Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:106911506-108149143

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175 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smurf2 11 106820066 to 106920715 100649 - protein coding gene SMAD specific E3 ubiquitin protein ligase 2
Tssr111422 11 106913627 to 106913631 4 - TSS region transcription start site region 111422
Cpgi4029 11 106919646 to 106921188 1542 CpG island CpG island 4029
Tssr111423 11 106920608 to 106920643 35 - TSS region transcription start site region 111423
Gm27322 11 106920658 to 106920761 103 - miRNA gene predicted gene, 27322
Tssr111424 11 106920681 to 106920735 54 - TSS region transcription start site region 111424
D11Mit223 11 106927601 to 106927747 146 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 223
Tssr111425 11 106928030 to 106928051 21 - TSS region transcription start site region 111425
Gm11707 11 106972058 to 106973090 1032 - lincRNA gene predicted gene 11707
Gm8339 11 106972083 to 106973174 1091 + pseudogene predicted gene 8339
Tssr111426 11 106973097 to 106973117 20 - TSS region transcription start site region 111426
Tssr111427 11 106973126 to 106973138 12 - TSS region transcription start site region 111427
Ewc5 11 106978425 to 106978425 0 QTL ethanol withdrawal and consumption 5
Kpna2 11 106988629 to 106999525 10896 - protein coding gene karyopherin (importin) alpha 2
Tssr111428 11 106998441 to 106998446 5 - TSS region transcription start site region 111428
Tssr111429 11 106998449 to 106998463 14 - TSS region transcription start site region 111429
Tssr111430 11 106998465 to 106998482 17 - TSS region transcription start site region 111430
Tssr111431 11 106998483 to 106998491 8 - TSS region transcription start site region 111431
Cpgi4030 11 106998666 to 106999788 1122 CpG island CpG island 4030
Tssr111432 11 106999461 to 106999473 12 - TSS region transcription start site region 111432
Tssr111433 11 106999482 to 106999503 21 - TSS region transcription start site region 111433
Tssr105560 11 106999678 to 106999683 5 + TSS region transcription start site region 105560
Tssr105561 11 106999690 to 106999728 38 + TSS region transcription start site region 105561
Gm11708 11 107003912 to 107004740 828 - pseudogene predicted gene 11708
Gm39424 11 107010191 to 107013077 2886 + lncRNA gene predicted gene, 39424
Cpgi4031 11 107012603 to 107012969 366 CpG island CpG island 4031
Tssr111434 11 107012682 to 107012729 47 - TSS region transcription start site region 111434
n-TRccg1 11 107012866 to 107012938 72 + tRNA gene nuclear encoded tRNA arginine 1 (anticodon CCG)
Tssr105562 11 107012901 to 107012905 4 + TSS region transcription start site region 105562
Tssr111435 11 107015676 to 107015680 4 - TSS region transcription start site region 111435
Tssr105563 11 107022736 to 107022743 7 + TSS region transcription start site region 105563
Tssr105564 11 107025587 to 107025598 11 + TSS region transcription start site region 105564
Tssr105565 11 107025604 to 107025630 26 + TSS region transcription start site region 105565
1810010H24Rik 11 107025681 to 107030443 4762 + protein coding gene RIKEN cDNA 1810010H24 gene
Cpgi4032 11 107025689 to 107026307 618 CpG island CpG island 4032
Tssr105566 11 107025853 to 107025892 39 + TSS region transcription start site region 105566
Tssr105567 11 107026050 to 107026073 23 + TSS region transcription start site region 105567
Gm36273 11 107026883 to 107027739 856 - lncRNA gene predicted gene, 36273
Cpgi4033 11 107027621 to 107028713 1092 CpG island CpG island 4033
Cpgi4034 11 107029596 to 107029829 233 CpG island CpG island 4034
Bptf 11 107033081 to 107131922 98841 - protein coding gene bromodomain PHD finger transcription factor
Tssr111436 11 107080834 to 107080859 25 - TSS region transcription start site region 111436
Tssr111437 11 107081299 to 107081317 18 - TSS region transcription start site region 111437
