Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:105446998-106747004

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318 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
March10 11 105360798 to 105456735 95937 - protein coding gene membrane-associated ring finger (C3HC4) 10
Gm39417 11 105449701 to 105474551 24850 + lncRNA gene predicted gene, 39417
Tssr105440 11 105452965 to 105452983 18 + TSS region transcription start site region 105440
Tssr111262 11 105455277 to 105455288 11 - TSS region transcription start site region 111262
Tssr111263 11 105455299 to 105455325 26 - TSS region transcription start site region 111263
Cpgi4003 11 105456448 to 105456982 534 CpG island CpG island 4003
Tssr111264 11 105456674 to 105456751 77 - TSS region transcription start site region 111264
Tssr3699 11 105456759 to 105456764 5 - TSS region transcription start site region 3699
Gm35828 11 105504266 to 105517449 13183 + lncRNA gene predicted gene, 35828
Gm39419 11 105517480 to 105519850 2370 + lncRNA gene predicted gene, 39419
Gm39422 11 105552757 to 105577590 24833 + lncRNA gene predicted gene, 39422
Cpgi4004 11 105589234 to 105590679 1445 CpG island CpG island 4004
Tssr105441 11 105589442 to 105589476 34 + TSS region transcription start site region 105441
Tssr105442 11 105589733 to 105589748 15 + TSS region transcription start site region 105442
Tssr105443 11 105589758 to 105589808 50 + TSS region transcription start site region 105443
Tssr105444 11 105589828 to 105589835 7 + TSS region transcription start site region 105444
Tssr3700 11 105589962 to 105589966 4 + TSS region transcription start site region 3700
Tssr105445 11 105589970 to 105590028 58 + TSS region transcription start site region 105445
Tanc2 11 105589986 to 105929304 339318 + protein coding gene tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
Tssr105446 11 105590054 to 105590090 36 + TSS region transcription start site region 105446
Gm23990 11 105597625 to 105597741 116 + miRNA gene predicted gene, 23990
Tssr105447 11 105634540 to 105634546 6 + TSS region transcription start site region 105447
Tssr105448 11 105655534 to 105655544 10 + TSS region transcription start site region 105448
Tssr105449 11 105655548 to 105655579 31 + TSS region transcription start site region 105449
Tssr105450 11 105655583 to 105655617 34 + TSS region transcription start site region 105450
Tssr105451 11 105731728 to 105731753 25 + TSS region transcription start site region 105451
Tssr105452 11 105731758 to 105731781 23 + TSS region transcription start site region 105452
Tssr105453 11 105731815 to 105731827 12 + TSS region transcription start site region 105453
Gm11652 11 105773518 to 105774784 1266 + pseudogene predicted gene 11652
Tssr105454 11 105784812 to 105784825 13 + TSS region transcription start site region 105454
Gm11653 11 105875905 to 105876913 1008 + pseudogene predicted gene 11653
Tssr105455 11 105901896 to 105901910 14 + TSS region transcription start site region 105455
Tssr105456 11 105901972 to 105901984 12 + TSS region transcription start site region 105456
Tssr105457 11 105913980 to 105914009 29 + TSS region transcription start site region 105457
Tssr105458 11 105922946 to 105922958 12 + TSS region transcription start site region 105458
Cyb561 11 105933702 to 105945118 11416 - protein coding gene cytochrome b-561
Tssr111265 11 105936294 to 105936301 7 - TSS region transcription start site region 111265
Tssr111266 11 105936303 to 105936316 13 - TSS region transcription start site region 111266
Tssr111267 11 105936327 to 105936342 15 - TSS region transcription start site region 111267
Tssr111268 11 105936482 to 105936490 8 - TSS region transcription start site region 111268
Tssr111269 11 105936510 to 105936524 14 - TSS region transcription start site region 111269
Gm46296 11 105936828 to 105939793 2965 + lncRNA gene predicted gene, 46296
Tssr111270 11 105936904 to 105936914 10 - TSS region transcription start site region 111270
Tssr111271 11 105936915 to 105936933 18 - TSS region transcription start site region 111271
Tssr111272 11 105937844 to 105937871 27 - TSS region transcription start site region 111272
Tssr111273 11 105938560 to 105938567 7 - TSS region transcription start site region 111273
Tssr111274 11 105938968 to 105938983 15 - TSS region transcription start site region 111274
Tssr111275 11 105939954 to 105939961 7 - TSS region transcription start site region 111275
Tssr111276 11 105939987 to 105939997 10 - TSS region transcription start site region 111276
