Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:10687136-14137153

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195 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi2580 11 11113806 to 11114755 949 CpG island CpG island 2580
Tssr100341 11 11114125 to 11114148 23 + TSS region transcription start site region 100341
Vwc2 11 11114223 to 11268931 154708 + protein coding gene von Willebrand factor C domain containing 2
Cpgi2581 11 11115347 to 11116660 1313 CpG island CpG island 2581
Tssr100342 11 11115784 to 11115790 6 + TSS region transcription start site region 100342
Gm23065 11 11140514 to 11140643 129 + rRNA gene predicted gene, 23065
Tssr100343 11 11171325 to 11171327 2 + TSS region transcription start site region 100343
Gm39578 11 11251022 to 11254390 3368 - lncRNA gene predicted gene, 39578
Zpbp 11 11279626 to 11462408 182782 - protein coding gene zona pellucida binding protein
Gm12598 11 11312433 to 11313262 829 + pseudogene predicted gene 12598
Tssr106860 11 11404926 to 11404930 4 - TSS region transcription start site region 106860
Gm26458 11 11427385 to 11427512 127 - snoRNA gene predicted gene, 26458
Gm12599 11 11436984 to 11437775 791 + pseudogene predicted gene 12599
Tssr106861 11 11451200 to 11451204 4 - TSS region transcription start site region 106861
Cpgi2582 11 11461737 to 11462549 812 CpG island CpG island 2582
Tssr100344 11 11462079 to 11462103 24 + TSS region transcription start site region 100344
Tssr3427 11 11462202 to 11462207 5 - TSS region transcription start site region 3427
Tssr106862 11 11462210 to 11462243 33 - TSS region transcription start site region 106862
Tssr106863 11 11462250 to 11462272 22 - TSS region transcription start site region 106863
Tssr106864 11 11462415 to 11462426 11 - TSS region transcription start site region 106864
Tssr106865 11 11462436 to 11462446 10 - TSS region transcription start site region 106865
Tssr100345 11 11462490 to 11462528 38 + TSS region transcription start site region 100345
Spata48 11 11463247 to 11515192 51945 + protein coding gene spermatogenesis associated 48
Tssr100346 11 11464020 to 11464056 36 + TSS region transcription start site region 100346
Tssr100347 11 11484553 to 11484568 15 + TSS region transcription start site region 100347
Tssr106866 11 11519450 to 11519457 7 - TSS region transcription start site region 106866
Tssr100348 11 11522213 to 11522251 38 + TSS region transcription start site region 100348
Gm29945 11 11552098 to 11558891 6793 - lncRNA gene predicted gene, 29945
Tssr100349 11 11557388 to 11557398 10 + TSS region transcription start site region 100349
Tssr100350 11 11557401 to 11557431 30 + TSS region transcription start site region 100350
Gm11998 11 11557421 to 11579460 22039 + antisense lncRNA gene predicted gene 11998
Tssr100351 11 11557932 to 11557943 11 + TSS region transcription start site region 100351
Tssr100352 11 11558007 to 11558026 19 + TSS region transcription start site region 100352
Tssr106867 11 11565310 to 11565315 5 - TSS region transcription start site region 106867
4930512M02Rik 11 11589223 to 11627835 38612 - protein coding gene RIKEN cDNA 4930512M02 gene
Tssr100353 11 11641101 to 11641108 7 + TSS region transcription start site region 100353
Gm11999 11 11642203 to 11685400 43197 - lncRNA gene predicted gene 11999
Tssr106868 11 11657226 to 11657262 36 - TSS region transcription start site region 106868
Tssr100354 11 11667768 to 11667791 23 + TSS region transcription start site region 100354
Tssr106869 11 11675214 to 11675221 7 - TSS region transcription start site region 106869
Cpgi2583 11 11684583 to 11686691 2108 CpG island CpG island 2583
Tssr100355 11 11684950 to 11684955 5 + TSS region transcription start site region 100355
Tssr100356 11 11684967 to 11685027 60 + TSS region transcription start site region 100356
Ikzf1 11 11685003 to 11772926 87923 + protein coding gene IKAROS family zinc finger 1
Tssr100357 11 11685542 to 11685553 11 + TSS region transcription start site region 100357
Tssr106870 11 11685624 to 11685655 31 - TSS region transcription start site region 106870
Tssr100358 11 11685675 to 11685742 67 + TSS region transcription start site region 100358