Gm4098 11 107100789 to 107105384 4595 pseudogene predicted gene 4098
Cpgi4035 11 107131128 to 107132741 1613 CpG island CpG island 4035
Tssr111438 11 107131497 to 107131540 43 - TSS region transcription start site region 111438
Tssr111439 11 107131889 to 107131900 11 - TSS region transcription start site region 111439
Tssr111440 11 107131943 to 107131954 11 - TSS region transcription start site region 111440
Tssr111441 11 107132114 to 107132166 52 - TSS region transcription start site region 111441
Tssr111442 11 107132173 to 107132201 28 - TSS region transcription start site region 111442
Tssr111443 11 107132644 to 107132661 17 - TSS region transcription start site region 111443
Tssr111444 11 107137718 to 107137743 25 - TSS region transcription start site region 111444
Tssr105568 11 107137794 to 107137840 46 + TSS region transcription start site region 105568
Gm11715 11 107157408 to 107167125 9717 + antisense lncRNA gene predicted gene 11715
Nol11 11 107166663 to 107189381 22718 - protein coding gene nucleolar protein 11
Rps12-ps26 11 107171900 to 107172232 332 - pseudogene ribosomal protein S12, pseudogene 26
Gm18096 11 107182563 to 107183365 802 + pseudogene predicted gene, 18096
Cpgi4036 11 107188619 to 107189549 930 CpG island CpG island 4036
Tssr111445 11 107189255 to 107189307 52 - TSS region transcription start site region 111445
Tssr111446 11 107189325 to 107189340 15 - TSS region transcription start site region 111446
Gm39425 11 107189431 to 107205839 16408 + lncRNA gene predicted gene, 39425
Tssr105569 11 107189431 to 107189442 11 + TSS region transcription start site region 105569
Gm11718 11 107191094 to 107191630 536 + pseudogene predicted gene 11718
Tssr105570 11 107201916 to 107201930 14 + TSS region transcription start site region 105570
Tssr105571 11 107201972 to 107201983 11 + TSS region transcription start site region 105571
Pitpnc1 11 107207892 to 107470699 262807 - protein coding gene phosphatidylinositol transfer protein, cytoplasmic 1
Tssr111447 11 107212275 to 107212279 4 - TSS region transcription start site region 111447
Tssr111448 11 107213960 to 107213965 5 - TSS region transcription start site region 111448
5830433D23Rik 11 107262659 to 107264101 1442 unclassified gene RIKEN cDNA 5830433D23 gene
Tssr111449 11 107289223 to 107289227 4 - TSS region transcription start site region 111449
Tssr111450 11 107319246 to 107319269 23 - TSS region transcription start site region 111450
Gm11719 11 107330708 to 107331058 350 + pseudogene predicted gene 11719
Tssr105572 11 107335485 to 107335500 15 + TSS region transcription start site region 105572
Tssr105573 11 107335915 to 107335929 14 + TSS region transcription start site region 105573
Tssr105574 11 107335942 to 107335958 16 + TSS region transcription start site region 105574
Tssr105575 11 107336003 to 107336011 8 + TSS region transcription start site region 105575
Tssr111451 11 107337525 to 107337553 28 - TSS region transcription start site region 111451
Tssr111452 11 107337556 to 107337598 42 - TSS region transcription start site region 111452
Tssr111453 11 107337830 to 107337869 39 - TSS region transcription start site region 111453
Tssr111454 11 107337871 to 107337898 27 - TSS region transcription start site region 111454
Tssr105576 11 107337968 to 107337978 10 + TSS region transcription start site region 105576
Tssr105577 11 107337989 to 107338008 19 + TSS region transcription start site region 105577
Tssr105578 11 107338009 to 107338027 18 + TSS region transcription start site region 105578
Tssr105579 11 107338031 to 107338044 13 + TSS region transcription start site region 105579
Gm11716 11 107338050 to 107344804 6754 + antisense lncRNA gene predicted gene 11716
Tssr111455 11 107348152 to 107348179 27 - TSS region transcription start site region 111455
Tssr111456 11 107348195 to 107348213 18 - TSS region transcription start site region 111456
