Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:105431728-106031753

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
March10 11 105360798 to 105456735 95937 - protein coding gene membrane-associated ring finger (C3HC4) 10
Gm11640 11 105434445 to 105435412 967 + antisense lncRNA gene predicted gene 11640
Gm39417 11 105449701 to 105474551 24850 + lncRNA gene predicted gene, 39417
Tssr105440 11 105452965 to 105452983 18 + TSS region transcription start site region 105440
Tssr111262 11 105455277 to 105455288 11 - TSS region transcription start site region 111262
Tssr111263 11 105455299 to 105455325 26 - TSS region transcription start site region 111263
Cpgi4003 11 105456448 to 105456982 534 CpG island CpG island 4003
Tssr111264 11 105456674 to 105456751 77 - TSS region transcription start site region 111264
Tssr3699 11 105456759 to 105456764 5 - TSS region transcription start site region 3699
Gm35828 11 105504266 to 105517449 13183 + lncRNA gene predicted gene, 35828
Gm39419 11 105517480 to 105519850 2370 + lncRNA gene predicted gene, 39419
Gm39422 11 105552757 to 105577590 24833 + lncRNA gene predicted gene, 39422
Cpgi4004 11 105589234 to 105590679 1445 CpG island CpG island 4004
Tssr105441 11 105589442 to 105589476 34 + TSS region transcription start site region 105441
Tssr105442 11 105589733 to 105589748 15 + TSS region transcription start site region 105442
Tssr105443 11 105589758 to 105589808 50 + TSS region transcription start site region 105443
Tssr105444 11 105589828 to 105589835 7 + TSS region transcription start site region 105444
Tssr3700 11 105589962 to 105589966 4 + TSS region transcription start site region 3700
Tssr105445 11 105589970 to 105590028 58 + TSS region transcription start site region 105445
Tanc2 11 105589986 to 105929304 339318 + protein coding gene tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
Tssr105446 11 105590054 to 105590090 36 + TSS region transcription start site region 105446
Gm23990 11 105597625 to 105597741 116 + miRNA gene predicted gene, 23990
Tssr105447 11 105634540 to 105634546 6 + TSS region transcription start site region 105447
Tssr105448 11 105655534 to 105655544 10 + TSS region transcription start site region 105448
Tssr105449 11 105655548 to 105655579 31 + TSS region transcription start site region 105449
Tssr105450 11 105655583 to 105655617 34 + TSS region transcription start site region 105450
Tssr105451 11 105731728 to 105731753 25 + TSS region transcription start site region 105451
Tssr105452 11 105731758 to 105731781 23 + TSS region transcription start site region 105452
Tssr105453 11 105731815 to 105731827 12 + TSS region transcription start site region 105453
Gm11652 11 105773518 to 105774784 1266 + pseudogene predicted gene 11652
Tssr105454 11 105784812 to 105784825 13 + TSS region transcription start site region 105454
Gm11653 11 105875905 to 105876913 1008 + pseudogene predicted gene 11653
Tssr105455 11 105901896 to 105901910 14 + TSS region transcription start site region 105455
Tssr105456 11 105901972 to 105901984 12 + TSS region transcription start site region 105456
Tssr105457 11 105913980 to 105914009 29 + TSS region transcription start site region 105457
Tssr105458 11 105922946 to 105922958 12 + TSS region transcription start site region 105458
Cyb561 11 105933702 to 105945118 11416 - protein coding gene cytochrome b-561
Tssr111265 11 105936294 to 105936301 7 - TSS region transcription start site region 111265
Tssr111266 11 105936303 to 105936316 13 - TSS region transcription start site region 111266
Tssr111267 11 105936327 to 105936342 15 - TSS region transcription start site region 111267
Tssr111268 11 105936482 to 105936490 8 - TSS region transcription start site region 111268
Tssr111269 11 105936510 to 105936524 14 - TSS region transcription start site region 111269
Gm46296 11 105936828 to 105939793 2965 + lncRNA gene predicted gene, 46296
Tssr111270 11 105936904 to 105936914 10 - TSS region transcription start site region 111270
