Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:107052077-110323035

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448 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bptf 11 107033081 to 107131922 98841 - protein coding gene bromodomain PHD finger transcription factor
Tssr111436 11 107080834 to 107080859 25 - TSS region transcription start site region 111436
Tssr111437 11 107081299 to 107081317 18 - TSS region transcription start site region 111437
Gm4098 11 107100789 to 107105384 4595 pseudogene predicted gene 4098
Cpgi4035 11 107131128 to 107132741 1613 CpG island CpG island 4035
Tssr111438 11 107131497 to 107131540 43 - TSS region transcription start site region 111438
Tssr111439 11 107131889 to 107131900 11 - TSS region transcription start site region 111439
Tssr111440 11 107131943 to 107131954 11 - TSS region transcription start site region 111440
Tssr111441 11 107132114 to 107132166 52 - TSS region transcription start site region 111441
Tssr111442 11 107132173 to 107132201 28 - TSS region transcription start site region 111442
Tssr111443 11 107132644 to 107132661 17 - TSS region transcription start site region 111443
Tssr111444 11 107137718 to 107137743 25 - TSS region transcription start site region 111444
Tssr105568 11 107137794 to 107137840 46 + TSS region transcription start site region 105568
Gm11715 11 107157408 to 107167125 9717 + antisense lncRNA gene predicted gene 11715
Nol11 11 107166663 to 107189381 22718 - protein coding gene nucleolar protein 11
Rps12-ps26 11 107171900 to 107172232 332 - pseudogene ribosomal protein S12, pseudogene 26
Gm18096 11 107182563 to 107183365 802 + pseudogene predicted gene, 18096
Cpgi4036 11 107188619 to 107189549 930 CpG island CpG island 4036
Tssr111445 11 107189255 to 107189307 52 - TSS region transcription start site region 111445
Tssr111446 11 107189325 to 107189340 15 - TSS region transcription start site region 111446
Tssr105569 11 107189431 to 107189442 11 + TSS region transcription start site region 105569
Gm39425 11 107189431 to 107205839 16408 + lncRNA gene predicted gene, 39425
Gm11718 11 107191094 to 107191630 536 + pseudogene predicted gene 11718
Tssr105570 11 107201916 to 107201930 14 + TSS region transcription start site region 105570
Tssr105571 11 107201972 to 107201983 11 + TSS region transcription start site region 105571
Pitpnc1 11 107207892 to 107470699 262807 - protein coding gene phosphatidylinositol transfer protein, cytoplasmic 1
Tssr111447 11 107212275 to 107212279 4 - TSS region transcription start site region 111447
Tssr111448 11 107213960 to 107213965 5 - TSS region transcription start site region 111448
5830433D23Rik 11 107262659 to 107264101 1442 unclassified gene RIKEN cDNA 5830433D23 gene
Tssr111449 11 107289223 to 107289227 4 - TSS region transcription start site region 111449
Tssr111450 11 107319246 to 107319269 23 - TSS region transcription start site region 111450
Gm11719 11 107330708 to 107331058 350 + pseudogene predicted gene 11719
Tssr105572 11 107335485 to 107335500 15 + TSS region transcription start site region 105572
Tssr105573 11 107335915 to 107335929 14 + TSS region transcription start site region 105573
Tssr105574 11 107335942 to 107335958 16 + TSS region transcription start site region 105574
Tssr105575 11 107336003 to 107336011 8 + TSS region transcription start site region 105575
Tssr111451 11 107337525 to 107337553 28 - TSS region transcription start site region 111451
Tssr111452 11 107337556 to 107337598 42 - TSS region transcription start site region 111452
Tssr111453 11 107337830 to 107337869 39 - TSS region transcription start site region 111453
Tssr111454 11 107337871 to 107337898 27 - TSS region transcription start site region 111454
Tssr105576 11 107337968 to 107337978 10 + TSS region transcription start site region 105576
Tssr105577 11 107337989 to 107338008 19 + TSS region transcription start site region 105577
Tssr105578 11 107338009 to 107338027 18 + TSS region transcription start site region 105578
Tssr105579 11 107338031 to 107338044 13 + TSS region transcription start site region 105579
Gm11716 11 107338050 to 107344804 6754 + antisense lncRNA gene predicted gene 11716
Tssr111455 11 107348152 to 107348179 27 - TSS region transcription start site region 111455
Tssr111456 11 107348195 to 107348213 18 - TSS region transcription start site region 111456
Tssr105580 11 107353136 to 107353145 9 + TSS region transcription start site region 105580
