Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:103751467-106501519

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481 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi3975 11 103773403 to 103774541 1138 CpG island CpG island 3975
Wnt3 11 103774150 to 103817957 43807 + protein coding gene wingless-type MMTV integration site family, member 3
Tssr105357 11 103774165 to 103774193 28 + TSS region transcription start site region 105357
Cpgi3976 11 103795156 to 103795837 681 CpG island CpG island 3976
Cpgi3977 11 103808942 to 103810872 1930 CpG island CpG island 3977
4930405A07Rik 11 103809394 to 103809997 603 unclassified gene RIKEN cDNA 4930405A07 gene
Tssr105358 11 103809728 to 103809730 2 + TSS region transcription start site region 105358
Tssr111221 11 103810072 to 103810083 11 - TSS region transcription start site region 111221
Tssr105359 11 103810197 to 103810204 7 + TSS region transcription start site region 105359
Tssr105360 11 103810223 to 103810233 10 + TSS region transcription start site region 105360
Cpgi3978 11 103811020 to 103811596 576 CpG island CpG island 3978
Nsf 11 103821782 to 103954056 132274 - protein coding gene N-ethylmaleimide sensitive fusion protein
Tssr111222 11 103822717 to 103822733 16 - TSS region transcription start site region 111222
Gm35365 11 103843848 to 103846116 2268 - lncRNA gene predicted gene, 35365
Gm35311 11 103857678 to 103858888 1210 - lncRNA gene predicted gene, 35311
Gm8738 11 103879915 to 103880243 328 - pseudogene predicted gene 8738
Tssr105361 11 103894107 to 103894150 43 + TSS region transcription start site region 105361
Tssr111223 11 103901115 to 103901120 5 - TSS region transcription start site region 111223
Tssr111224 11 103938211 to 103938217 6 - TSS region transcription start site region 111224
Cpgi3979 11 103953575 to 103954343 768 CpG island CpG island 3979
Tssr111225 11 103953997 to 103954014 17 - TSS region transcription start site region 111225
Tssr111226 11 103954015 to 103954034 19 - TSS region transcription start site region 111226
Tssr3692 11 103954044 to 103954046 2 - TSS region transcription start site region 3692
Tssr105362 11 103954126 to 103954141 15 + TSS region transcription start site region 105362
Tssr105363 11 103954147 to 103954175 28 + TSS region transcription start site region 105363
Tssr105364 11 103961816 to 103961848 32 + TSS region transcription start site region 105364
Tssr3693 11 103964043 to 103964054 11 - TSS region transcription start site region 3693
Cpgi3980 11 103966450 to 103967391 941 CpG island CpG island 3980
Tssr105365 11 103966716 to 103966790 74 + TSS region transcription start site region 105365
Arf2 11 103966739 to 103985337 18598 + protein coding gene ADP-ribosylation factor 2
Tssr105366 11 103979602 to 103979626 24 + TSS region transcription start site region 105366
Gm39399 11 103988930 to 103993252 4322 + lncRNA gene predicted gene, 39399
Gm35420 11 104030480 to 104033899 3419 + lncRNA gene predicted gene, 35420
Gm42092 11 104067087 to 104074172 7085 - lncRNA gene predicted gene, 42092
Cpgi3981 11 104072815 to 104073307 492 CpG island CpG island 3981
Cpgi3982 11 104131892 to 104134091 2199 CpG island CpG island 3982
Tssr105367 11 104132810 to 104132828 18 + TSS region transcription start site region 105367
Tssr105368 11 104132832 to 104132839 7 + TSS region transcription start site region 105368
Tssr105369 11 104132841 to 104132852 11 + TSS region transcription start site region 105369
Crhr1 11 104132855 to 104175523 42668 + protein coding gene corticotropin releasing hormone receptor 1
Tssr105370 11 104132864 to 104132876 12 + TSS region transcription start site region 105370
Gm35469 11 104145791 to 104159202 13411 - lncRNA gene predicted gene, 35469
Cpgi3983 11 104157883 to 104158139 256 CpG island CpG island 3983
Tssr3694 11 104160606 to 104160608 2 + TSS region transcription start site region 3694
Cpgi3984 11 104169762 to 104170292 530 CpG island CpG island 3984
Sppl2c 11 104186327 to 104191163 4836 + protein coding gene signal peptide peptidase 2C
Tssr105371 11 104186345 to 104186358 13 + TSS region transcription start site region 105371
Tssr105372 11 104191000 to 104191004 4 + TSS region transcription start site region 105372
Cpgi3985 11 104230972 to 104233231 2259 CpG island CpG island 3985
Mapt 11 104231390 to 104332090 100700 + protein coding gene microtubule-associated protein tau