Tssr3428 11 11685906 to 11685907 1 + TSS region transcription start site region 3428
Tssr100359 11 11685909 to 11685947 38 + TSS region transcription start site region 100359
Tssr100360 11 11686215 to 11686282 67 + TSS region transcription start site region 100360
Tssr100361 11 11686297 to 11686322 25 + TSS region transcription start site region 100361
Tssr100362 11 11686398 to 11686403 5 + TSS region transcription start site region 100362
Tssr106871 11 11686705 to 11686736 31 - TSS region transcription start site region 106871
Tssr100363 11 11687717 to 11687732 15 + TSS region transcription start site region 100363
Tssr100364 11 11687747 to 11687756 9 + TSS region transcription start site region 100364
Tssr106872 11 11689763 to 11689769 6 - TSS region transcription start site region 106872
Tssr100365 11 11689944 to 11689947 3 + TSS region transcription start site region 100365
Tssr100366 11 11690078 to 11690079 1 + TSS region transcription start site region 100366
Tssr100367 11 11690082 to 11690103 21 + TSS region transcription start site region 100367
Tssr100368 11 11690114 to 11690135 21 + TSS region transcription start site region 100368
Tssr100369 11 11690137 to 11690184 47 + TSS region transcription start site region 100369
Tssr100370 11 11690185 to 11690197 12 + TSS region transcription start site region 100370
Tssr100371 11 11690202 to 11690213 11 + TSS region transcription start site region 100371
Tssr100372 11 11690267 to 11690280 13 + TSS region transcription start site region 100372
Tssr100373 11 11690291 to 11690312 21 + TSS region transcription start site region 100373
Tssr100374 11 11690313 to 11690329 16 + TSS region transcription start site region 100374
Tssr100375 11 11690408 to 11690421 13 + TSS region transcription start site region 100375
Tssr100376 11 11690449 to 11690468 19 + TSS region transcription start site region 100376
Tssr100377 11 11690833 to 11690848 15 + TSS region transcription start site region 100377
Tssr100378 11 11692003 to 11692009 6 + TSS region transcription start site region 100378
BC028789 11 11692607 to 11694765 2158 unclassified gene cDNA sequence BC028789
Tssr100379 11 11692837 to 11692846 9 + TSS region transcription start site region 100379
Tssr106873 11 11694269 to 11694284 15 - TSS region transcription start site region 106873
Gm12000 11 11695133 to 11696439 1306 - antisense lncRNA gene predicted gene 12000
Tssr106874 11 11699529 to 11699536 7 - TSS region transcription start site region 106874
Tssr3429 11 11699547 to 11699563 16 - TSS region transcription start site region 3429
Tssr100380 11 11701642 to 11701644 2 + TSS region transcription start site region 100380
Tssr100381 11 11719762 to 11719776 14 + TSS region transcription start site region 100381
Tssr106875 11 11725577 to 11725597 20 - TSS region transcription start site region 106875
Tssr100382 11 11741843 to 11741858 15 + TSS region transcription start site region 100382
Tssr100383 11 11744127 to 11744130 3 + TSS region transcription start site region 100383
Tssr100384 11 11765077 to 11765082 5 + TSS region transcription start site region 100384
Cpgi2584 11 11769135 to 11769614 479 CpG island CpG island 2584
Tssr100385 11 11769183 to 11769185 2 + TSS region transcription start site region 100385
Tssr100386 11 11769553 to 11769565 12 + TSS region transcription start site region 100386
Tssr106876 11 11769846 to 11769857 11 - TSS region transcription start site region 106876
Tssr106877 11 11769924 to 11769939 15 - TSS region transcription start site region 106877
Tssr100387 11 11771444 to 11771457 13 + TSS region transcription start site region 100387
Fignl1 11 11800288 to 11808995 8707 - protein coding gene fidgetin-like 1
Cpgi2585 11 11808544 to 11809397 853 CpG island CpG island 2585
Tssr106878 11 11808923 to 11808967 44 - TSS region transcription start site region 106878
Tssr100388 11 11809074 to 11809088 14 + TSS region transcription start site region 100388
Tssr100389 11 11809090 to 11809103 13 + TSS region transcription start site region 100389
Tssr100390 11 11809519 to 11809526 7 + TSS region transcription start site region 100390
Tssr100391 11 11809805 to 11809808 3 + TSS region transcription start site region 100391
