Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:105239442-105939476

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tlk2 11 105178807 to 105283959 105152 + protein coding gene tousled-like kinase 2 (Arabidopsis)
Tssr105432 11 105240381 to 105240401 20 + TSS region transcription start site region 105432
Tssr105433 11 105244171 to 105244179 8 + TSS region transcription start site region 105433
Tssr111260 11 105291488 to 105291492 4 - TSS region transcription start site region 111260
Cpgi4001 11 105291969 to 105293478 1509 CpG island CpG island 4001
Tssr105434 11 105292111 to 105292153 42 + TSS region transcription start site region 105434
Tssr105435 11 105292622 to 105292629 7 + TSS region transcription start site region 105435
Tssr105436 11 105292637 to 105292669 32 + TSS region transcription start site region 105436
Mrc2 11 105292643 to 105351139 58496 + protein coding gene mannose receptor, C type 2
Tssr105437 11 105292677 to 105292692 15 + TSS region transcription start site region 105437
Tssr105438 11 105292699 to 105292714 15 + TSS region transcription start site region 105438
Tssr105439 11 105304385 to 105304389 4 + TSS region transcription start site region 105439
March10 11 105360798 to 105456735 95937 - protein coding gene membrane-associated ring finger (C3HC4) 10
Cpgi4002 11 105362825 to 105363509 684 CpG island CpG island 4002
Gm11638 11 105363252 to 105390642 27390 + unclassified non-coding RNA gene predicted gene 11638
Tssr111261 11 105406714 to 105406718 4 - TSS region transcription start site region 111261
D11Mit166 11 105421194 to 105421337 143 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 166
Gm11640 11 105434445 to 105435412 967 + antisense lncRNA gene predicted gene 11640
Gm39417 11 105449701 to 105474551 24850 + lncRNA gene predicted gene, 39417
Tssr105440 11 105452965 to 105452983 18 + TSS region transcription start site region 105440
Tssr111262 11 105455277 to 105455288 11 - TSS region transcription start site region 111262
Tssr111263 11 105455299 to 105455325 26 - TSS region transcription start site region 111263
Cpgi4003 11 105456448 to 105456982 534 CpG island CpG island 4003
Tssr111264 11 105456674 to 105456751 77 - TSS region transcription start site region 111264
Tssr3699 11 105456759 to 105456764 5 - TSS region transcription start site region 3699
Gm35828 11 105504266 to 105517449 13183 + lncRNA gene predicted gene, 35828
Gm39419 11 105517480 to 105519850 2370 + lncRNA gene predicted gene, 39419
Gm39422 11 105552757 to 105577590 24833 + lncRNA gene predicted gene, 39422
Cpgi4004 11 105589234 to 105590679 1445 CpG island CpG island 4004
Tssr105441 11 105589442 to 105589476 34 + TSS region transcription start site region 105441
Tssr105442 11 105589733 to 105589748 15 + TSS region transcription start site region 105442
Tssr105443 11 105589758 to 105589808 50 + TSS region transcription start site region 105443
Tssr105444 11 105589828 to 105589835 7 + TSS region transcription start site region 105444
Tssr3700 11 105589962 to 105589966 4 + TSS region transcription start site region 3700
Tssr105445 11 105589970 to 105590028 58 + TSS region transcription start site region 105445
Tanc2 11 105589986 to 105929304 339318 + protein coding gene tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
Tssr105446 11 105590054 to 105590090 36 + TSS region transcription start site region 105446
Gm23990 11 105597625 to 105597741 116 + miRNA gene predicted gene, 23990
Tssr105447 11 105634540 to 105634546 6 + TSS region transcription start site region 105447
Tssr105448 11 105655534 to 105655544 10 + TSS region transcription start site region 105448
Tssr105449 11 105655548 to 105655579 31 + TSS region transcription start site region 105449
Tssr105450 11 105655583 to 105655617 34 + TSS region transcription start site region 105450
Tssr105451 11 105731728 to 105731753 25 + TSS region transcription start site region 105451
Tssr105452 11 105731758 to 105731781 23 + TSS region transcription start site region 105452
Tssr105453 11 105731815 to 105731827 12 + TSS region transcription start site region 105453
Gm11652 11 105773518 to 105774784 1266 + pseudogene predicted gene 11652
Tssr105454 11 105784812 to 105784825 13 + TSS region transcription start site region 105454
Gm11653 11 105875905 to 105876913 1008 + pseudogene predicted gene 11653
Tssr105455 11 105901896 to 105901910 14 + TSS region transcription start site region 105455
Tssr105456 11 105901972 to 105901984 12 + TSS region transcription start site region 105456
Tssr105457 11 105913980 to 105914009 29 + TSS region transcription start site region 105457
Tssr105458 11 105922946 to 105922958 12 + TSS region transcription start site region 105458
Cyb561 11 105933702 to 105945118 11416 - protein coding gene cytochrome b-561
Tssr111265 11 105936294 to 105936301 7 - TSS region transcription start site region 111265
Tssr111266 11 105936303 to 105936316 13 - TSS region transcription start site region 111266
Tssr111267 11 105936327 to 105936342 15 - TSS region transcription start site region 111267
Tssr111268 11 105936482 to 105936490 8 - TSS region transcription start site region 111268
Tssr111269 11 105936510 to 105936524 14 - TSS region transcription start site region 111269
Gm46296 11 105936828 to 105939793 2965 + lncRNA gene predicted gene, 46296
Tssr111270 11 105936904 to 105936914 10 - TSS region transcription start site region 111270
Tssr111271 11 105936915 to 105936933 18 - TSS region transcription start site region 111271
Tssr111272 11 105937844 to 105937871 27 - TSS region transcription start site region 111272
Tssr111273 11 105938560 to 105938567 7 - TSS region transcription start site region 111273
Tssr111274 11 105938968 to 105938983 15 - TSS region transcription start site region 111274