Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:103795606-104525608

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109 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Wnt3 11 103774150 to 103817957 43807 + protein coding gene wingless-type MMTV integration site family, member 3
Cpgi3976 11 103795156 to 103795837 681 CpG island CpG island 3976
Cpgi3977 11 103808942 to 103810872 1930 CpG island CpG island 3977
4930405A07Rik 11 103809394 to 103809997 603 unclassified gene RIKEN cDNA 4930405A07 gene
Tssr105358 11 103809728 to 103809730 2 + TSS region transcription start site region 105358
Tssr111221 11 103810072 to 103810083 11 - TSS region transcription start site region 111221
Tssr105359 11 103810197 to 103810204 7 + TSS region transcription start site region 105359
Tssr105360 11 103810223 to 103810233 10 + TSS region transcription start site region 105360
Cpgi3978 11 103811020 to 103811596 576 CpG island CpG island 3978
Nsf 11 103821782 to 103954056 132274 - protein coding gene N-ethylmaleimide sensitive fusion protein
Tssr111222 11 103822717 to 103822733 16 - TSS region transcription start site region 111222
Gm35365 11 103843848 to 103846116 2268 - lncRNA gene predicted gene, 35365
Gm35311 11 103857678 to 103858888 1210 - lncRNA gene predicted gene, 35311
Gm8738 11 103879915 to 103880243 328 - pseudogene predicted gene 8738
Tssr105361 11 103894107 to 103894150 43 + TSS region transcription start site region 105361
Tssr111223 11 103901115 to 103901120 5 - TSS region transcription start site region 111223
Tssr111224 11 103938211 to 103938217 6 - TSS region transcription start site region 111224
Cpgi3979 11 103953575 to 103954343 768 CpG island CpG island 3979
Tssr111225 11 103953997 to 103954014 17 - TSS region transcription start site region 111225
Tssr111226 11 103954015 to 103954034 19 - TSS region transcription start site region 111226
Tssr3692 11 103954044 to 103954046 2 - TSS region transcription start site region 3692
Tssr105362 11 103954126 to 103954141 15 + TSS region transcription start site region 105362
Tssr105363 11 103954147 to 103954175 28 + TSS region transcription start site region 105363
Tssr105364 11 103961816 to 103961848 32 + TSS region transcription start site region 105364
Tssr3693 11 103964043 to 103964054 11 - TSS region transcription start site region 3693
Cpgi3980 11 103966450 to 103967391 941 CpG island CpG island 3980
Tssr105365 11 103966716 to 103966790 74 + TSS region transcription start site region 105365
Arf2 11 103966739 to 103985337 18598 + protein coding gene ADP-ribosylation factor 2
Tssr105366 11 103979602 to 103979626 24 + TSS region transcription start site region 105366
Gm39399 11 103988930 to 103993252 4322 + lncRNA gene predicted gene, 39399
Gm35420 11 104030480 to 104033899 3419 + lncRNA gene predicted gene, 35420
Gm42092 11 104067087 to 104074172 7085 - lncRNA gene predicted gene, 42092
Cpgi3981 11 104072815 to 104073307 492 CpG island CpG island 3981
Cpgi3982 11 104131892 to 104134091 2199 CpG island CpG island 3982
Tssr105367 11 104132810 to 104132828 18 + TSS region transcription start site region 105367
Tssr105368 11 104132832 to 104132839 7 + TSS region transcription start site region 105368
Tssr105369 11 104132841 to 104132852 11 + TSS region transcription start site region 105369
Crhr1 11 104132855 to 104175523 42668 + protein coding gene corticotropin releasing hormone receptor 1
Tssr105370 11 104132864 to 104132876 12 + TSS region transcription start site region 105370
Gm35469 11 104145791 to 104159202 13411 - lncRNA gene predicted gene, 35469
Cpgi3983 11 104157883 to 104158139 256 CpG island CpG island 3983
Tssr3694 11 104160606 to 104160608 2 + TSS region transcription start site region 3694
Cpgi3984 11 104169762 to 104170292 530 CpG island CpG island 3984
Sppl2c 11 104186327 to 104191163 4836 + protein coding gene signal peptide peptidase 2C
Tssr105371 11 104186345 to 104186358 13 + TSS region transcription start site region 105371
Tssr105372 11 104191000 to 104191004 4 + TSS region transcription start site region 105372
Cpgi3985 11 104230972 to 104233231 2259 CpG island CpG island 3985
Mapt 11 104231390 to 104332090 100700 + protein coding gene microtubule-associated protein tau
Tssr105373 11 104231442 to 104231453 11 + TSS region transcription start site region 105373
Tssr105374 11 104231465 to 104231507 42 + TSS region transcription start site region 105374
Tssr105375 11 104231517 to 104231528 11 + TSS region transcription start site region 105375
Tssr3695 11 104231528 to 104231539 11 + TSS region transcription start site region 3695
Tssr105376 11 104231574 to 104231577 3 + TSS region transcription start site region 105376
Cpgi3986 11 104233796 to 104234135 339 CpG island CpG island 3986