Gm11712 11 107386983 to 107388971 1988 + antisense lncRNA gene predicted gene 11712
Tssr111457 11 107387800 to 107387822 22 - TSS region transcription start site region 111457
Gm11713 11 107410390 to 107413549 3159 + antisense lncRNA gene predicted gene 11713
Tssr111458 11 107413702 to 107413714 12 - TSS region transcription start site region 111458
Tssr111459 11 107417346 to 107417383 37 - TSS region transcription start site region 111459
Tssr105581 11 107417512 to 107417532 20 + TSS region transcription start site region 105581
Tssr111460 11 107419881 to 107419885 4 - TSS region transcription start site region 111460
Tssr111461 11 107428070 to 107428082 12 - TSS region transcription start site region 111461
Tssr105582 11 107428231 to 107428241 10 + TSS region transcription start site region 105582
Tssr105583 11 107428242 to 107428257 15 + TSS region transcription start site region 105583
Tssr105584 11 107428273 to 107428283 10 + TSS region transcription start site region 105584
Gm11714 11 107428276 to 107435686 7410 + lncRNA gene predicted gene 11714
Tssr105585 11 107428306 to 107428317 11 + TSS region transcription start site region 105585
Tssr105586 11 107428321 to 107428353 32 + TSS region transcription start site region 105586
Tssr111462 11 107454638 to 107454655 17 - TSS region transcription start site region 111462
Tssr111463 11 107454768 to 107454783 15 - TSS region transcription start site region 111463
Tssr111464 11 107462062 to 107462067 5 - TSS region transcription start site region 111464
Tssr111465 11 107466219 to 107466223 4 - TSS region transcription start site region 111465
Cpgi4037 11 107468996 to 107471024 2028 CpG island CpG island 4037
Tssr111466 11 107469561 to 107469584 23 - TSS region transcription start site region 111466
Tssr111467 11 107470061 to 107470076 15 - TSS region transcription start site region 111467
Tssr111468 11 107470713 to 107470726 13 - TSS region transcription start site region 111468
Tssr111469 11 107470740 to 107470755 15 - TSS region transcription start site region 111469
Tssr111470 11 107470759 to 107470777 18 - TSS region transcription start site region 111470
Tssr111471 11 107470787 to 107470798 11 - TSS region transcription start site region 111471
Tssr105587 11 107470899 to 107470905 6 + TSS region transcription start site region 105587
Cpgi4038 11 107479342 to 107480006 664 CpG island CpG island 4038
Tssr105588 11 107479478 to 107479544 66 + TSS region transcription start site region 105588
Psmd12 11 107479528 to 107498036 18508 + protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 12
Tssr105589 11 107479549 to 107479565 16 + TSS region transcription start site region 105589
Gm11722 11 107481916 to 107483107 1191 + sense intronic lncRNA gene predicted gene 11722
C330019F10Rik 11 107511403 to 107527220 15817 - lincRNA gene RIKEN cDNA C330019F10 gene
A830035A12Rik 11 107526506 to 107534143 7637 - unclassified non-coding RNA gene RIKEN cDNA A830035A12 gene
Gm11649 11 107531931 to 107532305 374 - pseudogene predicted gene 11649
Gm39426 11 107545392 to 107547289 1897 - lncRNA gene predicted gene, 39426
Cpgi4039 11 107546704 to 107548710 2006 CpG island CpG island 4039
Tssr105590 11 107546846 to 107546890 44 + TSS region transcription start site region 105590
Tssr105591 11 107546902 to 107546923 21 + TSS region transcription start site region 105591
Tssr105592 11 107546932 to 107546976 44 + TSS region transcription start site region 105592
Tssr105593 11 107547925 to 107547959 34 + TSS region transcription start site region 105593
Helz 11 107547930 to 107693826 145896 + protein coding gene helicase with zinc finger domain
Tssr105594 11 107548835 to 107548841 6 + TSS region transcription start site region 105594
Tssr111472 11 107574522 to 107574523 1 - TSS region transcription start site region 111472
Tssr105595 11 107593823 to 107593826 3 + TSS region transcription start site region 105595
Mir6932 11 107637722 to 107637779 57 + miRNA gene microRNA 6932
Cpgi4040 11 107686491 to 107686700 209 CpG island CpG island 4040
Cacng1 11 107703218 to 107716476 13258 - protein coding gene calcium channel, voltage-dependent, gamma subunit 1
Cpgi4041 11 107703746 to 107703902 156 CpG island CpG island 4041
Tssr111473 11 107716413 to 107716420 7 - TSS region transcription start site region 111473
Tssr111474 11 107716431 to 107716447 16 - TSS region transcription start site region 111474
Tssr111475 11 107716450 to 107716453 3 - TSS region transcription start site region 111475
