Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:106090665-106370666

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127 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Map3k3 11 106084613 to 106155446 70833 + protein coding gene mitogen-activated protein kinase kinase kinase 3
Tssr105488 11 106090973 to 106091006 33 + TSS region transcription start site region 105488
Tssr105489 11 106096998 to 106097004 6 + TSS region transcription start site region 105489
Tssr111285 11 106098244 to 106098251 7 - TSS region transcription start site region 111285
Tssr105490 11 106113737 to 106113743 6 + TSS region transcription start site region 105490
Gm11672 11 106126336 to 106127351 1015 - antisense lncRNA gene predicted gene 11672
B930069K15Rik 11 106134817 to 106138328 3511 unclassified gene RIKEN cDNA B930069K15 gene
D11Mit147 11 106140852 to 106140945 93 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 147
Tssr105491 11 106142435 to 106142452 17 + TSS region transcription start site region 105491
Tssr105492 11 106156212 to 106156219 7 + TSS region transcription start site region 105492
Limd2 11 106156256 to 106160860 4604 - protein coding gene LIM domain containing 2
Cpgi4016 11 106158889 to 106161306 2417 CpG island CpG island 4016
Tssr111286 11 106159200 to 106159227 27 - TSS region transcription start site region 111286
Tssr111287 11 106159400 to 106159451 51 - TSS region transcription start site region 111287
Tssr111288 11 106159460 to 106159467 7 - TSS region transcription start site region 111288
Tssr105493 11 106159653 to 106159678 25 + TSS region transcription start site region 105493
Tssr111289 11 106159776 to 106159788 12 - TSS region transcription start site region 111289
Tssr3704 11 106159879 to 106159890 11 - TSS region transcription start site region 3704
Tssr111290 11 106159902 to 106159913 11 - TSS region transcription start site region 111290
Tssr111291 11 106159942 to 106159956 14 - TSS region transcription start site region 111291
Tssr105494 11 106159972 to 106159981 9 + TSS region transcription start site region 105494
Tssr111292 11 106160101 to 106160168 67 - TSS region transcription start site region 111292
Tssr105495 11 106160123 to 106160145 22 + TSS region transcription start site region 105495
Tssr105496 11 106160214 to 106160225 11 + TSS region transcription start site region 105496
Tssr105497 11 106160235 to 106160250 15 + TSS region transcription start site region 105497
Tssr105498 11 106160261 to 106160285 24 + TSS region transcription start site region 105498
Tssr105499 11 106160293 to 106160319 26 + TSS region transcription start site region 105499
Tssr111293 11 106160440 to 106160483 43 - TSS region transcription start site region 111293
Tssr111294 11 106160487 to 106160499 12 - TSS region transcription start site region 111294
Tssr111295 11 106160504 to 106160545 41 - TSS region transcription start site region 111295
Tssr111296 11 106160632 to 106160647 15 - TSS region transcription start site region 111296
Tssr111297 11 106160708 to 106160721 13 - TSS region transcription start site region 111297
Gm10840 11 106160850 to 106161158 308 + protein coding gene predicted gene 10840
Tssr111298 11 106161570 to 106161579 9 - TSS region transcription start site region 111298
Strada 11 106162974 to 106193605 30631 - protein coding gene STE20-related kinase adaptor alpha
Gm25556 11 106186444 to 106186587 143 - snRNA gene predicted gene, 25556
Cpgi4017 11 106193200 to 106194071 871 CpG island CpG island 4017
Tssr111299 11 106193489 to 106193501 12 - TSS region transcription start site region 111299
Tssr111300 11 106193511 to 106193584 73 - TSS region transcription start site region 111300
Tssr111301 11 106193597 to 106193608 11 - TSS region transcription start site region 111301
Ccdc47 11 106199354 to 106216367 17013 - protein coding gene coiled-coil domain containing 47
