Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:106198106-106578117

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127 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc47 11 106199354 to 106216367 17013 - protein coding gene coiled-coil domain containing 47
Tssr111302 11 106199731 to 106199766 35 - TSS region transcription start site region 111302
Tssr111303 11 106210424 to 106210465 41 - TSS region transcription start site region 111303
Cpgi4018 11 106216010 to 106217523 1513 CpG island CpG island 4018
Tssr111304 11 106216310 to 106216317 7 - TSS region transcription start site region 111304
Tssr111305 11 106216318 to 106216363 45 - TSS region transcription start site region 111305
Tssr105500 11 106216428 to 106216477 49 + TSS region transcription start site region 105500
Tssr105501 11 106216518 to 106216532 14 + TSS region transcription start site region 105501
Ddx42 11 106216926 to 106249139 32213 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
Tssr105502 11 106216928 to 106216968 40 + TSS region transcription start site region 105502
Tssr105503 11 106216971 to 106216976 5 + TSS region transcription start site region 105503
Tssr105504 11 106216996 to 106217008 12 + TSS region transcription start site region 105504
Tssr105505 11 106217051 to 106217058 7 + TSS region transcription start site region 105505
Tssr105506 11 106230665 to 106230666 1 + TSS region transcription start site region 105506
Ftsj3 11 106249144 to 106255802 6658 - protein coding gene FtsJ RNA methyltransferase homolog 3 (E. coli)
Cpgi4019 11 106255235 to 106256380 1145 CpG island CpG island 4019
Tssr111306 11 106255780 to 106255837 57 - TSS region transcription start site region 111306
Tssr111307 11 106256045 to 106256103 58 - TSS region transcription start site region 111307
Tssr105507 11 106256124 to 106256135 11 + TSS region transcription start site region 105507
Tssr105508 11 106256140 to 106256172 32 + TSS region transcription start site region 105508
Tssr105509 11 106256173 to 106256189 16 + TSS region transcription start site region 105509
Psmc5 11 106256185 to 106263112 6927 + protein coding gene protease (prosome, macropain) 26S subunit, ATPase 5
D11Mit127 11 106259371 to 106259519 148 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 127
Gm23645 11 106260206 to 106260313 107 + snRNA gene predicted gene, 23645
Tssr105510 11 106262216 to 106262238 22 + TSS region transcription start site region 105510
Smarcd2 11 106263179 to 106272972 9793 - protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
Tssr111308 11 106267605 to 106267619 14 - TSS region transcription start site region 111308
Tssr111309 11 106267622 to 106267641 19 - TSS region transcription start site region 111309
Tssr111310 11 106272029 to 106272035 6 - TSS region transcription start site region 111310
Cpgi4020 11 106272146 to 106273706 1560 CpG island CpG island 4020
Tssr111311 11 106272706 to 106272814 108 - TSS region transcription start site region 111311
Tssr111312 11 106272830 to 106272860 30 - TSS region transcription start site region 111312
Tssr111313 11 106272927 to 106273006 79 - TSS region transcription start site region 111313
Cpgi4021 11 106276371 to 106276911 540 CpG island CpG island 4021
Tssr105511 11 106276651 to 106276688 37 + TSS region transcription start site region 105511
Tcam1 11 106276672 to 106288745 12073 + protein coding gene testicular cell adhesion molecule 1
Tssr105512 11 106276691 to 106276702 11 + TSS region transcription start site region 105512
Tssr105513 11 106276715 to 106276727 12 + TSS region transcription start site region 105513
Tssr105514 11 106300270 to 106300276 6 + TSS region transcription start site region 105514
Gh 11 106300271 to 106301865 1594 - protein coding gene growth hormone
Tssr111314 11 106300303 to 106300372 69 - TSS region transcription start site region 111314