Tssr111476 11 107716456 to 107716514 58 - TSS region transcription start site region 111476
Tssr111477 11 107716517 to 107716528 11 - TSS region transcription start site region 111477
Tssr111478 11 107716544 to 107716557 13 - TSS region transcription start site region 111478
Tssr111479 11 107716571 to 107716582 11 - TSS region transcription start site region 111479
Hmtb6 11 107725518 to 110629004 2903486 QTL hemostasis and thrombosis rebleeding time 6
D11Mit258 11 107725518 to 107725646 128 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 258
Lore4 11 107725646 to 79265183 -28460463 QTL loss of righting induced by ethanol 4
Tssr111480 11 107733666 to 107733683 17 - TSS region transcription start site region 111480
Tssr111481 11 107733943 to 107733971 28 - TSS region transcription start site region 111481
Tssr111482 11 107734017 to 107734040 23 - TSS region transcription start site region 111482
Tssr111483 11 107734050 to 107734059 9 - TSS region transcription start site region 111483
Cacng4 11 107734780 to 107794464 59684 - protein coding gene calcium channel, voltage-dependent, gamma subunit 4
Tssr111484 11 107763147 to 107763172 25 - TSS region transcription start site region 111484
Tssr111485 11 107770024 to 107770049 25 - TSS region transcription start site region 111485
Cpgi4042 11 107793033 to 107795429 2396 CpG island CpG island 4042
Tssr105596 11 107793866 to 107793877 11 + TSS region transcription start site region 105596
Gm11650 11 107793866 to 107795982 2116 + lncRNA gene predicted gene 11650
Tssr111486 11 107794642 to 107794657 15 - TSS region transcription start site region 111486
Tssr111487 11 107794659 to 107794729 70 - TSS region transcription start site region 111487
Tssr111488 11 107794741 to 107794755 14 - TSS region transcription start site region 111488
Gm23120 11 107827374 to 107827660 286 + unclassified non-coding RNA gene predicted gene, 23120
Gm27595 11 107851745 to 107851856 111 + rRNA gene predicted gene, 27595
Cacng5 11 107874605 to 107915055 40450 - protein coding gene calcium channel, voltage-dependent, gamma subunit 5
Cpgi4043 11 107914658 to 107915357 699 CpG island CpG island 4043
Tssr111489 11 107915006 to 107915039 33 - TSS region transcription start site region 111489
Tssr111490 11 107915041 to 107915069 28 - TSS region transcription start site region 111490
Prkca 11 107933387 to 108343888 410501 - protein coding gene protein kinase C, alpha
Gm10838 11 107966616 to 107970866 4250 unclassified gene predicted gene 10838
Tssr105597 11 107993983 to 107993992 9 + TSS region transcription start site region 105597
Tssr105598 11 107994006 to 107994025 19 + TSS region transcription start site region 105598
Gm11657 11 107994022 to 107994631 609 + antisense lncRNA gene predicted gene 11657
Tssr105599 11 107995405 to 107995411 6 + TSS region transcription start site region 105599
Mir7223 11 107996848 to 107996916 68 + miRNA gene microRNA 7223
Cpgi4044 11 108023124 to 108023462 338 CpG island CpG island 4044
Tssr111491 11 108044678 to 108044683 5 - TSS region transcription start site region 111491
Tssr105600 11 108062349 to 108062351 2 + TSS region transcription start site region 105600
Tssr3708 11 108181832 to 108181865 33 + TSS region transcription start site region 3708
Gm11655 11 108181850 to 108194126 12276 + antisense lncRNA gene predicted gene 11655
Tssr3709 11 108186823 to 108186837 14 + TSS region transcription start site region 3709
Tssr111492 11 108227006 to 108227011 5 - TSS region transcription start site region 111492
Tssr111493 11 108241028 to 108241048 20 - TSS region transcription start site region 111493
Tssr111494 11 108249047 to 108249050 3 - TSS region transcription start site region 111494
Tssr111495 11 108261244 to 108261252 8 - TSS region transcription start site region 111495
Tssr111496 11 108262684 to 108262703 19 - TSS region transcription start site region 111496
Tssr111497 11 108262841 to 108262852 11 - TSS region transcription start site region 111497
Tssr111498 11 108270515 to 108270587 72 - TSS region transcription start site region 111498
Tssr111499 11 108272306 to 108272310 4 - TSS region transcription start site region 111499
Tssr111500 11 108273685 to 108273727 42 - TSS region transcription start site region 111500
Tssr111501 11 108273784 to 108273789 5 - TSS region transcription start site region 111501
Tssr111502 11 108290168 to 108290172 4 - TSS region transcription start site region 111502