Tssr111302 11 106199731 to 106199766 35 - TSS region transcription start site region 111302
Tssr111303 11 106210424 to 106210465 41 - TSS region transcription start site region 111303
Cpgi4018 11 106216010 to 106217523 1513 CpG island CpG island 4018
Tssr111304 11 106216310 to 106216317 7 - TSS region transcription start site region 111304
Tssr111305 11 106216318 to 106216363 45 - TSS region transcription start site region 111305
Tssr105500 11 106216428 to 106216477 49 + TSS region transcription start site region 105500
Tssr105501 11 106216518 to 106216532 14 + TSS region transcription start site region 105501
Ddx42 11 106216926 to 106249139 32213 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
Tssr105502 11 106216928 to 106216968 40 + TSS region transcription start site region 105502
Tssr105503 11 106216971 to 106216976 5 + TSS region transcription start site region 105503
Tssr105504 11 106216996 to 106217008 12 + TSS region transcription start site region 105504
Tssr105505 11 106217051 to 106217058 7 + TSS region transcription start site region 105505
Tssr105506 11 106230665 to 106230666 1 + TSS region transcription start site region 105506
Ftsj3 11 106249144 to 106255802 6658 - protein coding gene FtsJ RNA methyltransferase homolog 3 (E. coli)
Cpgi4019 11 106255235 to 106256380 1145 CpG island CpG island 4019
Tssr111306 11 106255780 to 106255837 57 - TSS region transcription start site region 111306
Tssr111307 11 106256045 to 106256103 58 - TSS region transcription start site region 111307
Tssr105507 11 106256124 to 106256135 11 + TSS region transcription start site region 105507
Tssr105508 11 106256140 to 106256172 32 + TSS region transcription start site region 105508
Tssr105509 11 106256173 to 106256189 16 + TSS region transcription start site region 105509
Psmc5 11 106256185 to 106263112 6927 + protein coding gene protease (prosome, macropain) 26S subunit, ATPase 5
D11Mit127 11 106259371 to 106259519 148 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 127
Gm23645 11 106260206 to 106260313 107 + snRNA gene predicted gene, 23645
Tssr105510 11 106262216 to 106262238 22 + TSS region transcription start site region 105510
Smarcd2 11 106263179 to 106272972 9793 - protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
Tssr111308 11 106267605 to 106267619 14 - TSS region transcription start site region 111308
Tssr111309 11 106267622 to 106267641 19 - TSS region transcription start site region 111309
Tssr111310 11 106272029 to 106272035 6 - TSS region transcription start site region 111310
Cpgi4020 11 106272146 to 106273706 1560 CpG island CpG island 4020
Tssr111311 11 106272706 to 106272814 108 - TSS region transcription start site region 111311
Tssr111312 11 106272830 to 106272860 30 - TSS region transcription start site region 111312
Tssr111313 11 106272927 to 106273006 79 - TSS region transcription start site region 111313
Cpgi4021 11 106276371 to 106276911 540 CpG island CpG island 4021
Tssr105511 11 106276651 to 106276688 37 + TSS region transcription start site region 105511
Tcam1 11 106276672 to 106288745 12073 + protein coding gene testicular cell adhesion molecule 1
Tssr105512 11 106276691 to 106276702 11 + TSS region transcription start site region 105512
Tssr105513 11 106276715 to 106276727 12 + TSS region transcription start site region 105513
Tssr105514 11 106300270 to 106300276 6 + TSS region transcription start site region 105514
Gh 11 106300271 to 106301865 1594 - protein coding gene growth hormone
Tssr111314 11 106300303 to 106300372 69 - TSS region transcription start site region 111314
Tssr105515 11 106300305 to 106300336 31 + TSS region transcription start site region 105515
Tssr105516 11 106300338 to 106300368 30 + TSS region transcription start site region 105516
Tssr111315 11 106300374 to 106300396 22 - TSS region transcription start site region 111315