Tssr111271 11 105936915 to 105936933 18 - TSS region transcription start site region 111271
Tssr111272 11 105937844 to 105937871 27 - TSS region transcription start site region 111272
Tssr111273 11 105938560 to 105938567 7 - TSS region transcription start site region 111273
Tssr111274 11 105938968 to 105938983 15 - TSS region transcription start site region 111274
Tssr111275 11 105939954 to 105939961 7 - TSS region transcription start site region 111275
Tssr111276 11 105939987 to 105939997 10 - TSS region transcription start site region 111276
Tssr111277 11 105940207 to 105940236 29 - TSS region transcription start site region 111277
Tssr105459 11 105943347 to 105943358 11 + TSS region transcription start site region 105459
Cpgi4005 11 105943574 to 105944855 1281 CpG island CpG island 4005
Gm9910 11 105943704 to 105945253 1549 + protein coding gene predicted gene 9910
Tssr111278 11 105944128 to 105944223 95 - TSS region transcription start site region 111278
Tssr111279 11 105944478 to 105944518 40 - TSS region transcription start site region 111279
Tssr111280 11 105955846 to 105955855 9 - TSS region transcription start site region 111280
Cpgi4006 11 105955882 to 105956199 317 CpG island CpG island 4006
Tssr105460 11 105956005 to 105956020 15 + TSS region transcription start site region 105460
Cpgi4007 11 105959507 to 105959727 220 CpG island CpG island 4007
Gm11651 11 105965608 to 105985694 20086 - antisense lncRNA gene predicted gene 11651
Cpgi4008 11 105967470 to 105968609 1139 CpG island CpG island 4008
Tssr105461 11 105967642 to 105967662 20 + TSS region transcription start site region 105461
Tssr105462 11 105967914 to 105967927 13 + TSS region transcription start site region 105462
Tssr105463 11 105967938 to 105967956 18 + TSS region transcription start site region 105463
Ace 11 105967945 to 105989964 22019 + protein coding gene angiotensin I converting enzyme (peptidyl-dipeptidase A) 1
Tssr105464 11 105968515 to 105968523 8 + TSS region transcription start site region 105464
Tssr105465 11 105969685 to 105969704 19 + TSS region transcription start site region 105465
Tssr105466 11 105974639 to 105974658 19 + TSS region transcription start site region 105466
Tssr105467 11 105974662 to 105974681 19 + TSS region transcription start site region 105467
Tssr111281 11 105975079 to 105975091 12 - TSS region transcription start site region 111281
Tssr105468 11 105975181 to 105975195 14 + TSS region transcription start site region 105468
Tssr105469 11 105975204 to 105975215 11 + TSS region transcription start site region 105469
Tssr3701 11 105975220 to 105975227 7 + TSS region transcription start site region 3701
D11Mit13 11 105975635 to 105975795 160 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 13
Tssr105470 11 105985737 to 105985751 14 + TSS region transcription start site region 105470
Tssr105471 11 105985754 to 105985778 24 + TSS region transcription start site region 105471
Tssr3702 11 105985788 to 105985792 4 + TSS region transcription start site region 3702
Cpgi4009 11 105988634 to 105989020 386 CpG island CpG island 4009
Tssr105472 11 105989247 to 105989256 9 + TSS region transcription start site region 105472
Tssr105473 11 105994617 to 105994624 7 + TSS region transcription start site region 105473
Tssr105474 11 105994635 to 105994678 43 + TSS region transcription start site region 105474
Ace3 11 105994675 to 106005443 10768 + protein coding gene angiotensin I converting enzyme (peptidyl-dipeptidase A) 3
Gm35971 11 105995584 to 106020559 24975 - lncRNA gene predicted gene, 35971
Cpgi4010 11 106007917 to 106008227 310 CpG island CpG island 4010
Kcnh6 11 106008124 to 106034549 26425 + protein coding gene potassium voltage-gated channel, subfamily H (eag-related), member 6
Tssr105475 11 106008142 to 106008162 20 + TSS region transcription start site region 105475
Cpgi4011 11 106018579 to 106019012 433 CpG island CpG island 4011
Cpgi4012 11 106020065 to 106020841 776 CpG island CpG island 4012
Tssr105476 11 106020115 to 106020167 52 + TSS region transcription start site region 105476