Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:106400251-107030293

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163 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ern1 11 106397620 to 106487796 90176 - protein coding gene endoplasmic reticulum (ER) to nucleus signalling 1
Tssr111348 11 106411743 to 106411756 13 - TSS region transcription start site region 111348
Tssr105535 11 106416796 to 106416805 9 + TSS region transcription start site region 105535
Tssr105536 11 106416905 to 106416911 6 + TSS region transcription start site region 105536
Tssr111349 11 106486891 to 106486895 4 - TSS region transcription start site region 111349
Cpgi4023 11 106486922 to 106488366 1444 CpG island CpG island 4023
Tssr111350 11 106487758 to 106487765 7 - TSS region transcription start site region 111350
Tssr111351 11 106487797 to 106487821 24 - TSS region transcription start site region 111351
Tssr111352 11 106487833 to 106487880 47 - TSS region transcription start site region 111352
Tssr111353 11 106488310 to 106488329 19 - TSS region transcription start site region 111353
Tssr111354 11 106488418 to 106488435 17 - TSS region transcription start site region 111354
Cpgi4024 11 106500754 to 106501484 730 CpG island CpG island 4024
Gm36220 11 106500815 to 106501213 398 + lncRNA gene predicted gene, 36220
Tssr105537 11 106500908 to 106500925 17 + TSS region transcription start site region 105537
Snord104 11 106500993 to 106501062 69 + snoRNA gene small nucleolar RNA, C/D box 104
Gm22711 11 106501245 to 106501377 132 + snoRNA gene predicted gene, 22711
Tex2 11 106502147 to 106613423 111276 - protein coding gene testis expressed gene 2
Tssr111355 11 106503299 to 106503303 4 - TSS region transcription start site region 111355
Tssr111356 11 106507068 to 106507106 38 - TSS region transcription start site region 111356
Gm17925 11 106509184 to 106509794 610 + pseudogene predicted gene, 17925
Tssr111357 11 106514237 to 106514241 4 - TSS region transcription start site region 111357
Tssr105538 11 106516369 to 106516379 10 + TSS region transcription start site region 105538
Tssr111358 11 106530097 to 106530121 24 - TSS region transcription start site region 111358
Tssr105539 11 106530375 to 106530380 5 + TSS region transcription start site region 105539
Tssr105540 11 106549625 to 106549626 1 + TSS region transcription start site region 105540
Tssr111359 11 106568419 to 106568433 14 - TSS region transcription start site region 111359
Tssr111360 11 106572182 to 106572200 18 - TSS region transcription start site region 111360
Tssr111361 11 106579074 to 106579087 13 - TSS region transcription start site region 111361
Tssr111362 11 106579093 to 106579105 12 - TSS region transcription start site region 111362
Tssr111363 11 106579111 to 106579141 30 - TSS region transcription start site region 111363
Tssr111364 11 106580594 to 106580609 15 - TSS region transcription start site region 111364
Tssr105541 11 106580697 to 106580716 19 + TSS region transcription start site region 105541
Tssr111365 11 106587937 to 106587948 11 - TSS region transcription start site region 111365
Tssr111366 11 106588870 to 106588881 11 - TSS region transcription start site region 111366
Cpgi4025 11 106612053 to 106613346 1293 CpG island CpG island 4025
Tssr111367 11 106612928 to 106612973 45 - TSS region transcription start site region 111367
Tssr111368 11 106612991 to 106613007 16 - TSS region transcription start site region 111368
Tssr111369 11 106613013 to 106613024 11 - TSS region transcription start site region 111369
Tssr111370 11 106613032 to 106613052 20 - TSS region transcription start site region 111370
Tssr111371 11 106613053 to 106613064 11 - TSS region transcription start site region 111371
Tssr111372 11 106613370 to 106613384 14 - TSS region transcription start site region 111372
Tssr111373 11 106615628 to 106615660 32 - TSS region transcription start site region 111373
Pecam1 11 106654213 to 106750623 96410 - protein coding gene platelet/endothelial cell adhesion molecule 1
Tssr111374 11 106665445 to 106665449 4 - TSS region transcription start site region 111374
Tssr111375 11 106674649 to 106674671 22 - TSS region transcription start site region 111375
Tssr105542 11 106674962 to 106675000 38 + TSS region transcription start site region 105542
Tssr105543 11 106686066 to 106686068 2 + TSS region transcription start site region 105543
Tssr105544 11 106688658 to 106688665 7 + TSS region transcription start site region 105544
Tssr105545 11 106688666 to 106688676 10 + TSS region transcription start site region 105545
Tssr111376 11 106688972 to 106688976 4 - TSS region transcription start site region 111376
Cpgi4026 11 106699329 to 106699778 449 CpG island CpG island 4026
Tssr111377 11 106715059 to 106715073 14 - TSS region transcription start site region 111377
Tssr111378 11 106715076 to 106715099 23 - TSS region transcription start site region 111378