Tssr111277 11 105940207 to 105940236 29 - TSS region transcription start site region 111277
Tssr105459 11 105943347 to 105943358 11 + TSS region transcription start site region 105459
Cpgi4005 11 105943574 to 105944855 1281 CpG island CpG island 4005
Gm9910 11 105943704 to 105945253 1549 + protein coding gene predicted gene 9910
Tssr111278 11 105944128 to 105944223 95 - TSS region transcription start site region 111278
Tssr111279 11 105944478 to 105944518 40 - TSS region transcription start site region 111279
Tssr111280 11 105955846 to 105955855 9 - TSS region transcription start site region 111280
Cpgi4006 11 105955882 to 105956199 317 CpG island CpG island 4006
Tssr105460 11 105956005 to 105956020 15 + TSS region transcription start site region 105460
Cpgi4007 11 105959507 to 105959727 220 CpG island CpG island 4007
Gm11651 11 105965608 to 105985694 20086 - antisense lncRNA gene predicted gene 11651
Cpgi4008 11 105967470 to 105968609 1139 CpG island CpG island 4008
Tssr105461 11 105967642 to 105967662 20 + TSS region transcription start site region 105461
Tssr105462 11 105967914 to 105967927 13 + TSS region transcription start site region 105462
Tssr105463 11 105967938 to 105967956 18 + TSS region transcription start site region 105463
Ace 11 105967945 to 105989964 22019 + protein coding gene angiotensin I converting enzyme (peptidyl-dipeptidase A) 1
Tssr105464 11 105968515 to 105968523 8 + TSS region transcription start site region 105464
Tssr105465 11 105969685 to 105969704 19 + TSS region transcription start site region 105465
Tssr105466 11 105974639 to 105974658 19 + TSS region transcription start site region 105466
Tssr105467 11 105974662 to 105974681 19 + TSS region transcription start site region 105467
Tssr111281 11 105975079 to 105975091 12 - TSS region transcription start site region 111281
Tssr105468 11 105975181 to 105975195 14 + TSS region transcription start site region 105468
Tssr105469 11 105975204 to 105975215 11 + TSS region transcription start site region 105469
Tssr3701 11 105975220 to 105975227 7 + TSS region transcription start site region 3701
D11Mit13 11 105975635 to 105975795 160 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 13
Tssr105470 11 105985737 to 105985751 14 + TSS region transcription start site region 105470
Tssr105471 11 105985754 to 105985778 24 + TSS region transcription start site region 105471
Tssr3702 11 105985788 to 105985792 4 + TSS region transcription start site region 3702
Cpgi4009 11 105988634 to 105989020 386 CpG island CpG island 4009
Tssr105472 11 105989247 to 105989256 9 + TSS region transcription start site region 105472
Tssr105473 11 105994617 to 105994624 7 + TSS region transcription start site region 105473
Tssr105474 11 105994635 to 105994678 43 + TSS region transcription start site region 105474
Ace3 11 105994675 to 106005443 10768 + protein coding gene angiotensin I converting enzyme (peptidyl-dipeptidase A) 3
Gm35971 11 105995584 to 106020559 24975 - lncRNA gene predicted gene, 35971
Cpgi4010 11 106007917 to 106008227 310 CpG island CpG island 4010
Kcnh6 11 106008124 to 106034549 26425 + protein coding gene potassium voltage-gated channel, subfamily H (eag-related), member 6
Tssr105475 11 106008142 to 106008162 20 + TSS region transcription start site region 105475
Cpgi4011 11 106018579 to 106019012 433 CpG island CpG island 4011
Cpgi4012 11 106020065 to 106020841 776 CpG island CpG island 4012
Tssr105476 11 106020115 to 106020167 52 + TSS region transcription start site region 105476
Tssr105477 11 106033584 to 106033602 18 + TSS region transcription start site region 105477
D11Mit201 11 106033620 to 106033812 192 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 201
Cpgi4013 11 106036566 to 106037655 1089 CpG island CpG island 4013
Tssr105478 11 106036857 to 106036866 9 + TSS region transcription start site region 105478
Tssr105479 11 106036867 to 106036924 57 + TSS region transcription start site region 105479
Dcaf7 11 106036872 to 106059324 22452 + protein coding gene DDB1 and CUL4 associated factor 7
Tssr105480 11 106036928 to 106036945 17 + TSS region transcription start site region 105480
Tssr105481 11 106036960 to 106036972 12 + TSS region transcription start site region 105481
D11Mit251 11 106051025 to 106051134 109 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 251
Gm11646 11 106051151 to 106051852 701 - antisense lncRNA gene predicted gene 11646
Tssr105482 11 106054884 to 106054918 34 + TSS region transcription start site region 105482