Tssr105517 11 106300387 to 106300390 3 + TSS region transcription start site region 105517
Tssr111316 11 106300400 to 106300409 9 - TSS region transcription start site region 111316
Tssr105518 11 106300410 to 106300439 29 + TSS region transcription start site region 105518
Tssr111317 11 106300440 to 106300443 3 - TSS region transcription start site region 111317
Tssr105519 11 106300470 to 106300525 55 + TSS region transcription start site region 105519
Tssr111318 11 106300473 to 106300478 5 - TSS region transcription start site region 111318
Tssr111319 11 106300500 to 106300518 18 - TSS region transcription start site region 111319
Tssr111320 11 106300528 to 106300566 38 - TSS region transcription start site region 111320
Tssr105520 11 106300775 to 106300779 4 + TSS region transcription start site region 105520
Tssr105521 11 106300780 to 106300803 23 + TSS region transcription start site region 105521
Tssr111321 11 106300810 to 106300811 1 - TSS region transcription start site region 111321
Tssr111322 11 106300815 to 106300820 5 - TSS region transcription start site region 111322
Tssr111323 11 106300822 to 106300842 20 - TSS region transcription start site region 111323
Tssr111324 11 106300844 to 106300890 46 - TSS region transcription start site region 111324
Tssr105522 11 106300847 to 106300854 7 + TSS region transcription start site region 105522
Tssr111325 11 106300896 to 106300929 33 - TSS region transcription start site region 111325
Tssr105523 11 106301103 to 106301134 31 + TSS region transcription start site region 105523
Tssr111326 11 106301123 to 106301162 39 - TSS region transcription start site region 111326
Tssr3705 11 106301165 to 106301168 3 + TSS region transcription start site region 3705
Tssr105524 11 106301169 to 106301187 18 + TSS region transcription start site region 105524
Tssr111327 11 106301177 to 106301193 16 - TSS region transcription start site region 111327
Tssr111328 11 106301200 to 106301216 16 - TSS region transcription start site region 111328
Tssr105525 11 106301383 to 106301409 26 + TSS region transcription start site region 105525
Tssr111329 11 106301426 to 106301427 1 - TSS region transcription start site region 111329
Tssr111330 11 106301435 to 106301460 25 - TSS region transcription start site region 111330
Tssr111331 11 106301469 to 106301518 49 - TSS region transcription start site region 111331
Tssr105526 11 106301470 to 106301477 7 + TSS region transcription start site region 105526
Tssr111332 11 106301528 to 106301539 11 - TSS region transcription start site region 111332
Tssr111333 11 106301547 to 106301561 14 - TSS region transcription start site region 111333
Tssr111334 11 106301801 to 106301816 15 - TSS region transcription start site region 111334
Tssr105527 11 106306030 to 106306040 10 + TSS region transcription start site region 105527
Cd79b 11 106311341 to 106314562 3221 - protein coding gene CD79B antigen
Tssr111335 11 106313707 to 106313738 31 - TSS region transcription start site region 111335
Cpgi4022 11 106314353 to 106314517 164 CpG island CpG island 4022
Tssr111336 11 106314494 to 106314577 83 - TSS region transcription start site region 111336
Scn4a 11 106318592 to 106353288 34696 - protein coding gene sodium channel, voltage-gated, type IV, alpha
Tssr111337 11 106324904 to 106324916 12 - TSS region transcription start site region 111337
Tssr111338 11 106324934 to 106324962 28 - TSS region transcription start site region 111338
Tssr111339 11 106324963 to 106324985 22 - TSS region transcription start site region 111339
Tssr111340 11 106345096 to 106345108 12 - TSS region transcription start site region 111340
Tssr105528 11 106365495 to 106365499 4 + TSS region transcription start site region 105528
Tssr111341 11 106365523 to 106365528 5 - TSS region transcription start site region 111341
Tssr111342 11 106365529 to 106365567 38 - TSS region transcription start site region 111342