Tssr105515 11 106300305 to 106300336 31 + TSS region transcription start site region 105515
Tssr105516 11 106300338 to 106300368 30 + TSS region transcription start site region 105516
Tssr111315 11 106300374 to 106300396 22 - TSS region transcription start site region 111315
Tssr105517 11 106300387 to 106300390 3 + TSS region transcription start site region 105517
Tssr111316 11 106300400 to 106300409 9 - TSS region transcription start site region 111316
Tssr105518 11 106300410 to 106300439 29 + TSS region transcription start site region 105518
Tssr111317 11 106300440 to 106300443 3 - TSS region transcription start site region 111317
Tssr105519 11 106300470 to 106300525 55 + TSS region transcription start site region 105519
Tssr111318 11 106300473 to 106300478 5 - TSS region transcription start site region 111318
Tssr111319 11 106300500 to 106300518 18 - TSS region transcription start site region 111319
Tssr111320 11 106300528 to 106300566 38 - TSS region transcription start site region 111320
Tssr105520 11 106300775 to 106300779 4 + TSS region transcription start site region 105520
Tssr105521 11 106300780 to 106300803 23 + TSS region transcription start site region 105521
Tssr111321 11 106300810 to 106300811 1 - TSS region transcription start site region 111321
Tssr111322 11 106300815 to 106300820 5 - TSS region transcription start site region 111322
Tssr111323 11 106300822 to 106300842 20 - TSS region transcription start site region 111323
Tssr111324 11 106300844 to 106300890 46 - TSS region transcription start site region 111324
Tssr105522 11 106300847 to 106300854 7 + TSS region transcription start site region 105522
Tssr111325 11 106300896 to 106300929 33 - TSS region transcription start site region 111325
Tssr105523 11 106301103 to 106301134 31 + TSS region transcription start site region 105523
Tssr111326 11 106301123 to 106301162 39 - TSS region transcription start site region 111326
Tssr3705 11 106301165 to 106301168 3 + TSS region transcription start site region 3705
Tssr105524 11 106301169 to 106301187 18 + TSS region transcription start site region 105524
Tssr111327 11 106301177 to 106301193 16 - TSS region transcription start site region 111327
Tssr111328 11 106301200 to 106301216 16 - TSS region transcription start site region 111328
Tssr105525 11 106301383 to 106301409 26 + TSS region transcription start site region 105525
Tssr111329 11 106301426 to 106301427 1 - TSS region transcription start site region 111329
Tssr111330 11 106301435 to 106301460 25 - TSS region transcription start site region 111330
Tssr111331 11 106301469 to 106301518 49 - TSS region transcription start site region 111331
Tssr105526 11 106301470 to 106301477 7 + TSS region transcription start site region 105526
Tssr111332 11 106301528 to 106301539 11 - TSS region transcription start site region 111332
Tssr111333 11 106301547 to 106301561 14 - TSS region transcription start site region 111333
Tssr111334 11 106301801 to 106301816 15 - TSS region transcription start site region 111334
Tssr105527 11 106306030 to 106306040 10 + TSS region transcription start site region 105527
Cd79b 11 106311341 to 106314562 3221 - protein coding gene CD79B antigen
Tssr111335 11 106313707 to 106313738 31 - TSS region transcription start site region 111335
Cpgi4022 11 106314353 to 106314517 164 CpG island CpG island 4022
Tssr111336 11 106314494 to 106314577 83 - TSS region transcription start site region 111336
Scn4a 11 106318592 to 106353288 34696 - protein coding gene sodium channel, voltage-gated, type IV, alpha
Tssr111337 11 106324904 to 106324916 12 - TSS region transcription start site region 111337
Tssr111338 11 106324934 to 106324962 28 - TSS region transcription start site region 111338
Tssr111339 11 106324963 to 106324985 22 - TSS region transcription start site region 111339
Tssr111340 11 106345096 to 106345108 12 - TSS region transcription start site region 111340
