2 + TSS region transcription start site region 105600
Tssr3708 11 108181832 to 108181865 33 + TSS region transcription start site region 3708
Gm11655 11 108181850 to 108194126 12276 + antisense lncRNA gene predicted gene 11655
Tssr3709 11 108186823 to 108186837 14 + TSS region transcription start site region 3709
Tssr111492 11 108227006 to 108227011 5 - TSS region transcription start site region 111492
Tssr111493 11 108241028 to 108241048 20 - TSS region transcription start site region 111493
Tssr111494 11 108249047 to 108249050 3 - TSS region transcription start site region 111494
Tssr111495 11 108261244 to 108261252 8 - TSS region transcription start site region 111495
Tssr111496 11 108262684 to 108262703 19 - TSS region transcription start site region 111496
Tssr111497 11 108262841 to 108262852 11 - TSS region transcription start site region 111497
Tssr111498 11 108270515 to 108270587 72 - TSS region transcription start site region 111498
Tssr111499 11 108272306 to 108272310 4 - TSS region transcription start site region 111499
Tssr111500 11 108273685 to 108273727 42 - TSS region transcription start site region 111500
Tssr111501 11 108273784 to 108273789 5 - TSS region transcription start site region 111501
Tssr111502 11 108290168 to 108290172 4 - TSS region transcription start site region 111502
Tssr111503 11 108295800 to 108295803 3 - TSS region transcription start site region 111503
Tssr111504 11 108321584 to 108321588 4 - TSS region transcription start site region 111504
Cpgi4045 11 108342835 to 108344435 1600 CpG island CpG island 4045
Tssr111505 11 108343549 to 108343568 19 - TSS region transcription start site region 111505
Tssr111506 11 108343855 to 108343866 11 - TSS region transcription start site region 111506
Tssr111507 11 108343879 to 108343897 18 - TSS region transcription start site region 111507
Tssr111508 11 108343917 to 108343941 24 - TSS region transcription start site region 111508
Tssr111509 11 108343944 to 108343954 10 - TSS region transcription start site region 111509
Tssr111510 11 108344090 to 108344104 14 - TSS region transcription start site region 111510
Tssr111511 11 108344119 to 108344180 61 - TSS region transcription start site region 111511
Gm46297 11 108344359 to 108349578 5219 + lncRNA gene predicted gene, 46297
Gm36709 11 108366827 to 108381121 14294 - lncRNA gene predicted gene, 36709
Gm11656 11 108377877 to 108381093 3216 + sense intronic lncRNA gene predicted gene 11656
Tssr105601 11 108381166 to 108381171 5 + TSS region transcription start site region 105601
Tssr105602 11 108381195 to 108381202 7 + TSS region transcription start site region 105602
Tssr105603 11 108381204 to 108381229 25 + TSS region transcription start site region 105603
Tssr105604 11 108395288 to 108395324 36 + TSS region transcription start site region 105604
Apoh 11 108395297 to 108414396 19099 + protein coding gene apolipoprotein H
Tssr105605 11 108395876 to 108395898 22 + TSS region transcription start site region 105605
Tssr105606 11 108395926 to 108395951 25 + TSS region transcription start site region 105606
Tssr105607 11 108404813 to 108404828 15 + TSS region transcription start site region 105607
Tssr105608 11 108407280 to 108407307 27 + TSS region transcription start site region 105608
Gm11667 11 108423273 to 108423758 485 + pseudogene predicted gene 11667
Cpgi4046 11 108424909 to 108425913 1004 CpG island CpG island 4046
Tssr111512 11 108424981 to 108424998 17 - TSS region transcription start site region 111512
Cep112 11 108425192 to 108860615 435423 + protein coding gene centrosomal protein 112
Tssr105609 11 108425242 to 108425304 62 + TSS region transcription start site region 105609
D11Mit224 11 108482862 to 108483011 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 224
Cep112os1 11 108529097 to 108533664 4567 - antisense lncRNA gene centrosomal protein 112, opposite strand 1
Tssr111513 11 108533654 to 108533679 25 - TSS region transcription start site region 111513
Tssr111514 11 108533694 to 108533697 3 - TSS region transcription start site region 111514
Tssr105610 11 108587092 to 108587110 18 + TSS region transcription start site region 105610