Tssr105373 11 104231442 to 104231453 11 + TSS region transcription start site region 105373
Tssr105374 11 104231465 to 104231507 42 + TSS region transcription start site region 105374
Tssr105375 11 104231517 to 104231528 11 + TSS region transcription start site region 105375
Tssr3695 11 104231528 to 104231539 11 + TSS region transcription start site region 3695
Tssr105376 11 104231574 to 104231577 3 + TSS region transcription start site region 105376
Cpgi3986 11 104233796 to 104234135 339 CpG island CpG island 3986
Gm11659 11 104250902 to 104259361 8459 - antisense lncRNA gene predicted gene 11659
Gm22743 11 104251012 to 104251144 132 - snoRNA gene predicted gene, 22743
Gm47310 11 104251078 to 104251148 70 - miRNA gene predicted gene, 47310
Cpgi3987 11 104278282 to 104278503 221 CpG island CpG island 3987
Tssr105377 11 104282371 to 104282392 21 + TSS region transcription start site region 105377
Cpgi3988 11 104287124 to 104287467 343 CpG island CpG island 3988
Tssr105378 11 104289604 to 104289619 15 + TSS region transcription start site region 105378
Tssr105379 11 104296011 to 104296059 48 + TSS region transcription start site region 105379
Tssr105380 11 104296463 to 104296468 5 + TSS region transcription start site region 105380
Tssr111227 11 104301353 to 104301366 13 - TSS region transcription start site region 111227
Tssr111228 11 104302391 to 104302412 21 - TSS region transcription start site region 111228
Tssr105381 11 104306640 to 104306654 14 + TSS region transcription start site region 105381
Tssr105382 11 104306687 to 104306698 11 + TSS region transcription start site region 105382
Tssr3696 11 104306717 to 104306724 7 + TSS region transcription start site region 3696
Tssr105383 11 104309695 to 104309710 15 + TSS region transcription start site region 105383
Tssr105384 11 104309808 to 104309813 5 + TSS region transcription start site region 105384
Tssr105385 11 104310328 to 104310341 13 + TSS region transcription start site region 105385
Tssr105386 11 104310387 to 104310417 30 + TSS region transcription start site region 105386
Tssr105387 11 104310480 to 104310491 11 + TSS region transcription start site region 105387
Cpgi3989 11 104319122 to 104319486 364 CpG island CpG island 3989
Tssr105388 11 104321343 to 104321359 16 + TSS region transcription start site region 105388
Tssr111229 11 104328238 to 104328242 4 - TSS region transcription start site region 111229
Tssr105389 11 104328576 to 104328598 22 + TSS region transcription start site region 105389
Tssr105390 11 104329767 to 104329784 17 + TSS region transcription start site region 105390
Tssr3697 11 104329917 to 104329928 11 + TSS region transcription start site region 3697
Tssr105391 11 104329957 to 104329969 12 + TSS region transcription start site region 105391
Kansl1 11 104333229 to 104468861 135632 - protein coding gene KAT8 regulatory NSL complex subunit 1
Tssr111230 11 104341278 to 104341294 16 - TSS region transcription start site region 111230
Tssr111231 11 104352384 to 104352387 3 - TSS region transcription start site region 111231
Tssr111232 11 104367244 to 104367248 4 - TSS region transcription start site region 111232
Tssr111233 11 104370017 to 104370022 5 - TSS region transcription start site region 111233
Tssr111234 11 104377377 to 104377380 3 - TSS region transcription start site region 111234
Tssr111235 11 104402857 to 104402862 5 - TSS region transcription start site region 111235
Tssr111236 11 104403595 to 104403597 2 - TSS region transcription start site region 111236
D11Ertd726e 11 104405633 to 104405843 210 DNA segment DNA segment, Chr 11, ERATO Doi 726, expressed
Tssr111237 11 104417028 to 104417052 24 - TSS region transcription start site region 111237
Gm47315 11 104425156 to 104425300 144 - miRNA gene predicted gene, 47315
D030002E05Rik 11 104437697 to 104440950 3253 unclassified gene RIKEN cDNA D030002E05 gene
Cpgi3990 11 104441487 to 104443134 1647 CpG island CpG island 3990
Tssr111238 11 104441740 to 104441795 55 - TSS region transcription start site region 111238
Tssr111239 11 104441804 to 104441870 66 - TSS region transcription start site region 111239
Tssr111240 11 104442232 to 104442291 59 - TSS region transcription start site region 111240
Tssr111241 11 104442309 to 104442327 18 - TSS region transcription start site region 111241
