Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:104547213-105637244

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122 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdc27 11 104502745 to 104550620 47875 - protein coding gene cell division cycle 27
Cpgi3992 11 104549941 to 104550856 915 CpG island CpG island 3992
Tssr105394 11 104550125 to 104550152 27 + TSS region transcription start site region 105394
Tssr111251 11 104550410 to 104550419 9 - TSS region transcription start site region 111251
Tssr111252 11 104550460 to 104550560 100 - TSS region transcription start site region 111252
Myl4 11 104550529 to 104587219 36690 + protein coding gene myosin, light polypeptide 4
Tssr111253 11 104550586 to 104550590 4 - TSS region transcription start site region 111253
Tssr111254 11 104550616 to 104550623 7 - TSS region transcription start site region 111254
Tssr105395 11 104550682 to 104550685 3 + TSS region transcription start site region 105395
Tssr105396 11 104550688 to 104550699 11 + TSS region transcription start site region 105396
Tssr105397 11 104550783 to 104550792 9 + TSS region transcription start site region 105397
Gm11665 11 104556789 to 104557777 988 - antisense lncRNA gene predicted gene 11665
Gm22000 11 104557922 to 104565661 7739 - unclassified non-coding RNA gene predicted gene 22000
Gm11661 11 104565549 to 104566714 1165 - pseudogene predicted gene 11661
Gm11663 11 104571268 to 104571557 289 - pseudogene predicted gene 11663
Cpgi3993 11 104571462 to 104571766 304 CpG island CpG island 3993
Gm7020 11 104573528 to 104574524 996 + protein coding gene predicted gene 7020
Tssr105398 11 104573540 to 104573558 18 + TSS region transcription start site region 105398
D11Mit58 11 104576437 to 104576669 232 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 58
Tssr105399 11 104576965 to 104576978 13 + TSS region transcription start site region 105399
Tssr105400 11 104577003 to 104577022 19 + TSS region transcription start site region 105400
Tssr105401 11 104577047 to 104577054 7 + TSS region transcription start site region 105401
Tssr105402 11 104577367 to 104577387 20 + TSS region transcription start site region 105402
Tssr105403 11 104580372 to 104580383 11 + TSS region transcription start site region 105403
Tssr105404 11 104581639 to 104581686 47 + TSS region transcription start site region 105404
Tssr105405 11 104582093 to 104582107 14 + TSS region transcription start site region 105405
Tssr105406 11 104582875 to 104582899 24 + TSS region transcription start site region 105406
Tssr105407 11 104584295 to 104584310 15 + TSS region transcription start site region 105407
Tssr105408 11 104586282 to 104586296 14 + TSS region transcription start site region 105408
Tssr105409 11 104607776 to 104607812 36 + TSS region transcription start site region 105409
Cpgi3994 11 104607786 to 104608689 903 CpG island CpG island 3994
Itgb3 11 104608000 to 104670476 62476 + protein coding gene integrin beta 3
Tssr105410 11 104608000 to 104608012 12 + TSS region transcription start site region 105410
Tssr105411 11 104608026 to 104608037 11 + TSS region transcription start site region 105411
Tssr105412 11 104608040 to 104608063 23 + TSS region transcription start site region 105412
Hbnr14 11 104611774 to 104611872 98 QTL Heligmosomoides bakeri nematode resistance 14
D11Mit10 11 104611774 to 104611872 98 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 10
T2dm5sa 11 104611872 to 79922933 -24688939 QTL type 2 diabetes mellitus 5 in SMXA RI mice
Tssr105413 11 104632275 to 104632310 35 + TSS region transcription start site region 105413
Tssr105414 11 104633575 to 104633615 40 + TSS region transcription start site region 105414
Cpgi3995 11 104637075 to 104637339 264 CpG island CpG island 3995
Tssr111255 11 104637213 to 104637229 16 - TSS region transcription start site region 111255
Tssr105415 11 104637349 to 104637365 16 + TSS region transcription start site region 105415
Tssr105416 11 104637393 to 104637402 9 + TSS region transcription start site region 105416
Tssr105417 11 104637540 to 104637547 7 + TSS region transcription start site region 105417
Tssr3698 11 104637553 to 104637563 10 + TSS region transcription start site region 3698
Gm11662 11 104679105 to 104680655 1550 - pseudogene predicted gene 11662
Cpgi3996 11 104685491 to 104685990 499 CpG island CpG island 3996
Tssr105418 11 104685701 to 104685714 13 + TSS region transcription start site region 105418
Tssr105419 11 104685737 to 104685746 9 + TSS region transcription start site region 105419
Efcab13 11 104690834 to 104779911 89077 + protein coding gene EF-hand calcium binding domain 13
Gm11639 11 104781209 to 105009110 227901 + protein coding gene predicted gene 11639
Gm11623 11 104814416 to 104815640 1224 + pseudogene predicted gene 11623
Gm11621 11 104928216 to 104928801 585 + pseudogene predicted gene 11621
Gm11622 11 105031157 to 105031847 690 + pseudogene predicted gene 11622
Gm11624 11 105033034 to 105034074 1040 - pseudogene predicted gene 11624
Efcab3 11 105063592 to 105117537 53945 + protein coding gene EF-hand calcium binding domain 3
Gm25362 11 105081628 to 105081732 104 + snRNA gene predicted gene, 25362
Tssr105420 11 105091860 to 105091884 24 + TSS region transcription start site region 105420
Tssr105421 11 105092194 to 105092201 7 + TSS region transcription start site region 105421