Tssr105528 11 106365495 to 106365499 4 + TSS region transcription start site region 105528
Tssr111341 11 106365523 to 106365528 5 - TSS region transcription start site region 111341
Tssr111342 11 106365529 to 106365567 38 - TSS region transcription start site region 111342
Tssr105529 11 106374734 to 106374747 13 + TSS region transcription start site region 105529
Prr29 11 106374760 to 106377114 2354 + protein coding gene proline rich 29
Tssr105530 11 106374799 to 106374807 8 + TSS region transcription start site region 105530
Tssr105531 11 106374820 to 106374832 12 + TSS region transcription start site region 105531
Tssr105532 11 106374835 to 106374850 15 + TSS region transcription start site region 105532
Tssr105533 11 106375300 to 106375316 16 + TSS region transcription start site region 105533
Icam2 11 106377656 to 106388075 10419 - protein coding gene intercellular adhesion molecule 2
Tssr111343 11 106382554 to 106382612 58 - TSS region transcription start site region 111343
Tssr105534 11 106387219 to 106387240 21 + TSS region transcription start site region 105534
Tssr111344 11 106387780 to 106387797 17 - TSS region transcription start site region 111344
Tssr111345 11 106388066 to 106388105 39 - TSS region transcription start site region 111345
Tssr111346 11 106388106 to 106388117 11 - TSS region transcription start site region 111346
Tssr111347 11 106395803 to 106395814 11 - TSS region transcription start site region 111347
Ern1 11 106397620 to 106487796 90176 - protein coding gene endoplasmic reticulum (ER) to nucleus signalling 1
Tssr111348 11 106411743 to 106411756 13 - TSS region transcription start site region 111348
Tssr105535 11 106416796 to 106416805 9 + TSS region transcription start site region 105535
Tssr105536 11 106416905 to 106416911 6 + TSS region transcription start site region 105536
Tssr111349 11 106486891 to 106486895 4 - TSS region transcription start site region 111349
Cpgi4023 11 106486922 to 106488366 1444 CpG island CpG island 4023
Tssr111350 11 106487758 to 106487765 7 - TSS region transcription start site region 111350
Tssr111351 11 106487797 to 106487821 24 - TSS region transcription start site region 111351
Tssr111352 11 106487833 to 106487880 47 - TSS region transcription start site region 111352
Tssr111353 11 106488310 to 106488329 19 - TSS region transcription start site region 111353
Tssr111354 11 106488418 to 106488435 17 - TSS region transcription start site region 111354
Cpgi4024 11 106500754 to 106501484 730 CpG island CpG island 4024
Gm36220 11 106500815 to 106501213 398 + lncRNA gene predicted gene, 36220
Tssr105537 11 106500908 to 106500925 17 + TSS region transcription start site region 105537
Snord104 11 106500993 to 106501062 69 + snoRNA gene small nucleolar RNA, C/D box 104
Gm22711 11 106501245 to 106501377 132 + snoRNA gene predicted gene, 22711
Tex2 11 106502147 to 106613423 111276 - protein coding gene testis expressed gene 2
Tssr111355 11 106503299 to 106503303 4 - TSS region transcription start site region 111355
Tssr111356 11 106507068 to 106507106 38 - TSS region transcription start site region 111356
Gm17925 11 106509184 to 106509794 610 + pseudogene predicted gene, 17925
Tssr111357 11 106514237 to 106514241 4 - TSS region transcription start site region 111357
Tssr105538 11 106516369 to 106516379 10 + TSS region transcription start site region 105538
Tssr111358 11 106530097 to 106530121 24 - TSS region transcription start site region 111358
Tssr105539 11 106530375 to 106530380 5 + TSS region transcription start site region 105539
Tssr105540 11 106549625 to 106549626 1 + TSS region transcription start site region 105540
Tssr111359 11 106568419 to 106568433 14 - TSS region transcription start site region 111359
Tssr111360 11 106572182 to 106572200 18 - TSS region transcription start site region 111360