Ddc 11 11814101 to 11898144 84043 - protein coding gene dopa decarboxylase
Tssr106879 11 11821569 to 11821571 2 - TSS region transcription start site region 106879
Tssr100392 11 11821825 to 11821847 22 + TSS region transcription start site region 100392
Tssr106880 11 11822946 to 11822963 17 - TSS region transcription start site region 106880
Tssr100393 11 11829397 to 11829410 13 + TSS region transcription start site region 100393
Tssr106881 11 11836212 to 11836231 19 - TSS region transcription start site region 106881
Tssr106882 11 11836259 to 11836276 17 - TSS region transcription start site region 106882
Tssr106883 11 11853551 to 11853563 12 - TSS region transcription start site region 106883
Tssr106884 11 11853587 to 11853601 14 - TSS region transcription start site region 106884
1700042O10Rik 11 11868123 to 11885321 17198 + antisense lncRNA gene RIKEN cDNA 1700042O10 gene
Tssr106885 11 11873214 to 11873265 51 - TSS region transcription start site region 106885
Tssr106886 11 11881137 to 11881147 10 - TSS region transcription start site region 106886
Tssr106887 11 11882292 to 11882295 3 - TSS region transcription start site region 106887
Tssr106888 11 11889680 to 11889684 4 - TSS region transcription start site region 106888
Tssr106889 11 11890368 to 11890379 11 - TSS region transcription start site region 106889
Tssr106890 11 11890394 to 11890407 13 - TSS region transcription start site region 106890
Tssr106891 11 11897701 to 11897708 7 - TSS region transcription start site region 106891
Tssr106892 11 11898062 to 11898080 18 - TSS region transcription start site region 106892
Tssr106893 11 11898092 to 11898150 58 - TSS region transcription start site region 106893
Gm25058 11 11913621 to 11913748 127 - snoRNA gene predicted gene, 25058
Grb10 11 11930499 to 12037422 106923 - protein coding gene growth factor receptor bound protein 10
Tssr106894 11 11931634 to 11931645 11 - TSS region transcription start site region 106894
Tssr106895 11 11931697 to 11931710 13 - TSS region transcription start site region 106895
Tssr106896 11 11931722 to 11931735 13 - TSS region transcription start site region 106896
Tssr106897 11 11931760 to 11931844 84 - TSS region transcription start site region 106897
Tssr106898 11 11931880 to 11931897 17 - TSS region transcription start site region 106898
Tssr106899 11 11932253 to 11932264 11 - TSS region transcription start site region 106899
Tssr106900 11 11932563 to 11932572 9 - TSS region transcription start site region 106900
Tssr106901 11 11932843 to 11932855 12 - TSS region transcription start site region 106901
Tssr106902 11 11932887 to 11932903 16 - TSS region transcription start site region 106902
Tssr106903 11 11933372 to 11933406 34 - TSS region transcription start site region 106903
Tssr106904 11 11933458 to 11933498 40 - TSS region transcription start site region 106904
Tssr106905 11 11944906 to 11944921 15 - TSS region transcription start site region 106905
Tssr106906 11 11945540 to 11945559 19 - TSS region transcription start site region 106906
Tssr106907 11 11957048 to 11957086 38 - TSS region transcription start site region 106907
2610104F20Rik 11 11958406 to 11967116 8710 - lncRNA gene RIKEN cDNA 2610104F20 gene
Tssr106908 11 11962026 to 11962037 11 - TSS region transcription start site region 106908
Tssr106909 11 11967558 to 11967609 51 - TSS region transcription start site region 106909
Tssr106910 11 11970540 to 11970554 14 - TSS region transcription start site region 106910
Tssr106911 11 12004318 to 12004322 4 - TSS region transcription start site region 106911
Tssr106912 11 12009492 to 12009495 3 - TSS region transcription start site region 106912
Cpgi2586 11 12025419 to 12027039 1620 CpG island CpG island 2586
Tssr106913 11 12025849 to 12025883 34 - TSS region transcription start site region 106913
Tssr106914 11 12026237 to 12026249 12 - TSS region transcription start site region 106914
Tssr106915 11 12026772 to 12026823 51 - TSS region transcription start site region 106915
Tssr106916 11 12027958 to 12027973 15 - TSS region transcription start site region 106916
Tssr106917 11 12028908 to 12028911 3 - TSS region transcription start site region 106917