Tssr111242 11 104442332 to 104442380 48 - TSS region transcription start site region 111242
Tssr105392 11 104442474 to 104442490 16 + TSS region transcription start site region 105392
Tssr111243 11 104443506 to 104443518 12 - TSS region transcription start site region 111243
Tssr111244 11 104464808 to 104464814 6 - TSS region transcription start site region 111244
Cpgi3991 11 104468679 to 104469840 1161 CpG island CpG island 3991
Tssr111245 11 104469432 to 104469467 35 - TSS region transcription start site region 111245
Gm11660 11 104491613 to 104492024 411 + pseudogene predicted gene 11660
Cdc27 11 104502745 to 104550620 47875 - protein coding gene cell division cycle 27
Tssr111246 11 104503232 to 104503253 21 - TSS region transcription start site region 111246
Tssr111247 11 104503442 to 104503445 3 - TSS region transcription start site region 111247
Tssr111248 11 104503508 to 104503536 28 - TSS region transcription start site region 111248
Tssr111249 11 104503677 to 104503725 48 - TSS region transcription start site region 111249
Tssr105393 11 104527074 to 104527081 7 + TSS region transcription start site region 105393
Tssr111250 11 104545922 to 104545927 5 - TSS region transcription start site region 111250
Cpgi3992 11 104549941 to 104550856 915 CpG island CpG island 3992
Tssr105394 11 104550125 to 104550152 27 + TSS region transcription start site region 105394
Tssr111251 11 104550410 to 104550419 9 - TSS region transcription start site region 111251
Tssr111252 11 104550460 to 104550560 100 - TSS region transcription start site region 111252
Myl4 11 104550529 to 104587219 36690 + protein coding gene myosin, light polypeptide 4
Tssr111253 11 104550586 to 104550590 4 - TSS region transcription start site region 111253
Tssr111254 11 104550616 to 104550623 7 - TSS region transcription start site region 111254
Tssr105395 11 104550682 to 104550685 3 + TSS region transcription start site region 105395
Tssr105396 11 104550688 to 104550699 11 + TSS region transcription start site region 105396
Tssr105397 11 104550783 to 104550792 9 + TSS region transcription start site region 105397
Gm11665 11 104556789 to 104557777 988 - antisense lncRNA gene predicted gene 11665
Gm22000 11 104557922 to 104565661 7739 - unclassified non-coding RNA gene predicted gene 22000
Gm11661 11 104565549 to 104566714 1165 - pseudogene predicted gene 11661
Gm11663 11 104571268 to 104571557 289 - pseudogene predicted gene 11663
Cpgi3993 11 104571462 to 104571766 304 CpG island CpG island 3993
Gm7020 11 104573528 to 104574524 996 + protein coding gene predicted gene 7020
Tssr105398 11 104573540 to 104573558 18 + TSS region transcription start site region 105398
D11Mit58 11 104576437 to 104576669 232 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 58
Tssr105399 11 104576965 to 104576978 13 + TSS region transcription start site region 105399
Tssr105400 11 104577003 to 104577022 19 + TSS region transcription start site region 105400
Tssr105401 11 104577047 to 104577054 7 + TSS region transcription start site region 105401
Tssr105402 11 104577367 to 104577387 20 + TSS region transcription start site region 105402
Tssr105403 11 104580372 to 104580383 11 + TSS region transcription start site region 105403
Tssr105404 11 104581639 to 104581686 47 + TSS region transcription start site region 105404
Tssr105405 11 104582093 to 104582107 14 + TSS region transcription start site region 105405
Tssr105406 11 104582875 to 104582899 24 + TSS region transcription start site region 105406
Tssr105407 11 104584295 to 104584310 15 + TSS region transcription start site region 105407
Tssr105408 11 104586282 to 104586296 14 + TSS region transcription start site region 105408
Tssr105409 11 104607776 to 104607812 36 + TSS region transcription start site region 105409
Cpgi3994 11 104607786 to 104608689 903 CpG island CpG island 3994
Itgb3 11 104608000 to 104670476 62476 + protein coding gene integrin beta 3
Tssr105410 11 104608000 to 104608012 12 + TSS region transcription start site region 105410
Tssr105411 11 104608026 to 104608037 11 + TSS region transcription start site region 105411
Tssr105412 11 104608040 to 104608063 23 + TSS region transcription start site region 105412
D11Mit10 11 104611774 to 104611872 98 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 10
Hbnr14 11 104611774 to 104611872 98 QTL Heligmosomoides bakeri nematode resistance 14
