Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:106352147-106763423

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scn4a 11 106318592 to 106353288 34696 - protein coding gene sodium channel, voltage-gated, type IV, alpha
Tssr105528 11 106365495 to 106365499 4 + TSS region transcription start site region 105528
Tssr111341 11 106365523 to 106365528 5 - TSS region transcription start site region 111341
Tssr111342 11 106365529 to 106365567 38 - TSS region transcription start site region 111342
Tssr105529 11 106374734 to 106374747 13 + TSS region transcription start site region 105529
Prr29 11 106374760 to 106377114 2354 + protein coding gene proline rich 29
Tssr105530 11 106374799 to 106374807 8 + TSS region transcription start site region 105530
Tssr105531 11 106374820 to 106374832 12 + TSS region transcription start site region 105531
Tssr105532 11 106374835 to 106374850 15 + TSS region transcription start site region 105532
Tssr105533 11 106375300 to 106375316 16 + TSS region transcription start site region 105533
Icam2 11 106377656 to 106388075 10419 - protein coding gene intercellular adhesion molecule 2
Tssr111343 11 106382554 to 106382612 58 - TSS region transcription start site region 111343
Tssr105534 11 106387219 to 106387240 21 + TSS region transcription start site region 105534
Tssr111344 11 106387780 to 106387797 17 - TSS region transcription start site region 111344
Tssr111345 11 106388066 to 106388105 39 - TSS region transcription start site region 111345
Tssr111346 11 106388106 to 106388117 11 - TSS region transcription start site region 111346
Tssr111347 11 106395803 to 106395814 11 - TSS region transcription start site region 111347
Ern1 11 106397620 to 106487796 90176 - protein coding gene endoplasmic reticulum (ER) to nucleus signalling 1
Tssr111348 11 106411743 to 106411756 13 - TSS region transcription start site region 111348
Tssr105535 11 106416796 to 106416805 9 + TSS region transcription start site region 105535
Tssr105536 11 106416905 to 106416911 6 + TSS region transcription start site region 105536
Tssr111349 11 106486891 to 106486895 4 - TSS region transcription start site region 111349
Cpgi4023 11 106486922 to 106488366 1444 CpG island CpG island 4023
Tssr111350 11 106487758 to 106487765 7 - TSS region transcription start site region 111350
Tssr111351 11 106487797 to 106487821 24 - TSS region transcription start site region 111351
Tssr111352 11 106487833 to 106487880 47 - TSS region transcription start site region 111352
Tssr111353 11 106488310 to 106488329 19 - TSS region transcription start site region 111353
Tssr111354 11 106488418 to 106488435 17 - TSS region transcription start site region 111354
Cpgi4024 11 106500754 to 106501484 730 CpG island CpG island 4024
Gm36220 11 106500815 to 106501213 398 + lncRNA gene predicted gene, 36220
Tssr105537 11 106500908 to 106500925 17 + TSS region transcription start site region 105537
Snord104 11 106500993 to 106501062 69 + snoRNA gene small nucleolar RNA, C/D box 104
Gm22711 11 106501245 to 106501377 132 + snoRNA gene predicted gene, 22711
Tex2 11 106502147 to 106613423 111276 - protein coding gene testis expressed gene 2
Tssr111355 11 106503299 to 106503303 4 - TSS region transcription start site region 111355
Tssr111356 11 106507068 to 106507106 38 - TSS region transcription start site region 111356
Gm17925 11 106509184 to 106509794 610 + pseudogene predicted gene, 17925
Tssr111357 11 106514237 to 106514241 4 - TSS region transcription start site region 111357
Tssr105538 11 106516369 to 106516379 10 + TSS region transcription start site region 105538
Tssr111358 11 106530097 to 106530121 24 - TSS region transcription start site region 111358
Tssr105539 11 106530375 to 106530380 5 + TSS region transcription start site region 105539
Tssr105540 11 106549625 to 106549626 1 + TSS region transcription start site region 105540
Tssr111359 11 106568419 to 106568433 14 - TSS region transcription start site region 111359
Tssr111360 11 106572182 to 106572200 18 - TSS region transcription start site region 111360
Tssr111361 11 106579074 to 106579087 13 - TSS region transcription start site region 111361
Tssr111362 11 106579093 to 106579105 12 - TSS region transcription start site region 111362
Tssr111363 11 106579111 to 106579141 30 - TSS region transcription start site region 111363
Tssr111364 11 106580594 to 106580609 15 - TSS region transcription start site region 111364
