Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:106160665-106300666

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Limd2 11 106156256 to 106160860 4604 - protein coding gene LIM domain containing 2
Cpgi4016 11 106158889 to 106161306 2417 CpG island CpG island 4016
Tssr111297 11 106160708 to 106160721 13 - TSS region transcription start site region 111297
Gm10840 11 106160850 to 106161158 308 + protein coding gene predicted gene 10840
Tssr111298 11 106161570 to 106161579 9 - TSS region transcription start site region 111298
Strada 11 106162974 to 106193605 30631 - protein coding gene STE20-related kinase adaptor alpha
Gm25556 11 106186444 to 106186587 143 - snRNA gene predicted gene, 25556
Cpgi4017 11 106193200 to 106194071 871 CpG island CpG island 4017
Tssr111299 11 106193489 to 106193501 12 - TSS region transcription start site region 111299
Tssr111300 11 106193511 to 106193584 73 - TSS region transcription start site region 111300
Tssr111301 11 106193597 to 106193608 11 - TSS region transcription start site region 111301
Ccdc47 11 106199354 to 106216367 17013 - protein coding gene coiled-coil domain containing 47
Tssr111302 11 106199731 to 106199766 35 - TSS region transcription start site region 111302
Tssr111303 11 106210424 to 106210465 41 - TSS region transcription start site region 111303
Cpgi4018 11 106216010 to 106217523 1513 CpG island CpG island 4018
Tssr111304 11 106216310 to 106216317 7 - TSS region transcription start site region 111304
Tssr111305 11 106216318 to 106216363 45 - TSS region transcription start site region 111305
Tssr105500 11 106216428 to 106216477 49 + TSS region transcription start site region 105500
Tssr105501 11 106216518 to 106216532 14 + TSS region transcription start site region 105501
Ddx42 11 106216926 to 106249139 32213 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
Tssr105502 11 106216928 to 106216968 40 + TSS region transcription start site region 105502
Tssr105503 11 106216971 to 106216976 5 + TSS region transcription start site region 105503
Tssr105504 11 106216996 to 106217008 12 + TSS region transcription start site region 105504
Tssr105505 11 106217051 to 106217058 7 + TSS region transcription start site region 105505
Tssr105506 11 106230665 to 106230666 1 + TSS region transcription start site region 105506
Ftsj3 11 106249144 to 106255802 6658 - protein coding gene FtsJ RNA methyltransferase homolog 3 (E. coli)
Cpgi4019 11 106255235 to 106256380 1145 CpG island CpG island 4019
Tssr111306 11 106255780 to 106255837 57 - TSS region transcription start site region 111306
Tssr111307 11 106256045 to 106256103 58 - TSS region transcription start site region 111307
Tssr105507 11 106256124 to 106256135 11 + TSS region transcription start site region 105507
Tssr105508 11 106256140 to 106256172 32 + TSS region transcription start site region 105508
Tssr105509 11 106256173 to 106256189 16 + TSS region transcription start site region 105509
Psmc5 11 106256185 to 106263112 6927 + protein coding gene protease (prosome, macropain) 26S subunit, ATPase 5
D11Mit127 11 106259371 to 106259519 148 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 127
Gm23645 11 106260206 to 106260313 107 + snRNA gene predicted gene, 23645
Tssr105510 11 106262216 to 106262238 22 + TSS region transcription start site region 105510
Smarcd2 11 106263179 to 106272972 9793 - protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
Tssr111308 11 106267605 to 106267619 14 - TSS region transcription start site region 111308
Tssr111309 11 106267622 to 106267641 19 - TSS region transcription start site region 111309
Tssr111310 11 106272029 to 106272035 6 - TSS region transcription start site region 111310
Cpgi4020 11 106272146 to 106273706 1560 CpG island CpG island 4020
Tssr111311 11 106272706 to 106272814 108 - TSS region transcription start site region 111311
Tssr111312 11 106272830 to 106272860 30 - TSS region transcription start site region 111312
Tssr111313 11 106272927 to 106273006 79 - TSS region transcription start site region 111313
Cpgi4021 11 106276371 to 106276911 540 CpG island CpG island 4021
Tssr105511 11 106276651 to 106276688 37 + TSS region transcription start site region 105511
Tcam1 11 106276672 to 106288745 12073 + protein coding gene testicular cell adhesion molecule 1
Tssr105512 11 106276691 to 106276702 11 + TSS region transcription start site region 105512
Tssr105513 11 106276715 to 106276727 12 + TSS region transcription start site region 105513
Tssr105514 11 106300270 to 106300276 6 + TSS region transcription start site region 105514
Gh 11 106300271 to 106301865 1594 - protein coding gene growth hormone
Tssr111314 11 106300303 to 106300372 69 - TSS region transcription start site region 111314
Tssr105515 11 106300305 to 106300336 31 + TSS region transcription start site region 105515
Tssr105516 11 106300338 to 106300368 30 + TSS region transcription start site region 105516
Tssr111315 11 106300374 to 106300396 22 - TSS region transcription start site region 111315
Tssr105517 11 106300387 to 106300390 3 + TSS region transcription start site region 105517
Tssr111316 11 106300400 to 106300409 9 - TSS region transcription start site region 111316
Tssr105518 11 106300410 to 106300439 29 + TSS region transcription start site region 105518
Tssr111317 11 106300440 to 106300443 3 - TSS region transcription start site region 111317
Tssr105519 11 106300470 to 106300525 55 + TSS region transcription start site region 105519
Tssr111318 11 106300473 to 106300478 5 - TSS region transcription start site region 111318
Tssr111319 11 106300500 to 106300518 18 - TSS region transcription start site region 111319
Tssr111320 11 106300528 to 106300566 38 - TSS region transcription start site region 111320