Gm11659 11 104250902 to 104259361 8459 - antisense lncRNA gene predicted gene 11659
Gm22743 11 104251012 to 104251144 132 - snoRNA gene predicted gene, 22743
Gm47310 11 104251078 to 104251148 70 - miRNA gene predicted gene, 47310
Cpgi3987 11 104278282 to 104278503 221 CpG island CpG island 3987
Tssr105377 11 104282371 to 104282392 21 + TSS region transcription start site region 105377
Cpgi3988 11 104287124 to 104287467 343 CpG island CpG island 3988
Tssr105378 11 104289604 to 104289619 15 + TSS region transcription start site region 105378
Tssr105379 11 104296011 to 104296059 48 + TSS region transcription start site region 105379
Tssr105380 11 104296463 to 104296468 5 + TSS region transcription start site region 105380
Tssr111227 11 104301353 to 104301366 13 - TSS region transcription start site region 111227
Tssr111228 11 104302391 to 104302412 21 - TSS region transcription start site region 111228
Tssr105381 11 104306640 to 104306654 14 + TSS region transcription start site region 105381
Tssr105382 11 104306687 to 104306698 11 + TSS region transcription start site region 105382
Tssr3696 11 104306717 to 104306724 7 + TSS region transcription start site region 3696
Tssr105383 11 104309695 to 104309710 15 + TSS region transcription start site region 105383
Tssr105384 11 104309808 to 104309813 5 + TSS region transcription start site region 105384
Tssr105385 11 104310328 to 104310341 13 + TSS region transcription start site region 105385
Tssr105386 11 104310387 to 104310417 30 + TSS region transcription start site region 105386
Tssr105387 11 104310480 to 104310491 11 + TSS region transcription start site region 105387
Cpgi3989 11 104319122 to 104319486 364 CpG island CpG island 3989
Tssr105388 11 104321343 to 104321359 16 + TSS region transcription start site region 105388
Tssr111229 11 104328238 to 104328242 4 - TSS region transcription start site region 111229
Tssr105389 11 104328576 to 104328598 22 + TSS region transcription start site region 105389
Tssr105390 11 104329767 to 104329784 17 + TSS region transcription start site region 105390
Tssr3697 11 104329917 to 104329928 11 + TSS region transcription start site region 3697
Tssr105391 11 104329957 to 104329969 12 + TSS region transcription start site region 105391
Kansl1 11 104333229 to 104468861 135632 - protein coding gene KAT8 regulatory NSL complex subunit 1
Tssr111230 11 104341278 to 104341294 16 - TSS region transcription start site region 111230
Tssr111231 11 104352384 to 104352387 3 - TSS region transcription start site region 111231
Tssr111232 11 104367244 to 104367248 4 - TSS region transcription start site region 111232
Tssr111233 11 104370017 to 104370022 5 - TSS region transcription start site region 111233
Tssr111234 11 104377377 to 104377380 3 - TSS region transcription start site region 111234
Tssr111235 11 104402857 to 104402862 5 - TSS region transcription start site region 111235
Tssr111236 11 104403595 to 104403597 2 - TSS region transcription start site region 111236
D11Ertd726e 11 104405633 to 104405843 210 DNA segment DNA segment, Chr 11, ERATO Doi 726, expressed
Tssr111237 11 104417028 to 104417052 24 - TSS region transcription start site region 111237
Gm47315 11 104425156 to 104425300 144 - miRNA gene predicted gene, 47315
D030002E05Rik 11 104437697 to 104440950 3253 unclassified gene RIKEN cDNA D030002E05 gene
Cpgi3990 11 104441487 to 104443134 1647 CpG island CpG island 3990
Tssr111238 11 104441740 to 104441795 55 - TSS region transcription start site region 111238
Tssr111239 11 104441804 to 104441870 66 - TSS region transcription start site region 111239
Tssr111240 11 104442232 to 104442291 59 - TSS region transcription start site region 111240
Tssr111241 11 104442309 to 104442327 18 - TSS region transcription start site region 111241
Tssr111242 11 104442332 to 104442380 48 - TSS region transcription start site region 111242
Tssr105392 11 104442474 to 104442490 16 + TSS region transcription start site region 105392
Tssr111243 11 104443506 to 104443518 12 - TSS region transcription start site region 111243
Tssr111244 11 104464808 to 104464814 6 - TSS region transcription start site region 111244
Cpgi3991 11 104468679 to 104469840 1161 CpG island CpG island 3991
Tssr111245 11 104469432 to 104469467 35 - TSS region transcription start site region 111245
Gm11660 11 104491613 to 104492024 411 + pseudogene predicted gene 11660
Cdc27 11 104502745 to 104550620 47875 - protein coding gene cell division cycle 27
Tssr111246 11 104503232 to 104503253 21 - TSS region transcription start site region 111246
Tssr111247 11 104503442 to 104503445 3 - TSS region transcription start site region 111247
Tssr111248 11 104503508 to 104503536 28 - TSS region transcription start site region 111248
Tssr111249 11 104503677 to 104503725 48 - TSS region transcription start site region 111249