Tssr3430 11 12035990 to 12036008 18 - TSS region transcription start site region 3430
Cpgi2587 11 12036330 to 12038138 1808 CpG island CpG island 2587
Tssr106918 11 12037349 to 12037360 11 - TSS region transcription start site region 106918
Tssr106919 11 12037391 to 12037407 16 - TSS region transcription start site region 106919
Tssr100394 11 12037644 to 12037659 15 + TSS region transcription start site region 100394
Gm30423 11 12040686 to 12047122 6436 - lncRNA gene predicted gene, 30423
Tssr100395 11 12053934 to 12053938 4 + TSS region transcription start site region 100395
Gm24036 11 12054148 to 12054303 155 - snRNA gene predicted gene, 24036
Tssr106920 11 12054299 to 12054307 8 - TSS region transcription start site region 106920
Gm12001 11 12125090 to 12127998 2908 - pseudogene predicted gene 12001
Cobl 11 12236676 to 12464960 228284 - protein coding gene cordon-bleu WH2 repeat
Gm39581 11 12242309 to 12263293 20984 + lncRNA gene predicted gene, 39581
Tssr106921 11 12309732 to 12309746 14 - TSS region transcription start site region 106921
Tssr106922 11 12309760 to 12309771 11 - TSS region transcription start site region 106922
Gm12002 11 12313365 to 12346088 32723 + antisense lncRNA gene predicted gene 12002
Tssr100396 11 12314509 to 12314529 20 + TSS region transcription start site region 100396
Tailq1 11 12318637 to 68609504 56290867 QTL tail length QTL 1
Egq4 11 12318637 to 68609504 56290867 QTL early growth QTL 4
Epfq4 11 12318637 to 68609504 56290867 QTL epididymal fat pad weight QTL 4
W10q2 11 12318637 to 68609504 56290867 QTL weight 10 weeks QTL 2
Lmrq4 11 12318637 to 69794121 57475484 QTL Leishmania major resistance QTL 4
Scfq3 11 12318637 to 68609504 56290867 QTL subcutaneous fat pad weight QTL 3
W3q4 11 12318637 to 68609504 56290867 QTL weight 3 weeks QTL 4
W6q3 11 12318637 to 68609504 56290867 QTL weight 6 weeks QTL 3
D11Mit2 11 12318637 to 12318743 106 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 2
Eae44 11 12318637 to 40060013 27741376 QTL experimental allergic encephalomyelitis susceptibility 44
Kidpq1 11 12318637 to 68609504 56290867 QTL kidney weight percentage QTL 1
Lgaq1 11 12318637 to 68609504 56290867 QTL late growth adjusted QTL 1
Lgq1 11 12318637 to 68609504 56290867 QTL late growth QTL 1
Orq2 11 12318637 to 68609504 56290867 QTL ovulation rate QTL 2
Tssr106923 11 12354027 to 12354032 5 - TSS region transcription start site region 106923
Gm30596 11 12379434 to 12388976 9542 + lncRNA gene predicted gene, 30596
Tssr106924 11 12412136 to 12412153 17 - TSS region transcription start site region 106924
Tssr106925 11 12428969 to 12428991 22 - TSS region transcription start site region 106925
Tssr106926 11 12429015 to 12429028 13 - TSS region transcription start site region 106926
Cpgi2588 11 12464272 to 12465562 1290 CpG island CpG island 2588
Tssr106927 11 12464746 to 12464759 13 - TSS region transcription start site region 106927
Tssr106928 11 12464819 to 12464845 26 - TSS region transcription start site region 106928
Tssr106929 11 12464850 to 12464879 29 - TSS region transcription start site region 106929
Tssr106930 11 12464881 to 12464997 116 - TSS region transcription start site region 106930
Gm19314 11 12557219 to 12557644 425 - pseudogene predicted gene, 19314
Tssr106931 11 12557809 to 12557822 13 - TSS region transcription start site region 106931
D11Mit204 11 12610927 to 12611067 140 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 204
Gm22156 11 12676933 to 12677073 140 + snoRNA gene predicted gene, 22156
D11Mit150 11 12692718 to 12692908 190 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 150
Gm22789 11 12692813 to 12692942 129 + snoRNA gene predicted gene, 22789
Gm12003 11 12936834 to 12937938 1104 - pseudogene predicted gene 12003
Gm12004 11 12997666 to 12998380 714 + pseudogene predicted gene 12004
D11Mit133 11 13452477 to 13452616 139 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 133
Gm30770 11 13941722 to 13955732 14010 - lncRNA gene predicted gene, 30770
4930554G24Rik 11 14072103 to 14179041 106938 - lincRNA gene RIKEN cDNA 4930554G24 gene
Tssr106932 11 14120419 to 14120425 6 - TSS region transcription start site region 106932
Lvrq7 11 118131898 to 12318637 -105813261 QTL liver weight QTL 7