Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:103704043-104224054

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
C130046K22Rik 11 103697724 to 103722832 25108 + lncRNA gene RIKEN cDNA C130046K22 gene
Gm11642 11 103723950 to 103724532 582 + unclassified non-coding RNA gene predicted gene 11642
Wnt9b 11 103727364 to 103749821 22457 - protein coding gene wingless-type MMTV integration site family, member 9B
Cpgi3973 11 103730580 to 103731197 617 CpG island CpG island 3973
Cpgi3974 11 103749297 to 103750352 1055 CpG island CpG island 3974
Tssr111220 11 103749815 to 103749829 14 - TSS region transcription start site region 111220
Cpgi3975 11 103773403 to 103774541 1138 CpG island CpG island 3975
Wnt3 11 103774150 to 103817957 43807 + protein coding gene wingless-type MMTV integration site family, member 3
Tssr105357 11 103774165 to 103774193 28 + TSS region transcription start site region 105357
Cpgi3976 11 103795156 to 103795837 681 CpG island CpG island 3976
Cpgi3977 11 103808942 to 103810872 1930 CpG island CpG island 3977
4930405A07Rik 11 103809394 to 103809997 603 unclassified gene RIKEN cDNA 4930405A07 gene
Tssr105358 11 103809728 to 103809730 2 + TSS region transcription start site region 105358
Tssr111221 11 103810072 to 103810083 11 - TSS region transcription start site region 111221
Tssr105359 11 103810197 to 103810204 7 + TSS region transcription start site region 105359
Tssr105360 11 103810223 to 103810233 10 + TSS region transcription start site region 105360
Cpgi3978 11 103811020 to 103811596 576 CpG island CpG island 3978
Nsf 11 103821782 to 103954056 132274 - protein coding gene N-ethylmaleimide sensitive fusion protein
Tssr111222 11 103822717 to 103822733 16 - TSS region transcription start site region 111222
Gm35365 11 103843848 to 103846116 2268 - lncRNA gene predicted gene, 35365
Gm35311 11 103857678 to 103858888 1210 - lncRNA gene predicted gene, 35311
Gm8738 11 103879915 to 103880243 328 - pseudogene predicted gene 8738
Tssr105361 11 103894107 to 103894150 43 + TSS region transcription start site region 105361
Tssr111223 11 103901115 to 103901120 5 - TSS region transcription start site region 111223
Tssr111224 11 103938211 to 103938217 6 - TSS region transcription start site region 111224
Cpgi3979 11 103953575 to 103954343 768 CpG island CpG island 3979
Tssr111225 11 103953997 to 103954014 17 - TSS region transcription start site region 111225
Tssr111226 11 103954015 to 103954034 19 - TSS region transcription start site region 111226
Tssr3692 11 103954044 to 103954046 2 - TSS region transcription start site region 3692
Tssr105362 11 103954126 to 103954141 15 + TSS region transcription start site region 105362
Tssr105363 11 103954147 to 103954175 28 + TSS region transcription start site region 105363
Tssr105364 11 103961816 to 103961848 32 + TSS region transcription start site region 105364
Tssr3693 11 103964043 to 103964054 11 - TSS region transcription start site region 3693
Cpgi3980 11 103966450 to 103967391 941 CpG island CpG island 3980
Tssr105365 11 103966716 to 103966790 74 + TSS region transcription start site region 105365
Arf2 11 103966739 to 103985337 18598 + protein coding gene ADP-ribosylation factor 2
Tssr105366 11 103979602 to 103979626 24 + TSS region transcription start site region 105366
Gm39399 11 103988930 to 103993252 4322 + lncRNA gene predicted gene, 39399
Gm35420 11 104030480 to 104033899 3419 + lncRNA gene predicted gene, 35420
Gm42092 11 104067087 to 104074172 7085 - lncRNA gene predicted gene, 42092
Cpgi3981 11 104072815 to 104073307 492 CpG island CpG island 3981
Cpgi3982 11 104131892 to 104134091 2199 CpG island CpG island 3982
Tssr105367 11 104132810 to 104132828 18 + TSS region transcription start site region 105367
Tssr105368 11 104132832 to 104132839 7 + TSS region transcription start site region 105368
Tssr105369 11 104132841 to 104132852 11 + TSS region transcription start site region 105369
Crhr1 11 104132855 to 104175523 42668 + protein coding gene corticotropin releasing hormone receptor 1
Tssr105370 11 104132864 to 104132876 12 + TSS region transcription start site region 105370
Gm35469 11 104145791 to 104159202 13411 - lncRNA gene predicted gene, 35469
Cpgi3983 11 104157883 to 104158139 256 CpG island CpG island 3983
Tssr3694 11 104160606 to 104160608 2 + TSS region transcription start site region 3694
Cpgi3984 11 104169762 to 104170292 530 CpG island CpG island 3984
Sppl2c 11 104186327 to 104191163 4836 + protein coding gene signal peptide peptidase 2C
Tssr105371 11 104186345 to 104186358 13 + TSS region transcription start site region 105371
Tssr105372 11 104191000 to 104191004 4 + TSS region transcription start site region 105372