Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:106334635-107194741

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204 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scn4a 11 106318592 to 106353288 34696 - protein coding gene sodium channel, voltage-gated, type IV, alpha
Tssr111340 11 106345096 to 106345108 12 - TSS region transcription start site region 111340
Tssr105528 11 106365495 to 106365499 4 + TSS region transcription start site region 105528
Tssr111341 11 106365523 to 106365528 5 - TSS region transcription start site region 111341
Tssr111342 11 106365529 to 106365567 38 - TSS region transcription start site region 111342
Tssr105529 11 106374734 to 106374747 13 + TSS region transcription start site region 105529
Prr29 11 106374760 to 106377114 2354 + protein coding gene proline rich 29
Tssr105530 11 106374799 to 106374807 8 + TSS region transcription start site region 105530
Tssr105531 11 106374820 to 106374832 12 + TSS region transcription start site region 105531
Tssr105532 11 106374835 to 106374850 15 + TSS region transcription start site region 105532
Tssr105533 11 106375300 to 106375316 16 + TSS region transcription start site region 105533
Icam2 11 106377656 to 106388075 10419 - protein coding gene intercellular adhesion molecule 2
Tssr111343 11 106382554 to 106382612 58 - TSS region transcription start site region 111343
Tssr105534 11 106387219 to 106387240 21 + TSS region transcription start site region 105534
Tssr111344 11 106387780 to 106387797 17 - TSS region transcription start site region 111344
Tssr111345 11 106388066 to 106388105 39 - TSS region transcription start site region 111345
Tssr111346 11 106388106 to 106388117 11 - TSS region transcription start site region 111346
Tssr111347 11 106395803 to 106395814 11 - TSS region transcription start site region 111347
Ern1 11 106397620 to 106487796 90176 - protein coding gene endoplasmic reticulum (ER) to nucleus signalling 1
Tssr111348 11 106411743 to 106411756 13 - TSS region transcription start site region 111348
Tssr105535 11 106416796 to 106416805 9 + TSS region transcription start site region 105535
Tssr105536 11 106416905 to 106416911 6 + TSS region transcription start site region 105536
Tssr111349 11 106486891 to 106486895 4 - TSS region transcription start site region 111349
Cpgi4023 11 106486922 to 106488366 1444 CpG island CpG island 4023
Tssr111350 11 106487758 to 106487765 7 - TSS region transcription start site region 111350
Tssr111351 11 106487797 to 106487821 24 - TSS region transcription start site region 111351
Tssr111352 11 106487833 to 106487880 47 - TSS region transcription start site region 111352
Tssr111353 11 106488310 to 106488329 19 - TSS region transcription start site region 111353
Tssr111354 11 106488418 to 106488435 17 - TSS region transcription start site region 111354
Cpgi4024 11 106500754 to 106501484 730 CpG island CpG island 4024
Gm36220 11 106500815 to 106501213 398 + lncRNA gene predicted gene, 36220
Tssr105537 11 106500908 to 106500925 17 + TSS region transcription start site region 105537
Snord104 11 106500993 to 106501062 69 + snoRNA gene small nucleolar RNA, C/D box 104
Gm22711 11 106501245 to 106501377 132 + snoRNA gene predicted gene, 22711
Tex2 11 106502147 to 106613423 111276 - protein coding gene testis expressed gene 2
Tssr111355 11 106503299 to 106503303 4 - TSS region transcription start site region 111355
Tssr111356 11 106507068 to 106507106 38 - TSS region transcription start site region 111356
Gm17925 11 106509184 to 106509794 610 + pseudogene predicted gene, 17925
Tssr111357 11 106514237 to 106514241 4 - TSS region transcription start site region 111357
Tssr105538 11 106516369 to 106516379 10 + TSS region transcription start site region 105538
Tssr111358 11 106530097 to 106530121 24 - TSS region transcription start site region 111358
Tssr105539 11 106530375 to 106530380 5 + TSS region transcription start site region 105539
Tssr105540 11 106549625 to 106549626 1 + TSS region transcription start site region 105540
Tssr111359 11 106568419 to 106568433 14 - TSS region transcription start site region 111359
Tssr111360 11 106572182 to 106572200 18 - TSS region transcription start site region 111360
Tssr111361 11 106579074 to 106579087 13 - TSS region transcription start site region 111361
Tssr111362 11 106579093 to 106579105 12 - TSS region transcription start site region 111362
Tssr111363 11 106579111 to 106579141 30 - TSS region transcription start site region 111363
