Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:106826299-107336317

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smurf2 11 106820066 to 106920715 100649 - protein coding gene SMAD specific E3 ubiquitin protein ligase 2
Tssr111419 11 106877896 to 106877899 3 - TSS region transcription start site region 111419
Tssr111420 11 106897140 to 106897144 4 - TSS region transcription start site region 111420
Tssr111421 11 106900031 to 106900035 4 - TSS region transcription start site region 111421
Tssr111422 11 106913627 to 106913631 4 - TSS region transcription start site region 111422
Cpgi4029 11 106919646 to 106921188 1542 CpG island CpG island 4029
Tssr111423 11 106920608 to 106920643 35 - TSS region transcription start site region 111423
Gm27322 11 106920658 to 106920761 103 - miRNA gene predicted gene, 27322
Tssr111424 11 106920681 to 106920735 54 - TSS region transcription start site region 111424
D11Mit223 11 106927601 to 106927747 146 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 223
Tssr111425 11 106928030 to 106928051 21 - TSS region transcription start site region 111425
Gm11707 11 106972058 to 106973090 1032 - lincRNA gene predicted gene 11707
Gm8339 11 106972083 to 106973174 1091 + pseudogene predicted gene 8339
Tssr111426 11 106973097 to 106973117 20 - TSS region transcription start site region 111426
Tssr111427 11 106973126 to 106973138 12 - TSS region transcription start site region 111427
Ewc5 11 106978425 to 106978425 0 QTL ethanol withdrawal and consumption 5
Kpna2 11 106988629 to 106999525 10896 - protein coding gene karyopherin (importin) alpha 2
Tssr111428 11 106998441 to 106998446 5 - TSS region transcription start site region 111428
Tssr111429 11 106998449 to 106998463 14 - TSS region transcription start site region 111429
Tssr111430 11 106998465 to 106998482 17 - TSS region transcription start site region 111430
Tssr111431 11 106998483 to 106998491 8 - TSS region transcription start site region 111431
Cpgi4030 11 106998666 to 106999788 1122 CpG island CpG island 4030
Tssr111432 11 106999461 to 106999473 12 - TSS region transcription start site region 111432
Tssr111433 11 106999482 to 106999503 21 - TSS region transcription start site region 111433
Tssr105560 11 106999678 to 106999683 5 + TSS region transcription start site region 105560
Tssr105561 11 106999690 to 106999728 38 + TSS region transcription start site region 105561
Gm11708 11 107003912 to 107004740 828 - pseudogene predicted gene 11708
Gm39424 11 107010191 to 107013077 2886 + lncRNA gene predicted gene, 39424
Cpgi4031 11 107012603 to 107012969 366 CpG island CpG island 4031
Tssr111434 11 107012682 to 107012729 47 - TSS region transcription start site region 111434
n-TRccg1 11 107012866 to 107012938 72 + tRNA gene nuclear encoded tRNA arginine 1 (anticodon CCG)
Tssr105562 11 107012901 to 107012905 4 + TSS region transcription start site region 105562
Tssr111435 11 107015676 to 107015680 4 - TSS region transcription start site region 111435
Tssr105563 11 107022736 to 107022743 7 + TSS region transcription start site region 105563
Tssr105564 11 107025587 to 107025598 11 + TSS region transcription start site region 105564
Tssr105565 11 107025604 to 107025630 26 + TSS region transcription start site region 105565
1810010H24Rik 11 107025681 to 107030443 4762 + protein coding gene RIKEN cDNA 1810010H24 gene
Cpgi4032 11 107025689 to 107026307 618 CpG island CpG island 4032
Tssr105566 11 107025853 to 107025892 39 + TSS region transcription start site region 105566
Tssr105567 11 107026050 to 107026073 23 + TSS region transcription start site region 105567
Gm36273 11 107026883 to 107027739 856 - lncRNA gene predicted gene, 36273
Cpgi4033 11 107027621 to 107028713 1092 CpG island CpG island 4033
Cpgi4034 11 107029596 to 107029829 233 CpG island CpG island 4034
Bptf 11 107033081 to 107131922 98841 - protein coding gene bromodomain PHD finger transcription factor
Tssr111436 11 107080834 to 107080859 25 - TSS region transcription start site region 111436
Tssr111437 11 107081299 to 107081317 18 - TSS region transcription start site region 111437
Gm4098 11 107100789 to 107105384 4595 pseudogene predicted gene 4098
Cpgi4035 11 107131128 to 107132741 1613 CpG island CpG island 4035
Tssr111438 11 107131497 to 107131540 43 - TSS region transcription start site region 111438
Tssr111439 11 107131889 to 107131900 11 - TSS region transcription start site region 111439
Tssr111440 11 107131943 to 107131954 11 - TSS region transcription start site region 111440
Tssr111441 11 107132114 to 107132166 52 - TSS region transcription start site region 111441
Tssr111442 11 107132173 to 107132201 28 - TSS region transcription start site region 111442
Tssr111443 11 107132644 to 107132661 17 - TSS region transcription start site region 111443
Tssr111444 11 107137718 to 107137743 25 - TSS region transcription start site region 111444
Tssr105568 11 107137794 to 107137840 46 + TSS region transcription start site region 105568
Gm11715 11 107157408 to 107167125 9717 + antisense lncRNA gene predicted gene 11715
Nol11 11 107166663 to 107189381 22718 - protein coding gene nucleolar protein 11
Rps12-ps26 11 107171900 to 107172232 332 - pseudogene ribosomal protein S12, pseudogene 26
Gm18096 11 107182563 to 107183365 802 + pseudogene predicted gene, 18096
Cpgi4036 11 107188619 to 107189549 930 CpG island CpG island 4036
Tssr111445 11 107189255 to 107189307 52 - TSS region transcription start site region 111445
Tssr111446 11 107189325 to 107189340 15 - TSS region transcription start site region 111446
Tssr105569 11 107189431 to 107189442 11 + TSS region transcription start site region 105569
Gm39425 11 107189431 to 107205839 16408 + lncRNA gene predicted gene, 39425
Gm11718 11 107191094 to 107191630 536 + pseudogene predicted gene 11718
Tssr105570 11 107201916 to 107201930 14 + TSS region transcription start site region 105570
Tssr105571 11 107201972 to 107201983 11 + TSS region transcription start site region 105571
Pitpnc1 11 107207892 to 107470699 262807 - protein coding gene phosphatidylinositol transfer protein, cytoplasmic 1
Tssr111447 11 107212275 to 107212279 4 - TSS region transcription start site region 111447
Tssr111448 11 107213960 to 107213965 5 - TSS region transcription start site region 111448
5830433D23Rik 11 107262659 to 107264101 1442 unclassified gene RIKEN cDNA 5830433D23 gene
Tssr111449 11 107289223 to 107289227 4 - TSS region transcription start site region 111449
Tssr111450 11 107319246 to 107319269 23 - TSS region transcription start site region 111450
Gm11719 11 107330708 to 107331058 350 + pseudogene predicted gene 11719
Tssr105572 11 107335485 to 107335500 15 + TSS region transcription start site region 105572
Tssr105573 11 107335915 to 107335929 14 + TSS region transcription start site region 105573
Tssr105574 11 107335942 to 107335958 16 + TSS region transcription start site region 105574
Tssr105575 11 107336003 to 107336011 8 + TSS region transcription start site region 105575