Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:106782140-107012144

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59 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ddx5 11 106780355 to 106789180 8825 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
Mir3064 11 106782693 to 106782759 66 - miRNA gene microRNA 3064
Tssr111401 11 106782854 to 106782865 11 - TSS region transcription start site region 111401
Tssr111402 11 106782870 to 106782884 14 - TSS region transcription start site region 111402
Tssr111403 11 106782933 to 106782954 21 - TSS region transcription start site region 111403
Gm25994 11 106783171 to 106783271 100 - miRNA gene predicted gene, 25994
Tssr111404 11 106783343 to 106783362 19 - TSS region transcription start site region 111404
Tssr111405 11 106783949 to 106783969 20 - TSS region transcription start site region 111405
Tssr111406 11 106786718 to 106786767 49 - TSS region transcription start site region 111406
Cpgi4028 11 106787295 to 106789607 2312 CpG island CpG island 4028
Tssr111407 11 106787545 to 106787575 30 - TSS region transcription start site region 111407
Tssr105555 11 106787688 to 106787713 25 + TSS region transcription start site region 105555
Tssr111408 11 106788060 to 106788063 3 - TSS region transcription start site region 111408
Tssr111409 11 106788486 to 106788500 14 - TSS region transcription start site region 111409
Tssr105556 11 106788598 to 106788677 79 + TSS region transcription start site region 105556
Tssr111410 11 106788642 to 106788649 7 - TSS region transcription start site region 111410
Tssr105557 11 106788678 to 106788706 28 + TSS region transcription start site region 105557
Tssr105558 11 106788713 to 106788731 18 + TSS region transcription start site region 105558
Tssr111411 11 106788845 to 106788882 37 - TSS region transcription start site region 111411
Tssr111412 11 106788901 to 106788913 12 - TSS region transcription start site region 111412
Tssr111413 11 106788916 to 106788929 13 - TSS region transcription start site region 111413
Tssr3707 11 106788917 to 106788972 55 + TSS region transcription start site region 3707
Tssr111414 11 106789083 to 106789109 26 - TSS region transcription start site region 111414
Tssr111415 11 106789115 to 106789133 18 - TSS region transcription start site region 111415
Tssr111416 11 106789135 to 106789152 17 - TSS region transcription start site region 111416
Tssr111417 11 106789157 to 106789192 35 - TSS region transcription start site region 111417
Cep95 11 106789226 to 106818861 29635 + protein coding gene centrosomal protein 95
Tssr105559 11 106789235 to 106789335 100 + TSS region transcription start site region 105559
Tssr111418 11 106789436 to 106789454 18 - TSS region transcription start site region 111418
D11Mit290 11 106811877 to 106812051 174 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 290
Gm11706 11 106814670 to 106816008 1338 - antisense lncRNA gene predicted gene 11706
Smurf2 11 106820066 to 106920715 100649 - protein coding gene SMAD specific E3 ubiquitin protein ligase 2
Tssr111419 11 106877896 to 106877899 3 - TSS region transcription start site region 111419
Tssr111420 11 106897140 to 106897144 4 - TSS region transcription start site region 111420
Tssr111421 11 106900031 to 106900035 4 - TSS region transcription start site region 111421
Tssr111422 11 106913627 to 106913631 4 - TSS region transcription start site region 111422
Cpgi4029 11 106919646 to 106921188 1542 CpG island CpG island 4029
Tssr111423 11 106920608 to 106920643 35 - TSS region transcription start site region 111423
Gm27322 11 106920658 to 106920761 103 - miRNA gene predicted gene, 27322
Tssr111424 11 106920681 to 106920735 54 - TSS region transcription start site region 111424
D11Mit223 11 106927601 to 106927747 146 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 223
Tssr111425 11 106928030 to 106928051 21 - TSS region transcription start site region 111425
Gm11707 11 106972058 to 106973090 1032 - lincRNA gene predicted gene 11707
Gm8339 11 106972083 to 106973174 1091 + pseudogene predicted gene 8339
Tssr111426 11 106973097 to 106973117 20 - TSS region transcription start site region 111426
Tssr111427 11 106973126 to 106973138 12 - TSS region transcription start site region 111427
Ewc5 11 106978425 to 106978425 0 QTL ethanol withdrawal and consumption 5
Kpna2 11 106988629 to 106999525 10896 - protein coding gene karyopherin (importin) alpha 2
Tssr111428 11 106998441 to 106998446 5 - TSS region transcription start site region 111428
Tssr111429 11 106998449 to 106998463 14 - TSS region transcription start site region 111429
Tssr111430 11 106998465 to 106998482 17 - TSS region transcription start site region 111430
Tssr111431 11 106998483 to 106998491 8 - TSS region transcription start site region 111431
Cpgi4030 11 106998666 to 106999788 1122 CpG island CpG island 4030
Tssr111432 11 106999461 to 106999473 12 - TSS region transcription start site region 111432
Tssr111433 11 106999482 to 106999503 21 - TSS region transcription start site region 111433
Tssr105560 11 106999678 to 106999683 5 + TSS region transcription start site region 105560
Tssr105561 11 106999690 to 106999728 38 + TSS region transcription start site region 105561
Gm11708 11 107003912 to 107004740 828 - pseudogene predicted gene 11708
Gm39424 11 107010191 to 107013077 2886 + lncRNA gene predicted gene, 39424