Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:104467074-104587081

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kansl1 11 104333229 to 104468861 135632 - protein coding gene KAT8 regulatory NSL complex subunit 1
Cpgi3991 11 104468679 to 104469840 1161 CpG island CpG island 3991
Tssr111245 11 104469432 to 104469467 35 - TSS region transcription start site region 111245
Gm11660 11 104491613 to 104492024 411 + pseudogene predicted gene 11660
Cdc27 11 104502745 to 104550620 47875 - protein coding gene cell division cycle 27
Tssr111246 11 104503232 to 104503253 21 - TSS region transcription start site region 111246
Tssr111247 11 104503442 to 104503445 3 - TSS region transcription start site region 111247
Tssr111248 11 104503508 to 104503536 28 - TSS region transcription start site region 111248
Tssr111249 11 104503677 to 104503725 48 - TSS region transcription start site region 111249
Tssr105393 11 104527074 to 104527081 7 + TSS region transcription start site region 105393
Tssr111250 11 104545922 to 104545927 5 - TSS region transcription start site region 111250
Cpgi3992 11 104549941 to 104550856 915 CpG island CpG island 3992
Tssr105394 11 104550125 to 104550152 27 + TSS region transcription start site region 105394
Tssr111251 11 104550410 to 104550419 9 - TSS region transcription start site region 111251
Tssr111252 11 104550460 to 104550560 100 - TSS region transcription start site region 111252
Myl4 11 104550529 to 104587219 36690 + protein coding gene myosin, light polypeptide 4
Tssr111253 11 104550586 to 104550590 4 - TSS region transcription start site region 111253
Tssr111254 11 104550616 to 104550623 7 - TSS region transcription start site region 111254
Tssr105395 11 104550682 to 104550685 3 + TSS region transcription start site region 105395
Tssr105396 11 104550688 to 104550699 11 + TSS region transcription start site region 105396
Tssr105397 11 104550783 to 104550792 9 + TSS region transcription start site region 105397
Gm11665 11 104556789 to 104557777 988 - antisense lncRNA gene predicted gene 11665
Gm22000 11 104557922 to 104565661 7739 - unclassified non-coding RNA gene predicted gene 22000
Gm11661 11 104565549 to 104566714 1165 - pseudogene predicted gene 11661
Gm11663 11 104571268 to 104571557 289 - pseudogene predicted gene 11663
Cpgi3993 11 104571462 to 104571766 304 CpG island CpG island 3993
Gm7020 11 104573528 to 104574524 996 + protein coding gene predicted gene 7020
Tssr105398 11 104573540 to 104573558 18 + TSS region transcription start site region 105398
D11Mit58 11 104576437 to 104576669 232 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 58
Tssr105399 11 104576965 to 104576978 13 + TSS region transcription start site region 105399
Tssr105400 11 104577003 to 104577022 19 + TSS region transcription start site region 105400
Tssr105401 11 104577047 to 104577054 7 + TSS region transcription start site region 105401
Tssr105402 11 104577367 to 104577387 20 + TSS region transcription start site region 105402
Tssr105403 11 104580372 to 104580383 11 + TSS region transcription start site region 105403
Tssr105404 11 104581639 to 104581686 47 + TSS region transcription start site region 105404
Tssr105405 11 104582093 to 104582107 14 + TSS region transcription start site region 105405
Tssr105406 11 104582875 to 104582899 24 + TSS region transcription start site region 105406
Tssr105407 11 104584295 to 104584310 15 + TSS region transcription start site region 105407
Tssr105408 11 104586282 to 104586296 14 + TSS region transcription start site region 105408