Tssr111379 11 106715203 to 106715214 11 - TSS region transcription start site region 111379
Tssr111380 11 106715236 to 106715247 11 - TSS region transcription start site region 111380
Tssr111381 11 106715251 to 106715293 42 - TSS region transcription start site region 111381
Tssr105546 11 106723223 to 106723239 16 + TSS region transcription start site region 105546
Tssr105547 11 106723253 to 106723268 15 + TSS region transcription start site region 105547
Tssr111382 11 106724421 to 106724434 13 - TSS region transcription start site region 111382
Tssr111383 11 106725264 to 106725270 6 - TSS region transcription start site region 111383
Tssr111384 11 106732544 to 106732557 13 - TSS region transcription start site region 111384
Tssr111385 11 106736411 to 106736441 30 - TSS region transcription start site region 111385
Tssr111386 11 106736448 to 106736466 18 - TSS region transcription start site region 111386
Tssr111387 11 106736475 to 106736486 11 - TSS region transcription start site region 111387
Tssr111388 11 106736499 to 106736506 7 - TSS region transcription start site region 111388
Tssr111389 11 106750185 to 106750202 17 - TSS region transcription start site region 111389
Tssr111390 11 106750273 to 106750346 73 - TSS region transcription start site region 111390
Tssr111391 11 106750472 to 106750486 14 - TSS region transcription start site region 111391
Tssr111392 11 106750649 to 106750660 11 - TSS region transcription start site region 111392
Tssr105548 11 106750675 to 106750690 15 + TSS region transcription start site region 105548
Tssr3706 11 106751104 to 106751120 16 - TSS region transcription start site region 3706
Milr1 11 106751226 to 106768794 17568 + protein coding gene mast cell immunoglobulin like receptor 1
Tssr105549 11 106751242 to 106751251 9 + TSS region transcription start site region 105549
Tssr105550 11 106751255 to 106751280 25 + TSS region transcription start site region 105550
Tssr105551 11 106751609 to 106751647 38 + TSS region transcription start site region 105551
Tssr111393 11 106752208 to 106752223 15 - TSS region transcription start site region 111393
Tssr111394 11 106752227 to 106752238 11 - TSS region transcription start site region 111394
Tssr105552 11 106752461 to 106752472 11 + TSS region transcription start site region 105552
Tssr105553 11 106755115 to 106755135 20 + TSS region transcription start site region 105553
Tssr105554 11 106755148 to 106755184 36 + TSS region transcription start site region 105554
Gm25889 11 106764635 to 106764741 106 - snRNA gene predicted gene, 25889
Polg2 11 106768253 to 106779537 11284 - protein coding gene polymerase (DNA directed), gamma 2, accessory subunit
Tssr111395 11 106775942 to 106775954 12 - TSS region transcription start site region 111395
Tssr111396 11 106778814 to 106778819 5 - TSS region transcription start site region 111396
Cpgi4027 11 106778936 to 106779741 805 CpG island CpG island 4027
Tssr111397 11 106779457 to 106779472 15 - TSS region transcription start site region 111397
Tssr111398 11 106779483 to 106779559 76 - TSS region transcription start site region 111398
Ddx5 11 106780355 to 106789180 8825 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
Tssr111399 11 106781884 to 106781899 15 - TSS region transcription start site region 111399
Tssr111400 11 106782112 to 106782117 5 - TSS region transcription start site region 111400
Mir3064 11 106782693 to 106782759 66 - miRNA gene microRNA 3064
Tssr111401 11 106782854 to 106782865 11 - TSS region transcription start site region 111401
Tssr111402 11 106782870 to 106782884 14 - TSS region transcription start site region 111402
Tssr111403 11 106782933 to 106782954 21 - TSS region transcription start site region 111403
Gm25994 11 106783171 to 106783271 100 - miRNA gene predicted gene, 25994
Tssr111404 11 106783343 to 106783362 19 - TSS region transcription start site region 111404
Tssr111405 11 106783949 to 106783969 20 - TSS region transcription start site region 111405
Tssr111406 11 106786718 to 106786767 49 - TSS region transcription start site region 111406
Cpgi4028 11 106787295 to 106789607 2312 CpG island CpG island 4028
Tssr111407 11 106787545 to 106787575 30 - TSS region transcription start site region 111407
Tssr105555 11 106787688 to 106787713 25 + TSS region transcription start site region 105555
Tssr111408 11 106788060 to 106788063 3 - TSS region transcription start site region 111408
Tssr111409 11 106788486 to 106788500 14 - TSS region transcription start site region 111409
Tssr105556 11 106788598 to 106788677 79 + TSS region transcription start site region 105556
Tssr111410 11 106788642 to 106788649 7 - TSS region transcription start site region 111410
Tssr105557 11 106788678 to 106788706 28 + TSS region transcription start site region 105557
Tssr105558 11 106788713 to 106788731 18 + TSS region transcription start site region 105558