Taco1os 11 106065077 to 106066305 1228 - antisense lncRNA gene translational activator of mitochondrially encoded cytochrome c oxidase I, opposite strand
Cpgi4014 11 106065869 to 106066892 1023 CpG island CpG island 4014
Tssr111282 11 106065900 to 106065921 21 - TSS region transcription start site region 111282
Tssr111283 11 106065922 to 106065954 32 - TSS region transcription start site region 111283
Tssr105483 11 106066041 to 106066054 13 + TSS region transcription start site region 105483
Tssr105484 11 106066055 to 106066100 45 + TSS region transcription start site region 105484
Taco1 11 106066061 to 106073612 7551 + protein coding gene translational activator of mitochondrially encoded cytochrome c oxidase I
Tssr3703 11 106066766 to 106066787 21 + TSS region transcription start site region 3703
Cpgi4015 11 106083776 to 106085605 1829 CpG island CpG island 4015
Tssr111284 11 106084144 to 106084157 13 - TSS region transcription start site region 111284
Tssr105485 11 106084545 to 106084559 14 + TSS region transcription start site region 105485
Tssr105486 11 106084577 to 106084623 46 + TSS region transcription start site region 105486
Map3k3 11 106084613 to 106155446 70833 + protein coding gene mitogen-activated protein kinase kinase kinase 3
Tssr105487 11 106085363 to 106085366 3 + TSS region transcription start site region 105487
Tssr105488 11 106090973 to 106091006 33 + TSS region transcription start site region 105488
Tssr105489 11 106096998 to 106097004 6 + TSS region transcription start site region 105489
Tssr111285 11 106098244 to 106098251 7 - TSS region transcription start site region 111285
Tssr105490 11 106113737 to 106113743 6 + TSS region transcription start site region 105490
Gm11672 11 106126336 to 106127351 1015 - antisense lncRNA gene predicted gene 11672
B930069K15Rik 11 106134817 to 106138328 3511 unclassified gene RIKEN cDNA B930069K15 gene
D11Mit147 11 106140852 to 106140945 93 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 147
Tssr105491 11 106142435 to 106142452 17 + TSS region transcription start site region 105491
Tssr105492 11 106156212 to 106156219 7 + TSS region transcription start site region 105492
Limd2 11 106156256 to 106160860 4604 - protein coding gene LIM domain containing 2
Cpgi4016 11 106158889 to 106161306 2417 CpG island CpG island 4016
Tssr111286 11 106159200 to 106159227 27 - TSS region transcription start site region 111286
Tssr111287 11 106159400 to 106159451 51 - TSS region transcription start site region 111287
Tssr111288 11 106159460 to 106159467 7 - TSS region transcription start site region 111288
Tssr105493 11 106159653 to 106159678 25 + TSS region transcription start site region 105493
Tssr111289 11 106159776 to 106159788 12 - TSS region transcription start site region 111289
Tssr3704 11 106159879 to 106159890 11 - TSS region transcription start site region 3704
Tssr111290 11 106159902 to 106159913 11 - TSS region transcription start site region 111290
Tssr111291 11 106159942 to 106159956 14 - TSS region transcription start site region 111291
Tssr105494 11 106159972 to 106159981 9 + TSS region transcription start site region 105494
Tssr111292 11 106160101 to 106160168 67 - TSS region transcription start site region 111292
Tssr105495 11 106160123 to 106160145 22 + TSS region transcription start site region 105495
Tssr105496 11 106160214 to 106160225 11 + TSS region transcription start site region 105496
Tssr105497 11 106160235 to 106160250 15 + TSS region transcription start site region 105497
Tssr105498 11 106160261 to 106160285 24 + TSS region transcription start site region 105498
Tssr105499 11 106160293 to 106160319 26 + TSS region transcription start site region 105499
Tssr111293 11 106160440 to 106160483 43 - TSS region transcription start site region 111293
Tssr111294 11 106160487 to 106160499 12 - TSS region transcription start site region 111294
Tssr111295 11 106160504 to 106160545 41 - TSS region transcription start site region 111295
Tssr111296 11 106160632 to 106160647 15 - TSS region transcription start site region 111296
Tssr111297 11 106160708 to 106160721 13 - TSS region transcription start site region 111297
Gm10840 11 106160850 to 106161158 308 + protein coding gene predicted gene 10840
Tssr111298 11 106161570 to 106161579 9 - TSS region transcription start site region 111298
Strada 11 106162974 to 106193605 30631 - protein coding gene STE20-related kinase adaptor alpha
Gm25556 11 106186444 to 106186587 143 - snRNA gene predicted gene, 25556
Cpgi4017 11 106193200 to 106194071 871 CpG island CpG island 4017