Tssr105422 11 105092213 to 105092244 31 + TSS region transcription start site region 105422
Cpgi3997 11 105112440 to 105112759 319 CpG island CpG island 3997
Cpgi3998 11 105126051 to 105127144 1093 CpG island CpG island 3998
Tssr111256 11 105126299 to 105126341 42 - TSS region transcription start site region 111256
Mettl2 11 105126425 to 105140394 13969 + protein coding gene methyltransferase like 2
Tssr105423 11 105126467 to 105126519 52 + TSS region transcription start site region 105423
Gm24290 11 105141214 to 105141309 95 + unclassified non-coding RNA gene predicted gene, 24290
Gm10842 11 105146893 to 105147261 368 + protein coding gene predicted gene 10842
Tssr105424 11 105156945 to 105156956 11 + TSS region transcription start site region 105424
Cpgi3999 11 105164639 to 105166692 2053 CpG island CpG island 3999
Tssr105425 11 105164695 to 105164706 11 + TSS region transcription start site region 105425
Gm11620 11 105164776 to 105166620 1844 - pseudogene predicted gene 11620
Tssr105426 11 105178720 to 105178737 17 + TSS region transcription start site region 105426
Tssr105427 11 105178765 to 105178771 6 + TSS region transcription start site region 105427
Tlk2 11 105178807 to 105283959 105152 + protein coding gene tousled-like kinase 2 (Arabidopsis)
1700052K11Rik 11 105179020 to 105181433 2413 - antisense lncRNA gene RIKEN cDNA 1700052K11 gene
Cpgi4000 11 105180560 to 105182465 1905 CpG island CpG island 4000
Tssr111257 11 105181201 to 105181242 41 - TSS region transcription start site region 111257
Tssr111258 11 105181322 to 105181365 43 - TSS region transcription start site region 111258
Tssr111259 11 105181367 to 105181387 20 - TSS region transcription start site region 111259
Tssr105428 11 105181546 to 105181598 52 + TSS region transcription start site region 105428
Tssr105429 11 105181637 to 105181663 26 + TSS region transcription start site region 105429
Tssr105430 11 105181858 to 105181892 34 + TSS region transcription start site region 105430
Tssr105431 11 105190804 to 105190808 4 + TSS region transcription start site region 105431
Tssr105432 11 105240381 to 105240401 20 + TSS region transcription start site region 105432
Tssr105433 11 105244171 to 105244179 8 + TSS region transcription start site region 105433
Tssr111260 11 105291488 to 105291492 4 - TSS region transcription start site region 111260
Cpgi4001 11 105291969 to 105293478 1509 CpG island CpG island 4001
Tssr105434 11 105292111 to 105292153 42 + TSS region transcription start site region 105434
Tssr105435 11 105292622 to 105292629 7 + TSS region transcription start site region 105435
Tssr105436 11 105292637 to 105292669 32 + TSS region transcription start site region 105436
Mrc2 11 105292643 to 105351139 58496 + protein coding gene mannose receptor, C type 2
Tssr105437 11 105292677 to 105292692 15 + TSS region transcription start site region 105437
Tssr105438 11 105292699 to 105292714 15 + TSS region transcription start site region 105438
Tssr105439 11 105304385 to 105304389 4 + TSS region transcription start site region 105439
March10 11 105360798 to 105456735 95937 - protein coding gene membrane-associated ring finger (C3HC4) 10
Cpgi4002 11 105362825 to 105363509 684 CpG island CpG island 4002
Gm11638 11 105363252 to 105390642 27390 + unclassified non-coding RNA gene predicted gene 11638
Tssr111261 11 105406714 to 105406718 4 - TSS region transcription start site region 111261
D11Mit166 11 105421194 to 105421337 143 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 166
Gm11640 11 105434445 to 105435412 967 + antisense lncRNA gene predicted gene 11640
Gm39417 11 105449701 to 105474551 24850 + lncRNA gene predicted gene, 39417
Tssr105440 11 105452965 to 105452983 18 + TSS region transcription start site region 105440
Tssr111262 11 105455277 to 105455288 11 - TSS region transcription start site region 111262
Tssr111263 11 105455299 to 105455325 26 - TSS region transcription start site region 111263
Cpgi4003 11 105456448 to 105456982 534 CpG island CpG island 4003
Tssr111264 11 105456674 to 105456751 77 - TSS region transcription start site region 111264
Tssr3699 11 105456759 to 105456764 5 - TSS region transcription start site region 3699
Gm35828 11 105504266 to 105517449 13183 + lncRNA gene predicted gene, 35828
Gm39419 11 105517480 to 105519850 2370 + lncRNA gene predicted gene, 39419
Gm39422 11 105552757 to 105577590 24833 + lncRNA gene predicted gene, 39422
Cpgi4004 11 105589234 to 105590679 1445 CpG island CpG island 4004
Tssr105441 11 105589442 to 105589476 34 + TSS region transcription start site region 105441
Tssr105442 11 105589733 to 105589748 15 + TSS region transcription start site region 105442
Tssr105443 11 105589758 to 105589808 50 + TSS region transcription start site region 105443
Tssr105444 11 105589828 to 105589835 7 + TSS region transcription start site region 105444
Tssr3700 11 105589962 to 105589966 4 + TSS region transcription start site region 3700
Tssr105445 11 105589970 to 105590028 58 + TSS region transcription start site region 105445
Tanc2 11 105589986 to 105929304 339318 + protein coding gene tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
Tssr105446 11 105590054 to 105590090 36 + TSS region transcription start site region 105446
Gm23990 11 105597625 to 105597741 116 + miRNA gene predicted gene, 23990
Tssr105447 11 105634540 to 105634546 6 + TSS region transcription start site region 105447