Tssr105580 11 107353136 to 107353145 9 + TSS region transcription start site region 105580
Gm11712 11 107386983 to 107388971 1988 + antisense lncRNA gene predicted gene 11712
Tssr111457 11 107387800 to 107387822 22 - TSS region transcription start site region 111457
Gm11713 11 107410390 to 107413549 3159 + antisense lncRNA gene predicted gene 11713
Tssr111458 11 107413702 to 107413714 12 - TSS region transcription start site region 111458
Tssr111459 11 107417346 to 107417383 37 - TSS region transcription start site region 111459
Tssr105581 11 107417512 to 107417532 20 + TSS region transcription start site region 105581
Tssr111460 11 107419881 to 107419885 4 - TSS region transcription start site region 111460
Tssr111461 11 107428070 to 107428082 12 - TSS region transcription start site region 111461
Tssr105582 11 107428231 to 107428241 10 + TSS region transcription start site region 105582
Tssr105583 11 107428242 to 107428257 15 + TSS region transcription start site region 105583
Tssr105584 11 107428273 to 107428283 10 + TSS region transcription start site region 105584
Gm11714 11 107428276 to 107435686 7410 + lncRNA gene predicted gene 11714
Tssr105585 11 107428306 to 107428317 11 + TSS region transcription start site region 105585
Tssr105586 11 107428321 to 107428353 32 + TSS region transcription start site region 105586
Tssr111462 11 107454638 to 107454655 17 - TSS region transcription start site region 111462
Tssr111463 11 107454768 to 107454783 15 - TSS region transcription start site region 111463
Tssr111464 11 107462062 to 107462067 5 - TSS region transcription start site region 111464
Tssr111465 11 107466219 to 107466223 4 - TSS region transcription start site region 111465
Cpgi4037 11 107468996 to 107471024 2028 CpG island CpG island 4037
Tssr111466 11 107469561 to 107469584 23 - TSS region transcription start site region 111466
Tssr111467 11 107470061 to 107470076 15 - TSS region transcription start site region 111467
Tssr111468 11 107470713 to 107470726 13 - TSS region transcription start site region 111468
Tssr111469 11 107470740 to 107470755 15 - TSS region transcription start site region 111469
Tssr111470 11 107470759 to 107470777 18 - TSS region transcription start site region 111470
Tssr111471 11 107470787 to 107470798 11 - TSS region transcription start site region 111471
Tssr105587 11 107470899 to 107470905 6 + TSS region transcription start site region 105587
Cpgi4038 11 107479342 to 107480006 664 CpG island CpG island 4038
Tssr105588 11 107479478 to 107479544 66 + TSS region transcription start site region 105588
Psmd12 11 107479528 to 107498036 18508 + protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 12
Tssr105589 11 107479549 to 107479565 16 + TSS region transcription start site region 105589
Gm11722 11 107481916 to 107483107 1191 + sense intronic lncRNA gene predicted gene 11722
C330019F10Rik 11 107511403 to 107527220 15817 - lincRNA gene RIKEN cDNA C330019F10 gene
A830035A12Rik 11 107526506 to 107534143 7637 - unclassified non-coding RNA gene RIKEN cDNA A830035A12 gene
Gm11649 11 107531931 to 107532305 374 - pseudogene predicted gene 11649
Gm39426 11 107545392 to 107547289 1897 - lncRNA gene predicted gene, 39426
Cpgi4039 11 107546704 to 107548710 2006 CpG island CpG island 4039
Tssr105590 11 107546846 to 107546890 44 + TSS region transcription start site region 105590
Tssr105591 11 107546902 to 107546923 21 + TSS region transcription start site region 105591
Tssr105592 11 107546932 to 107546976 44 + TSS region transcription start site region 105592
Tssr105593 11 107547925 to 107547959 34 + TSS region transcription start site region 105593
Helz 11 107547930 to 107693826 145896 + protein coding gene helicase with zinc finger domain
Tssr105594 11 107548835 to 107548841 6 + TSS region transcription start site region 105594
Tssr111472 11 107574522 to 107574523 1 - TSS region transcription start site region 111472