Tssr111364 11 106580594 to 106580609 15 - TSS region transcription start site region 111364
Tssr105541 11 106580697 to 106580716 19 + TSS region transcription start site region 105541
Tssr111365 11 106587937 to 106587948 11 - TSS region transcription start site region 111365
Tssr111366 11 106588870 to 106588881 11 - TSS region transcription start site region 111366
Cpgi4025 11 106612053 to 106613346 1293 CpG island CpG island 4025
Tssr111367 11 106612928 to 106612973 45 - TSS region transcription start site region 111367
Tssr111368 11 106612991 to 106613007 16 - TSS region transcription start site region 111368
Tssr111369 11 106613013 to 106613024 11 - TSS region transcription start site region 111369
Tssr111370 11 106613032 to 106613052 20 - TSS region transcription start site region 111370
Tssr111371 11 106613053 to 106613064 11 - TSS region transcription start site region 111371
Tssr111372 11 106613370 to 106613384 14 - TSS region transcription start site region 111372
Tssr111373 11 106615628 to 106615660 32 - TSS region transcription start site region 111373
Pecam1 11 106654213 to 106750623 96410 - protein coding gene platelet/endothelial cell adhesion molecule 1
Tssr111374 11 106665445 to 106665449 4 - TSS region transcription start site region 111374
Tssr111375 11 106674649 to 106674671 22 - TSS region transcription start site region 111375
Tssr105542 11 106674962 to 106675000 38 + TSS region transcription start site region 105542
Tssr105543 11 106686066 to 106686068 2 + TSS region transcription start site region 105543
Tssr105544 11 106688658 to 106688665 7 + TSS region transcription start site region 105544
Tssr105545 11 106688666 to 106688676 10 + TSS region transcription start site region 105545
Tssr111376 11 106688972 to 106688976 4 - TSS region transcription start site region 111376
Cpgi4026 11 106699329 to 106699778 449 CpG island CpG island 4026
Tssr111377 11 106715059 to 106715073 14 - TSS region transcription start site region 111377
Tssr111378 11 106715076 to 106715099 23 - TSS region transcription start site region 111378
Tssr111379 11 106715203 to 106715214 11 - TSS region transcription start site region 111379
Tssr111380 11 106715236 to 106715247 11 - TSS region transcription start site region 111380
Tssr111381 11 106715251 to 106715293 42 - TSS region transcription start site region 111381
Tssr105546 11 106723223 to 106723239 16 + TSS region transcription start site region 105546
Tssr105547 11 106723253 to 106723268 15 + TSS region transcription start site region 105547
Tssr111382 11 106724421 to 106724434 13 - TSS region transcription start site region 111382
Tssr111383 11 106725264 to 106725270 6 - TSS region transcription start site region 111383
Tssr111384 11 106732544 to 106732557 13 - TSS region transcription start site region 111384
Tssr111385 11 106736411 to 106736441 30 - TSS region transcription start site region 111385
Tssr111386 11 106736448 to 106736466 18 - TSS region transcription start site region 111386
Tssr111387 11 106736475 to 106736486 11 - TSS region transcription start site region 111387
Tssr111388 11 106736499 to 106736506 7 - TSS region transcription start site region 111388
Tssr111389 11 106750185 to 106750202 17 - TSS region transcription start site region 111389
Tssr111390 11 106750273 to 106750346 73 - TSS region transcription start site region 111390
Tssr111391 11 106750472 to 106750486 14 - TSS region transcription start site region 111391
Tssr111392 11 106750649 to 106750660 11 - TSS region transcription start site region 111392
Tssr105548 11 106750675 to 106750690 15 + TSS region transcription start site region 105548
Tssr3706 11 106751104 to 106751120 16 - TSS region transcription start site region 3706
Milr1 11 106751226 to 106768794 17568 + protein coding gene mast cell immunoglobulin like receptor 1
Tssr105549 11 106751242 to 106751251 9 + TSS region transcription start site region 105549
Tssr105550 11 106751255 to 106751280 25 + TSS region transcription start site region 105550
Tssr105551 11 106751609 to 106751647 38 + TSS region transcription start site region 105551
Tssr111393 11 106752208 to 106752223 15 - TSS region transcription start site region 111393
Tssr111394 11 106752227 to 106752238 11 - TSS region transcription start site region 111394
Tssr105552 11 106752461 to 106752472 11 + TSS region transcription start site region 105552
Tssr105553 11 106755115 to 106755135 20 + TSS region transcription start site region 105553