Tssr105611 11 108587131 to 108587136 5 + TSS region transcription start site region 105611
Tssr105612 11 108606247 to 108606278 31 + TSS region transcription start site region 105612
Tssr105613 11 108637404 to 108637415 11 + TSS region transcription start site region 105613
Tssr105614 11 108682614 to 108682639 25 + TSS region transcription start site region 105614
Tssr105615 11 108682643 to 108682652 9 + TSS region transcription start site region 105615
Olfr1397-ps1 11 108687077 to 108688035 958 - pseudogene olfactory receptor 1397, pseudogene 1
Pkccl 11 108713782 to 108713906 124 QTL protein kinase C content in lungs
D11Mit333 11 108713782 to 108713906 124 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 333
Ath19 11 108713782 to 108713906 124 QTL atherosclerosis 19
Rpl23a-ps14 11 108716483 to 108716906 423 + pseudogene ribosomal protein L23A, pseudogene 14
Tssr105616 11 108747704 to 108747706 2 + TSS region transcription start site region 105616
Cep112it 11 108820333 to 108826942 6609 + sense intronic lncRNA gene centrosomal protein 112, intronic transcript
Gm36818 11 108826689 to 108855767 29078 - lncRNA gene predicted gene, 36818
Gm46298 11 108864079 to 108912539 48460 - lncRNA gene predicted gene, 46298
D11Mit161 11 108915424 to 108915558 134 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 161
Pas5b 11 108915558 to 96285639 -12629919 QTL pulmonary adenoma susceptibility 5b
Cpgi4047 11 108920119 to 108922176 2057 CpG island CpG island 4047
Tssr105617 11 108920342 to 108920358 16 + TSS region transcription start site region 105617
Axin2 11 108920349 to 108950783 30434 + protein coding gene axin 2
Tssr105618 11 108920371 to 108920384 13 + TSS region transcription start site region 105618
Tssr105619 11 108920399 to 108920493 94 + TSS region transcription start site region 105619
Tssr105620 11 108920499 to 108920510 11 + TSS region transcription start site region 105620
Tssr105621 11 108920811 to 108920841 30 + TSS region transcription start site region 105621
Tssr105622 11 108920843 to 108920856 13 + TSS region transcription start site region 105622
Tssr105623 11 108921129 to 108921146 17 + TSS region transcription start site region 105623
Tssr105624 11 108921670 to 108921684 14 + TSS region transcription start site region 105624
Cpgi4048 11 108922476 to 108922908 432 CpG island CpG island 4048
Tssr105625 11 108923277 to 108923286 9 + TSS region transcription start site region 105625
Tssr3710 11 108936694 to 108936695 1 + TSS region transcription start site region 3710
Gm11670 11 108939310 to 108942015 2705 - antisense lncRNA gene predicted gene 11670
Tssr105626 11 108941567 to 108941571 4 + TSS region transcription start site region 105626
Gm36876 11 108981494 to 109034783 53289 + lncRNA gene predicted gene, 36876
Gm11668 11 109007651 to 109008781 1130 + pseudogene predicted gene 11668
Cpgi4049 11 109011642 to 109012316 674 CpG island CpG island 4049
Tssr111515 11 109011705 to 109011732 27 - TSS region transcription start site region 111515
Tssr105627 11 109011715 to 109011755 40 + TSS region transcription start site region 105627
Tssr111516 11 109011771 to 109011782 11 - TSS region transcription start site region 111516
Tssr105628 11 109011815 to 109011826 11 + TSS region transcription start site region 105628
Tssr105629 11 109011831 to 109011859 28 + TSS region transcription start site region 105629
Tssr111517 11 109011840 to 109011853 13 - TSS region transcription start site region 111517
Tssr111518 11 109011860 to 109011871 11 - TSS region transcription start site region 111518
Tssr105630 11 109011869 to 109011906 37 + TSS region transcription start site region 105630
Tssr111519 11 109011873 to 109011882 9 - TSS region transcription start site region 111519
Tssr111520 11 109011903 to 109011940 37 - TSS region transcription start site region 111520
Tssr105631 11 109011986 to 109011994 8 + TSS region transcription start site region 105631
Tssr111521 11 109011988 to 109012000 12 - TSS region transcription start site region 111521
Gm24149 11 109066984 to 109067090 106 - snRNA gene predicted gene, 24149