Tssr111411 11 106788845 to 106788882 37 - TSS region transcription start site region 111411
Tssr111412 11 106788901 to 106788913 12 - TSS region transcription start site region 111412
Tssr111413 11 106788916 to 106788929 13 - TSS region transcription start site region 111413
Tssr3707 11 106788917 to 106788972 55 + TSS region transcription start site region 3707
Tssr111414 11 106789083 to 106789109 26 - TSS region transcription start site region 111414
Tssr111415 11 106789115 to 106789133 18 - TSS region transcription start site region 111415
Tssr111416 11 106789135 to 106789152 17 - TSS region transcription start site region 111416
Tssr111417 11 106789157 to 106789192 35 - TSS region transcription start site region 111417
Cep95 11 106789226 to 106818861 29635 + protein coding gene centrosomal protein 95
Tssr105559 11 106789235 to 106789335 100 + TSS region transcription start site region 105559
Tssr111418 11 106789436 to 106789454 18 - TSS region transcription start site region 111418
D11Mit290 11 106811877 to 106812051 174 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 290
Gm11706 11 106814670 to 106816008 1338 - antisense lncRNA gene predicted gene 11706
Smurf2 11 106820066 to 106920715 100649 - protein coding gene SMAD specific E3 ubiquitin protein ligase 2
Tssr111419 11 106877896 to 106877899 3 - TSS region transcription start site region 111419
Tssr111420 11 106897140 to 106897144 4 - TSS region transcription start site region 111420
Tssr111421 11 106900031 to 106900035 4 - TSS region transcription start site region 111421
Tssr111422 11 106913627 to 106913631 4 - TSS region transcription start site region 111422
Cpgi4029 11 106919646 to 106921188 1542 CpG island CpG island 4029
Tssr111423 11 106920608 to 106920643 35 - TSS region transcription start site region 111423
Gm27322 11 106920658 to 106920761 103 - miRNA gene predicted gene, 27322
Tssr111424 11 106920681 to 106920735 54 - TSS region transcription start site region 111424
D11Mit223 11 106927601 to 106927747 146 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 223
Tssr111425 11 106928030 to 106928051 21 - TSS region transcription start site region 111425
Gm11707 11 106972058 to 106973090 1032 - lincRNA gene predicted gene 11707
Gm8339 11 106972083 to 106973174 1091 + pseudogene predicted gene 8339
Tssr111426 11 106973097 to 106973117 20 - TSS region transcription start site region 111426
Tssr111427 11 106973126 to 106973138 12 - TSS region transcription start site region 111427
Ewc5 11 106978425 to 106978425 0 QTL ethanol withdrawal and consumption 5
Kpna2 11 106988629 to 106999525 10896 - protein coding gene karyopherin (importin) alpha 2
Tssr111428 11 106998441 to 106998446 5 - TSS region transcription start site region 111428
Tssr111429 11 106998449 to 106998463 14 - TSS region transcription start site region 111429
Tssr111430 11 106998465 to 106998482 17 - TSS region transcription start site region 111430
Tssr111431 11 106998483 to 106998491 8 - TSS region transcription start site region 111431
Cpgi4030 11 106998666 to 106999788 1122 CpG island CpG island 4030
Tssr111432 11 106999461 to 106999473 12 - TSS region transcription start site region 111432
Tssr111433 11 106999482 to 106999503 21 - TSS region transcription start site region 111433
Tssr105560 11 106999678 to 106999683 5 + TSS region transcription start site region 105560
Tssr105561 11 106999690 to 106999728 38 + TSS region transcription start site region 105561
Gm11708 11 107003912 to 107004740 828 - pseudogene predicted gene 11708
Gm39424 11 107010191 to 107013077 2886 + lncRNA gene predicted gene, 39424
Cpgi4031 11 107012603 to 107012969 366 CpG island CpG island 4031
Tssr111434 11 107012682 to 107012729 47 - TSS region transcription start site region 111434
n-TRccg1 11 107012866 to 107012938 72 + tRNA gene nuclear encoded tRNA arginine 1 (anticodon CCG)
Tssr105562 11 107012901 to 107012905 4 + TSS region transcription start site region 105562
Tssr111435 11 107015676 to 107015680 4 - TSS region transcription start site region 111435
Tssr105563 11 107022736 to 107022743 7 + TSS region transcription start site region 105563
Tssr105564 11 107025587 to 107025598 11 + TSS region transcription start site region 105564
Tssr105565 11 107025604 to 107025630 26 + TSS region transcription start site region 105565
1810010H24Rik 11 107025681 to 107030443 4762 + protein coding gene RIKEN cDNA 1810010H24 gene
Cpgi4032 11 107025689 to 107026307 618 CpG island CpG island 4032
Tssr105566 11 107025853 to 107025892 39 + TSS region transcription start site region 105566
Tssr105567 11 107026050 to 107026073 23 + TSS region transcription start site region 105567
Gm36273 11 107026883 to 107027739 856 - lncRNA gene predicted gene, 36273
Cpgi4033 11 107027621 to 107028713 1092 CpG island CpG island 4033
Cpgi4034 11 107029596 to 107029829 233 CpG island CpG island 4034