Tssr105554 11 106755148 to 106755184 36 + TSS region transcription start site region 105554
Gm25889 11 106764635 to 106764741 106 - snRNA gene predicted gene, 25889
Polg2 11 106768253 to 106779537 11284 - protein coding gene polymerase (DNA directed), gamma 2, accessory subunit
Tssr111395 11 106775942 to 106775954 12 - TSS region transcription start site region 111395
Tssr111396 11 106778814 to 106778819 5 - TSS region transcription start site region 111396
Cpgi4027 11 106778936 to 106779741 805 CpG island CpG island 4027
Tssr111397 11 106779457 to 106779472 15 - TSS region transcription start site region 111397
Tssr111398 11 106779483 to 106779559 76 - TSS region transcription start site region 111398
Ddx5 11 106780355 to 106789180 8825 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
Tssr111399 11 106781884 to 106781899 15 - TSS region transcription start site region 111399
Tssr111400 11 106782112 to 106782117 5 - TSS region transcription start site region 111400
Mir3064 11 106782693 to 106782759 66 - miRNA gene microRNA 3064
Tssr111401 11 106782854 to 106782865 11 - TSS region transcription start site region 111401
Tssr111402 11 106782870 to 106782884 14 - TSS region transcription start site region 111402
Tssr111403 11 106782933 to 106782954 21 - TSS region transcription start site region 111403
Gm25994 11 106783171 to 106783271 100 - miRNA gene predicted gene, 25994
Tssr111404 11 106783343 to 106783362 19 - TSS region transcription start site region 111404
Tssr111405 11 106783949 to 106783969 20 - TSS region transcription start site region 111405
Tssr111406 11 106786718 to 106786767 49 - TSS region transcription start site region 111406
Cpgi4028 11 106787295 to 106789607 2312 CpG island CpG island 4028
Tssr111407 11 106787545 to 106787575 30 - TSS region transcription start site region 111407
Tssr105555 11 106787688 to 106787713 25 + TSS region transcription start site region 105555
Tssr111408 11 106788060 to 106788063 3 - TSS region transcription start site region 111408
Tssr111409 11 106788486 to 106788500 14 - TSS region transcription start site region 111409
Tssr105556 11 106788598 to 106788677 79 + TSS region transcription start site region 105556
Tssr111410 11 106788642 to 106788649 7 - TSS region transcription start site region 111410
Tssr105557 11 106788678 to 106788706 28 + TSS region transcription start site region 105557
Tssr105558 11 106788713 to 106788731 18 + TSS region transcription start site region 105558
Tssr111411 11 106788845 to 106788882 37 - TSS region transcription start site region 111411
Tssr111412 11 106788901 to 106788913 12 - TSS region transcription start site region 111412
Tssr111413 11 106788916 to 106788929 13 - TSS region transcription start site region 111413
Tssr3707 11 106788917 to 106788972 55 + TSS region transcription start site region 3707
Tssr111414 11 106789083 to 106789109 26 - TSS region transcription start site region 111414
Tssr111415 11 106789115 to 106789133 18 - TSS region transcription start site region 111415
Tssr111416 11 106789135 to 106789152 17 - TSS region transcription start site region 111416
Tssr111417 11 106789157 to 106789192 35 - TSS region transcription start site region 111417
Cep95 11 106789226 to 106818861 29635 + protein coding gene centrosomal protein 95
Tssr105559 11 106789235 to 106789335 100 + TSS region transcription start site region 105559
Tssr111418 11 106789436 to 106789454 18 - TSS region transcription start site region 111418
D11Mit290 11 106811877 to 106812051 174 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 290
Gm11706 11 106814670 to 106816008 1338 - antisense lncRNA gene predicted gene 11706
Smurf2 11 106820066 to 106920715 100649 - protein coding gene SMAD specific E3 ubiquitin protein ligase 2
Tssr111419 11 106877896 to 106877899 3 - TSS region transcription start site region 111419
Tssr111420 11 106897140 to 106897144 4 - TSS region transcription start site region 111420
Tssr111421 11 106900031 to 106900035 4 - TSS region transcription start site region 111421
Tssr111422 11 106913627 to 106913631 4 - TSS region transcription start site region 111422
Cpgi4029 11 106919646 to 106921188 1542 CpG island CpG island 4029
Tssr111423 11 106920608 to 106920643 35 - TSS region transcription start site region 111423
Gm27322 11 106920658 to 106920761 103 - miRNA gene predicted gene, 27322
Tssr111424 11 106920681 to 106920735 54 - TSS region transcription start site region 111424
D11Mit223 11 106927601 to 106927747 146 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 223
