Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:103952864-104312876

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nsf 11 103821782 to 103954056 132274 - protein coding gene N-ethylmaleimide sensitive fusion protein
Cpgi3979 11 103953575 to 103954343 768 CpG island CpG island 3979
Tssr111225 11 103953997 to 103954014 17 - TSS region transcription start site region 111225
Tssr111226 11 103954015 to 103954034 19 - TSS region transcription start site region 111226
Tssr3692 11 103954044 to 103954046 2 - TSS region transcription start site region 3692
Tssr105362 11 103954126 to 103954141 15 + TSS region transcription start site region 105362
Tssr105363 11 103954147 to 103954175 28 + TSS region transcription start site region 105363
Tssr105364 11 103961816 to 103961848 32 + TSS region transcription start site region 105364
Tssr3693 11 103964043 to 103964054 11 - TSS region transcription start site region 3693
Cpgi3980 11 103966450 to 103967391 941 CpG island CpG island 3980
Tssr105365 11 103966716 to 103966790 74 + TSS region transcription start site region 105365
Arf2 11 103966739 to 103985337 18598 + protein coding gene ADP-ribosylation factor 2
Tssr105366 11 103979602 to 103979626 24 + TSS region transcription start site region 105366
Gm39399 11 103988930 to 103993252 4322 + lncRNA gene predicted gene, 39399
Gm35420 11 104030480 to 104033899 3419 + lncRNA gene predicted gene, 35420
Gm42092 11 104067087 to 104074172 7085 - lncRNA gene predicted gene, 42092
Cpgi3981 11 104072815 to 104073307 492 CpG island CpG island 3981
Cpgi3982 11 104131892 to 104134091 2199 CpG island CpG island 3982
Tssr105367 11 104132810 to 104132828 18 + TSS region transcription start site region 105367
Tssr105368 11 104132832 to 104132839 7 + TSS region transcription start site region 105368
Tssr105369 11 104132841 to 104132852 11 + TSS region transcription start site region 105369
Crhr1 11 104132855 to 104175523 42668 + protein coding gene corticotropin releasing hormone receptor 1
Tssr105370 11 104132864 to 104132876 12 + TSS region transcription start site region 105370
Gm35469 11 104145791 to 104159202 13411 - lncRNA gene predicted gene, 35469
Cpgi3983 11 104157883 to 104158139 256 CpG island CpG island 3983
Tssr3694 11 104160606 to 104160608 2 + TSS region transcription start site region 3694
Cpgi3984 11 104169762 to 104170292 530 CpG island CpG island 3984
Sppl2c 11 104186327 to 104191163 4836 + protein coding gene signal peptide peptidase 2C
Tssr105371 11 104186345 to 104186358 13 + TSS region transcription start site region 105371
Tssr105372 11 104191000 to 104191004 4 + TSS region transcription start site region 105372
Cpgi3985 11 104230972 to 104233231 2259 CpG island CpG island 3985
Mapt 11 104231390 to 104332090 100700 + protein coding gene microtubule-associated protein tau
Tssr105373 11 104231442 to 104231453 11 + TSS region transcription start site region 105373
Tssr105374 11 104231465 to 104231507 42 + TSS region transcription start site region 105374
Tssr105375 11 104231517 to 104231528 11 + TSS region transcription start site region 105375
Tssr3695 11 104231528 to 104231539 11 + TSS region transcription start site region 3695
Tssr105376 11 104231574 to 104231577 3 + TSS region transcription start site region 105376
Cpgi3986 11 104233796 to 104234135 339 CpG island CpG island 3986
Gm11659 11 104250902 to 104259361 8459 - antisense lncRNA gene predicted gene 11659
Gm22743 11 104251012 to 104251144 132 - snoRNA gene predicted gene, 22743
Gm47310 11 104251078 to 104251148 70 - miRNA gene predicted gene, 47310
Cpgi3987 11 104278282 to 104278503 221 CpG island CpG island 3987
Tssr105377 11 104282371 to 104282392 21 + TSS region transcription start site region 105377
Cpgi3988 11 104287124 to 104287467 343 CpG island CpG island 3988
Tssr105378 11 104289604 to 104289619 15 + TSS region transcription start site region 105378
Tssr105379 11 104296011 to 104296059 48 + TSS region transcription start site region 105379
Tssr105380 11 104296463 to 104296468 5 + TSS region transcription start site region 105380
Tssr111227 11 104301353 to 104301366 13 - TSS region transcription start site region 111227
Tssr111228 11 104302391 to 104302412 21 - TSS region transcription start site region 111228
Tssr105381 11 104306640 to 104306654 14 + TSS region transcription start site region 105381
Tssr105382 11 104306687 to 104306698 11 + TSS region transcription start site region 105382
Tssr3696 11 104306717 to 104306724 7 + TSS region transcription start site region 3696
Tssr105383 11 104309695 to 104309710 15 + TSS region transcription start site region 105383
Tssr105384 11 104309808 to 104309813 5 + TSS region transcription start site region 105384
Tssr105385 11 104310328 to 104310341 13 + TSS region transcription start site region 105385
Tssr105386 11 104310387 to 104310417 30 + TSS region transcription start site region 105386
Tssr105387 11 104310480 to 104310491 11 + TSS region transcription start site region 105387