Tssr105541 11 106580697 to 106580716 19 + TSS region transcription start site region 105541
Tssr111365 11 106587937 to 106587948 11 - TSS region transcription start site region 111365
Tssr111366 11 106588870 to 106588881 11 - TSS region transcription start site region 111366
Cpgi4025 11 106612053 to 106613346 1293 CpG island CpG island 4025
Tssr111367 11 106612928 to 106612973 45 - TSS region transcription start site region 111367
Tssr111368 11 106612991 to 106613007 16 - TSS region transcription start site region 111368
Tssr111369 11 106613013 to 106613024 11 - TSS region transcription start site region 111369
Tssr111370 11 106613032 to 106613052 20 - TSS region transcription start site region 111370
Tssr111371 11 106613053 to 106613064 11 - TSS region transcription start site region 111371
Tssr111372 11 106613370 to 106613384 14 - TSS region transcription start site region 111372
Tssr111373 11 106615628 to 106615660 32 - TSS region transcription start site region 111373
Pecam1 11 106654213 to 106750623 96410 - protein coding gene platelet/endothelial cell adhesion molecule 1
Tssr111374 11 106665445 to 106665449 4 - TSS region transcription start site region 111374
Tssr111375 11 106674649 to 106674671 22 - TSS region transcription start site region 111375
Tssr105542 11 106674962 to 106675000 38 + TSS region transcription start site region 105542
Tssr105543 11 106686066 to 106686068 2 + TSS region transcription start site region 105543
Tssr105544 11 106688658 to 106688665 7 + TSS region transcription start site region 105544
Tssr105545 11 106688666 to 106688676 10 + TSS region transcription start site region 105545
Tssr111376 11 106688972 to 106688976 4 - TSS region transcription start site region 111376
Cpgi4026 11 106699329 to 106699778 449 CpG island CpG island 4026
Tssr111377 11 106715059 to 106715073 14 - TSS region transcription start site region 111377
Tssr111378 11 106715076 to 106715099 23 - TSS region transcription start site region 111378
Tssr111379 11 106715203 to 106715214 11 - TSS region transcription start site region 111379
Tssr111380 11 106715236 to 106715247 11 - TSS region transcription start site region 111380
Tssr111381 11 106715251 to 106715293 42 - TSS region transcription start site region 111381
Tssr105546 11 106723223 to 106723239 16 + TSS region transcription start site region 105546
Tssr105547 11 106723253 to 106723268 15 + TSS region transcription start site region 105547
Tssr111382 11 106724421 to 106724434 13 - TSS region transcription start site region 111382
Tssr111383 11 106725264 to 106725270 6 - TSS region transcription start site region 111383
Tssr111384 11 106732544 to 106732557 13 - TSS region transcription start site region 111384
Tssr111385 11 106736411 to 106736441 30 - TSS region transcription start site region 111385
Tssr111386 11 106736448 to 106736466 18 - TSS region transcription start site region 111386
Tssr111387 11 106736475 to 106736486 11 - TSS region transcription start site region 111387
Tssr111388 11 106736499 to 106736506 7 - TSS region transcription start site region 111388
Tssr111389 11 106750185 to 106750202 17 - TSS region transcription start site region 111389
Tssr111390 11 106750273 to 106750346 73 - TSS region transcription start site region 111390
Tssr111391 11 106750472 to 106750486 14 - TSS region transcription start site region 111391
Tssr111392 11 106750649 to 106750660 11 - TSS region transcription start site region 111392
Tssr105548 11 106750675 to 106750690 15 + TSS region transcription start site region 105548
Tssr3706 11 106751104 to 106751120 16 - TSS region transcription start site region 3706
Milr1 11 106751226 to 106768794 17568 + protein coding gene mast cell immunoglobulin like receptor 1
Tssr105549 11 106751242 to 106751251 9 + TSS region transcription start site region 105549
Tssr105550 11 106751255 to 106751280 25 + TSS region transcription start site region 105550
Tssr105551 11 106751609 to 106751647 38 + TSS region transcription start site region 105551
Tssr111393 11 106752208 to 106752223 15 - TSS region transcription start site region 111393
Tssr111394 11 106752227 to 106752238 11 - TSS region transcription start site region 111394
Tssr105552 11 106752461 to 106752472 11 + TSS region transcription start site region 105552
Tssr105553 11 106755115 to 106755135 20 + TSS region transcription start site region 105553
Tssr105554 11 106755148 to 106755184 36 + TSS region transcription start site region 105554