Tssr105595 11 107593823 to 107593826 3 + TSS region transcription start site region 105595
Mir6932 11 107637722 to 107637779 57 + miRNA gene microRNA 6932
Cpgi4040 11 107686491 to 107686700 209 CpG island CpG island 4040
Cacng1 11 107703218 to 107716476 13258 - protein coding gene calcium channel, voltage-dependent, gamma subunit 1
Cpgi4041 11 107703746 to 107703902 156 CpG island CpG island 4041
Tssr111473 11 107716413 to 107716420 7 - TSS region transcription start site region 111473
Tssr111474 11 107716431 to 107716447 16 - TSS region transcription start site region 111474
Tssr111475 11 107716450 to 107716453 3 - TSS region transcription start site region 111475
Tssr111476 11 107716456 to 107716514 58 - TSS region transcription start site region 111476
Tssr111477 11 107716517 to 107716528 11 - TSS region transcription start site region 111477
Tssr111478 11 107716544 to 107716557 13 - TSS region transcription start site region 111478
Tssr111479 11 107716571 to 107716582 11 - TSS region transcription start site region 111479
Hmtb6 11 107725518 to 110629004 2903486 QTL hemostasis and thrombosis rebleeding time 6
D11Mit258 11 107725518 to 107725646 128 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 258
Lore4 11 107725646 to 79265183 -28460463 QTL loss of righting induced by ethanol 4
Tssr111480 11 107733666 to 107733683 17 - TSS region transcription start site region 111480
Tssr111481 11 107733943 to 107733971 28 - TSS region transcription start site region 111481
Tssr111482 11 107734017 to 107734040 23 - TSS region transcription start site region 111482
Tssr111483 11 107734050 to 107734059 9 - TSS region transcription start site region 111483
Cacng4 11 107734780 to 107794464 59684 - protein coding gene calcium channel, voltage-dependent, gamma subunit 4
Tssr111484 11 107763147 to 107763172 25 - TSS region transcription start site region 111484
Tssr111485 11 107770024 to 107770049 25 - TSS region transcription start site region 111485
Cpgi4042 11 107793033 to 107795429 2396 CpG island CpG island 4042
Gm11650 11 107793866 to 107795982 2116 + lncRNA gene predicted gene 11650
Tssr105596 11 107793866 to 107793877 11 + TSS region transcription start site region 105596
Tssr111486 11 107794642 to 107794657 15 - TSS region transcription start site region 111486
Tssr111487 11 107794659 to 107794729 70 - TSS region transcription start site region 111487
Tssr111488 11 107794741 to 107794755 14 - TSS region transcription start site region 111488
Gm23120 11 107827374 to 107827660 286 + unclassified non-coding RNA gene predicted gene, 23120
Gm27595 11 107851745 to 107851856 111 + rRNA gene predicted gene, 27595
Cacng5 11 107874605 to 107915055 40450 - protein coding gene calcium channel, voltage-dependent, gamma subunit 5
Cpgi4043 11 107914658 to 107915357 699 CpG island CpG island 4043
Tssr111489 11 107915006 to 107915039 33 - TSS region transcription start site region 111489
Tssr111490 11 107915041 to 107915069 28 - TSS region transcription start site region 111490
Prkca 11 107933387 to 108343888 410501 - protein coding gene protein kinase C, alpha
Gm10838 11 107966616 to 107970866 4250 unclassified gene predicted gene 10838
Tssr105597 11 107993983 to 107993992 9 + TSS region transcription start site region 105597
Tssr105598 11 107994006 to 107994025 19 + TSS region transcription start site region 105598
Gm11657 11 107994022 to 107994631 609 + antisense lncRNA gene predicted gene 11657
Tssr105599 11 107995405 to 107995411 6 + TSS region transcription start site region 105599
Mir7223 11 107996848 to 107996916 68 + miRNA gene microRNA 7223
Cpgi4044 11 108023124 to 108023462 338 CpG island CpG island 4044
Tssr111491 11 108044678 to 108044683 5 - TSS region transcription start site region 111491
Tssr105600 11 108062349 to 108062351 2 + TSS region transcription start site region 105600