Tssr111503 11 108295800 to 108295803 3 - TSS region transcription start site region 111503
Tssr111504 11 108321584 to 108321588 4 - TSS region transcription start site region 111504
Cpgi4045 11 108342835 to 108344435 1600 CpG island CpG island 4045
Tssr111505 11 108343549 to 108343568 19 - TSS region transcription start site region 111505
Tssr111506 11 108343855 to 108343866 11 - TSS region transcription start site region 111506
Tssr111507 11 108343879 to 108343897 18 - TSS region transcription start site region 111507
Tssr111508 11 108343917 to 108343941 24 - TSS region transcription start site region 111508
Tssr111509 11 108343944 to 108343954 10 - TSS region transcription start site region 111509
Tssr111510 11 108344090 to 108344104 14 - TSS region transcription start site region 111510
Tssr111511 11 108344119 to 108344180 61 - TSS region transcription start site region 111511
Gm46297 11 108344359 to 108349578 5219 + lncRNA gene predicted gene, 46297
Gm36709 11 108366827 to 108381121 14294 - lncRNA gene predicted gene, 36709
Gm11656 11 108377877 to 108381093 3216 + sense intronic lncRNA gene predicted gene 11656
Tssr105601 11 108381166 to 108381171 5 + TSS region transcription start site region 105601
Tssr105602 11 108381195 to 108381202 7 + TSS region transcription start site region 105602
Tssr105603 11 108381204 to 108381229 25 + TSS region transcription start site region 105603
Tssr105604 11 108395288 to 108395324 36 + TSS region transcription start site region 105604
Apoh 11 108395297 to 108414396 19099 + protein coding gene apolipoprotein H
Tssr105605 11 108395876 to 108395898 22 + TSS region transcription start site region 105605
Tssr105606 11 108395926 to 108395951 25 + TSS region transcription start site region 105606
Tssr105607 11 108404813 to 108404828 15 + TSS region transcription start site region 105607
Tssr105608 11 108407280 to 108407307 27 + TSS region transcription start site region 105608
Gm11667 11 108423273 to 108423758 485 + pseudogene predicted gene 11667
Cpgi4046 11 108424909 to 108425913 1004 CpG island CpG island 4046
Tssr111512 11 108424981 to 108424998 17 - TSS region transcription start site region 111512
Cep112 11 108425192 to 108860615 435423 + protein coding gene centrosomal protein 112
Tssr105609 11 108425242 to 108425304 62 + TSS region transcription start site region 105609
D11Mit224 11 108482862 to 108483011 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 224
Cep112os1 11 108529097 to 108533664 4567 - antisense lncRNA gene centrosomal protein 112, opposite strand 1
Tssr111513 11 108533654 to 108533679 25 - TSS region transcription start site region 111513
Tssr111514 11 108533694 to 108533697 3 - TSS region transcription start site region 111514
Tssr105610 11 108587092 to 108587110 18 + TSS region transcription start site region 105610
Tssr105611 11 108587131 to 108587136 5 + TSS region transcription start site region 105611
Tssr105612 11 108606247 to 108606278 31 + TSS region transcription start site region 105612
Tssr105613 11 108637404 to 108637415 11 + TSS region transcription start site region 105613
Tssr105614 11 108682614 to 108682639 25 + TSS region transcription start site region 105614
Tssr105615 11 108682643 to 108682652 9 + TSS region transcription start site region 105615
Olfr1397-ps1 11 108687077 to 108688035 958 - pseudogene olfactory receptor 1397, pseudogene 1
D11Mit333 11 108713782 to 108713906 124 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 333
Ath19 11 108713782 to 108713906 124 QTL atherosclerosis 19
Pkccl 11 108713782 to 108713906 124 QTL protein kinase C content in lungs
Rpl23a-ps14 11 108716483 to 108716906 423 + pseudogene ribosomal protein L23A, pseudogene 14
Tssr105616 11 108747704 to 108747706 2 + TSS region transcription start site region 105616
Cep112it 11 108820333 to 108826942 6609 + sense intronic lncRNA gene centrosomal protein 112, intronic transcript
Gm36818 11 108826689 to 108855767 29078 - lncRNA gene predicted gene, 36818
Gm46298 11 108864079 to 108912539 48460 - lncRNA gene predicted gene, 46298
D11Mit161 11 108915424 to 108915558 134 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 161
Pas5b 11 108915558 to 96285639 -12629919 QTL pulmonary adenoma susceptibility 5b
Cpgi4047 11 108920119 to 108922176 2057 CpG island CpG island 4047
Tssr105617 11 108920342 to 108920358 16 + TSS region transcription start site region 105617
Axin2 11 108920349 to 108950783 30434 + protein coding gene axin 2