Tssr111299 11 106193489 to 106193501 12 - TSS region transcription start site region 111299
Tssr111300 11 106193511 to 106193584 73 - TSS region transcription start site region 111300
Tssr111301 11 106193597 to 106193608 11 - TSS region transcription start site region 111301
Ccdc47 11 106199354 to 106216367 17013 - protein coding gene coiled-coil domain containing 47
Tssr111302 11 106199731 to 106199766 35 - TSS region transcription start site region 111302
Tssr111303 11 106210424 to 106210465 41 - TSS region transcription start site region 111303
Cpgi4018 11 106216010 to 106217523 1513 CpG island CpG island 4018
Tssr111304 11 106216310 to 106216317 7 - TSS region transcription start site region 111304
Tssr111305 11 106216318 to 106216363 45 - TSS region transcription start site region 111305
Tssr105500 11 106216428 to 106216477 49 + TSS region transcription start site region 105500
Tssr105501 11 106216518 to 106216532 14 + TSS region transcription start site region 105501
Ddx42 11 106216926 to 106249139 32213 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
Tssr105502 11 106216928 to 106216968 40 + TSS region transcription start site region 105502
Tssr105503 11 106216971 to 106216976 5 + TSS region transcription start site region 105503
Tssr105504 11 106216996 to 106217008 12 + TSS region transcription start site region 105504
Tssr105505 11 106217051 to 106217058 7 + TSS region transcription start site region 105505
Tssr105506 11 106230665 to 106230666 1 + TSS region transcription start site region 105506
Ftsj3 11 106249144 to 106255802 6658 - protein coding gene FtsJ RNA methyltransferase homolog 3 (E. coli)
Cpgi4019 11 106255235 to 106256380 1145 CpG island CpG island 4019
Tssr111306 11 106255780 to 106255837 57 - TSS region transcription start site region 111306
Tssr111307 11 106256045 to 106256103 58 - TSS region transcription start site region 111307
Tssr105507 11 106256124 to 106256135 11 + TSS region transcription start site region 105507
Tssr105508 11 106256140 to 106256172 32 + TSS region transcription start site region 105508
Tssr105509 11 106256173 to 106256189 16 + TSS region transcription start site region 105509
Psmc5 11 106256185 to 106263112 6927 + protein coding gene protease (prosome, macropain) 26S subunit, ATPase 5
D11Mit127 11 106259371 to 106259519 148 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 127
Gm23645 11 106260206 to 106260313 107 + snRNA gene predicted gene, 23645
Tssr105510 11 106262216 to 106262238 22 + TSS region transcription start site region 105510
Smarcd2 11 106263179 to 106272972 9793 - protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
Tssr111308 11 106267605 to 106267619 14 - TSS region transcription start site region 111308
Tssr111309 11 106267622 to 106267641 19 - TSS region transcription start site region 111309
Tssr111310 11 106272029 to 106272035 6 - TSS region transcription start site region 111310
Cpgi4020 11 106272146 to 106273706 1560 CpG island CpG island 4020
Tssr111311 11 106272706 to 106272814 108 - TSS region transcription start site region 111311
Tssr111312 11 106272830 to 106272860 30 - TSS region transcription start site region 111312
Tssr111313 11 106272927 to 106273006 79 - TSS region transcription start site region 111313
Cpgi4021 11 106276371 to 106276911 540 CpG island CpG island 4021
Tssr105511 11 106276651 to 106276688 37 + TSS region transcription start site region 105511
Tcam1 11 106276672 to 106288745 12073 + protein coding gene testicular cell adhesion molecule 1
Tssr105512 11 106276691 to 106276702 11 + TSS region transcription start site region 105512
Tssr105513 11 106276715 to 106276727 12 + TSS region transcription start site region 105513
Tssr105514 11 106300270 to 106300276 6 + TSS region transcription start site region 105514
Gh 11 106300271 to 106301865 1594 - protein coding gene growth hormone
Tssr111314 11 106300303 to 106300372 69 - TSS region transcription start site region 111314
Tssr105515 11 106300305 to 106300336 31 + TSS region transcription start site region 105515
Tssr105516 11 106300338 to 106300368 30 + TSS region transcription start site region 105516
Tssr111315 11 106300374 to 106300396 22 - TSS region transcription start site region 111315
Tssr105517 11 106300387 to 106300390 3 + TSS region transcription start site region 105517
Tssr111316 11 106300400 to 106300409 9 - TSS region transcription start site region 111316
Tssr105518 11 106300410 to 106300439 29 + TSS region transcription start site region 105518