T2dm5sa 11 104611872 to 79922933 -24688939 QTL type 2 diabetes mellitus 5 in SMXA RI mice
Tssr105413 11 104632275 to 104632310 35 + TSS region transcription start site region 105413
Tssr105414 11 104633575 to 104633615 40 + TSS region transcription start site region 105414
Cpgi3995 11 104637075 to 104637339 264 CpG island CpG island 3995
Tssr111255 11 104637213 to 104637229 16 - TSS region transcription start site region 111255
Tssr105415 11 104637349 to 104637365 16 + TSS region transcription start site region 105415
Tssr105416 11 104637393 to 104637402 9 + TSS region transcription start site region 105416
Tssr105417 11 104637540 to 104637547 7 + TSS region transcription start site region 105417
Tssr3698 11 104637553 to 104637563 10 + TSS region transcription start site region 3698
Gm11662 11 104679105 to 104680655 1550 - pseudogene predicted gene 11662
Cpgi3996 11 104685491 to 104685990 499 CpG island CpG island 3996
Tssr105418 11 104685701 to 104685714 13 + TSS region transcription start site region 105418
Tssr105419 11 104685737 to 104685746 9 + TSS region transcription start site region 105419
Efcab13 11 104690834 to 104779911 89077 + protein coding gene EF-hand calcium binding domain 13
Gm11639 11 104781209 to 105009110 227901 + protein coding gene predicted gene 11639
Gm11623 11 104814416 to 104815640 1224 + pseudogene predicted gene 11623
Gm11621 11 104928216 to 104928801 585 + pseudogene predicted gene 11621
Gm11622 11 105031157 to 105031847 690 + pseudogene predicted gene 11622
Gm11624 11 105033034 to 105034074 1040 - pseudogene predicted gene 11624
Efcab3 11 105063592 to 105117537 53945 + protein coding gene EF-hand calcium binding domain 3
Gm25362 11 105081628 to 105081732 104 + snRNA gene predicted gene, 25362
Tssr105420 11 105091860 to 105091884 24 + TSS region transcription start site region 105420
Tssr105421 11 105092194 to 105092201 7 + TSS region transcription start site region 105421
Tssr105422 11 105092213 to 105092244 31 + TSS region transcription start site region 105422
Cpgi3997 11 105112440 to 105112759 319 CpG island CpG island 3997
Cpgi3998 11 105126051 to 105127144 1093 CpG island CpG island 3998
Tssr111256 11 105126299 to 105126341 42 - TSS region transcription start site region 111256
Mettl2 11 105126425 to 105140394 13969 + protein coding gene methyltransferase like 2
Tssr105423 11 105126467 to 105126519 52 + TSS region transcription start site region 105423
Gm24290 11 105141214 to 105141309 95 + unclassified non-coding RNA gene predicted gene, 24290
Gm10842 11 105146893 to 105147261 368 + protein coding gene predicted gene 10842
Tssr105424 11 105156945 to 105156956 11 + TSS region transcription start site region 105424
Cpgi3999 11 105164639 to 105166692 2053 CpG island CpG island 3999
Tssr105425 11 105164695 to 105164706 11 + TSS region transcription start site region 105425
Gm11620 11 105164776 to 105166620 1844 - pseudogene predicted gene 11620
Tssr105426 11 105178720 to 105178737 17 + TSS region transcription start site region 105426
Tssr105427 11 105178765 to 105178771 6 + TSS region transcription start site region 105427
Tlk2 11 105178807 to 105283959 105152 + protein coding gene tousled-like kinase 2 (Arabidopsis)
1700052K11Rik 11 105179020 to 105181433 2413 - antisense lncRNA gene RIKEN cDNA 1700052K11 gene
Cpgi4000 11 105180560 to 105182465 1905 CpG island CpG island 4000
Tssr111257 11 105181201 to 105181242 41 - TSS region transcription start site region 111257
Tssr111258 11 105181322 to 105181365 43 - TSS region transcription start site region 111258
Tssr111259 11 105181367 to 105181387 20 - TSS region transcription start site region 111259
Tssr105428 11 105181546 to 105181598 52 + TSS region transcription start site region 105428
Tssr105429 11 105181637 to 105181663 26 + TSS region transcription start site region 105429
Tssr105430 11 105181858 to 105181892 34 + TSS region transcription start site region 105430
Tssr105431 11 105190804 to 105190808 4 + TSS region transcription start site region 105431
Tssr105432 11 105240381 to 105240401 20 + TSS region transcription start site region 105432
Tssr105433 11 105244171 to 105244179 8 + TSS region transcription start site region 105433
Tssr111260 11 105291488 to 105291492 4 - TSS region transcription start site region 111260
Cpgi4001 11 105291969 to 105293478 1509 CpG island CpG island 4001