Tssr111425 11 106928030 to 106928051 21 - TSS region transcription start site region 111425
Gm11707 11 106972058 to 106973090 1032 - lincRNA gene predicted gene 11707
Gm8339 11 106972083 to 106973174 1091 + pseudogene predicted gene 8339
Tssr111426 11 106973097 to 106973117 20 - TSS region transcription start site region 111426
Tssr111427 11 106973126 to 106973138 12 - TSS region transcription start site region 111427
Ewc5 11 106978425 to 106978425 0 QTL ethanol withdrawal and consumption 5
Kpna2 11 106988629 to 106999525 10896 - protein coding gene karyopherin (importin) alpha 2
Tssr111428 11 106998441 to 106998446 5 - TSS region transcription start site region 111428
Tssr111429 11 106998449 to 106998463 14 - TSS region transcription start site region 111429
Tssr111430 11 106998465 to 106998482 17 - TSS region transcription start site region 111430
Tssr111431 11 106998483 to 106998491 8 - TSS region transcription start site region 111431
Cpgi4030 11 106998666 to 106999788 1122 CpG island CpG island 4030
Tssr111432 11 106999461 to 106999473 12 - TSS region transcription start site region 111432
Tssr111433 11 106999482 to 106999503 21 - TSS region transcription start site region 111433
Tssr105560 11 106999678 to 106999683 5 + TSS region transcription start site region 105560
Tssr105561 11 106999690 to 106999728 38 + TSS region transcription start site region 105561
Gm11708 11 107003912 to 107004740 828 - pseudogene predicted gene 11708
Gm39424 11 107010191 to 107013077 2886 + lncRNA gene predicted gene, 39424
Cpgi4031 11 107012603 to 107012969 366 CpG island CpG island 4031
Tssr111434 11 107012682 to 107012729 47 - TSS region transcription start site region 111434
n-TRccg1 11 107012866 to 107012938 72 + tRNA gene nuclear encoded tRNA arginine 1 (anticodon CCG)
Tssr105562 11 107012901 to 107012905 4 + TSS region transcription start site region 105562
Tssr111435 11 107015676 to 107015680 4 - TSS region transcription start site region 111435
Tssr105563 11 107022736 to 107022743 7 + TSS region transcription start site region 105563
Tssr105564 11 107025587 to 107025598 11 + TSS region transcription start site region 105564
Tssr105565 11 107025604 to 107025630 26 + TSS region transcription start site region 105565
1810010H24Rik 11 107025681 to 107030443 4762 + protein coding gene RIKEN cDNA 1810010H24 gene
Cpgi4032 11 107025689 to 107026307 618 CpG island CpG island 4032
Tssr105566 11 107025853 to 107025892 39 + TSS region transcription start site region 105566
Tssr105567 11 107026050 to 107026073 23 + TSS region transcription start site region 105567
Gm36273 11 107026883 to 107027739 856 - lncRNA gene predicted gene, 36273
Cpgi4033 11 107027621 to 107028713 1092 CpG island CpG island 4033
Cpgi4034 11 107029596 to 107029829 233 CpG island CpG island 4034
Bptf 11 107033081 to 107131922 98841 - protein coding gene bromodomain PHD finger transcription factor
Tssr111436 11 107080834 to 107080859 25 - TSS region transcription start site region 111436
Tssr111437 11 107081299 to 107081317 18 - TSS region transcription start site region 111437
Gm4098 11 107100789 to 107105384 4595 pseudogene predicted gene 4098
Cpgi4035 11 107131128 to 107132741 1613 CpG island CpG island 4035
Tssr111438 11 107131497 to 107131540 43 - TSS region transcription start site region 111438
Tssr111439 11 107131889 to 107131900 11 - TSS region transcription start site region 111439
Tssr111440 11 107131943 to 107131954 11 - TSS region transcription start site region 111440
Tssr111441 11 107132114 to 107132166 52 - TSS region transcription start site region 111441
Tssr111442 11 107132173 to 107132201 28 - TSS region transcription start site region 111442
Tssr111443 11 107132644 to 107132661 17 - TSS region transcription start site region 111443
Tssr111444 11 107137718 to 107137743 25 - TSS region transcription start site region 111444
Tssr105568 11 107137794 to 107137840 46 + TSS region transcription start site region 105568
Gm11715 11 107157408 to 107167125 9717 + antisense lncRNA gene predicted gene 11715
Nol11 11 107166663 to 107189381 22718 - protein coding gene nucleolar protein 11
Rps12-ps26 11 107171900 to 107172232 332 - pseudogene ribosomal protein S12, pseudogene 26
Gm18096 11 107182563 to 107183365 802 + pseudogene predicted gene, 18096
Cpgi4036 11 107188619 to 107189549 930 CpG island CpG island 4036
Tssr111445 11 107189255 to 107189307 52 - TSS region transcription start site region 111445