Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:103457711-103937780

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrrc37a 11 103451955 to 103504597 52642 - protein coding gene leucine rich repeat containing 37A
Tssr111198 11 103504893 to 103504903 10 - TSS region transcription start site region 111198
Tssr111199 11 103504917 to 103504928 11 - TSS region transcription start site region 111199
Tssr111200 11 103504929 to 103504937 8 - TSS region transcription start site region 111200
Tssr111201 11 103504955 to 103504966 11 - TSS region transcription start site region 111201
4930467D19Rik 11 103505281 to 103506958 1677 unclassified gene RIKEN cDNA 4930467D19 gene
Gm884 11 103534577 to 103621140 86563 - protein coding gene predicted gene 884
Tssr111202 11 103567880 to 103567881 1 - TSS region transcription start site region 111202
Gm11643 11 103600242 to 103601105 863 - pseudogene predicted gene 11643
Tssr3691 11 103621413 to 103621416 3 - TSS region transcription start site region 3691
Tssr111203 11 103621422 to 103621442 20 - TSS region transcription start site region 111203
Cpgi3970 11 103627454 to 103627804 350 CpG island CpG island 3970
Tssr111204 11 103627642 to 103627656 14 - TSS region transcription start site region 111204
Tssr111205 11 103627657 to 103627669 12 - TSS region transcription start site region 111205
Gm39504 11 103629191 to 103629707 516 - protein coding gene predicted gene, 39504
Lyzl6 11 103631070 to 103638890 7820 - protein coding gene lysozyme-like 6
Tssr111206 11 103638839 to 103638850 11 - TSS region transcription start site region 111206
Tssr111207 11 103638852 to 103638861 9 - TSS region transcription start site region 111207
Tssr111208 11 103638862 to 103638893 31 - TSS region transcription start site region 111208
Tssr111209 11 103638899 to 103638906 7 - TSS region transcription start site region 111209
Tssr105346 11 103638919 to 103638931 12 + TSS region transcription start site region 105346
1700072I22Rik 11 103638936 to 103649013 10077 + lncRNA gene RIKEN cDNA 1700072I22 gene
Tssr105347 11 103638950 to 103638955 5 + TSS region transcription start site region 105347
Tssr105348 11 103638978 to 103638985 7 + TSS region transcription start site region 105348
Cpgi3971 11 103649117 to 103650678 1561 CpG island CpG island 3971
Tssr105349 11 103649498 to 103649521 23 + TSS region transcription start site region 105349
Tssr105350 11 103649530 to 103649557 27 + TSS region transcription start site region 105350
Tssr105351 11 103649569 to 103649574 5 + TSS region transcription start site region 105351
Rprml 11 103649570 to 103650579 1009 + protein coding gene reprimo-like
Tssr105352 11 103649578 to 103649585 7 + TSS region transcription start site region 105352
Tssr105353 11 103649640 to 103649649 9 + TSS region transcription start site region 105353
Tssr105354 11 103649700 to 103649714 14 + TSS region transcription start site region 105354
Tssr111210 11 103652662 to 103652666 4 - TSS region transcription start site region 111210
Gosr2 11 103676849 to 103697738 20889 - protein coding gene golgi SNAP receptor complex member 2
Tssr111211 11 103686760 to 103686770 10 - TSS region transcription start site region 111211
Tssr111212 11 103686837 to 103686848 11 - TSS region transcription start site region 111212
Tssr111213 11 103692445 to 103692453 8 - TSS region transcription start site region 111213
Tssr111214 11 103697061 to 103697063 2 - TSS region transcription start site region 111214
Tssr105355 11 103697321 to 103697340 19 + TSS region transcription start site region 105355
Cpgi3972 11 103697333 to 103698223 890 CpG island CpG island 3972
Tssr111215 11 103697661 to 103697718 57 - TSS region transcription start site region 111215
Tssr105356 11 103697711 to 103697780 69 + TSS region transcription start site region 105356
Tssr111216 11 103697723 to 103697734 11 - TSS region transcription start site region 111216
C130046K22Rik 11 103697724 to 103722832 25108 + lncRNA gene RIKEN cDNA C130046K22 gene
Tssr111217 11 103697779 to 103697790 11 - TSS region transcription start site region 111217
Tssr111218 11 103697937 to 103697948 11 - TSS region transcription start site region 111218
Tssr111219 11 103698036 to 103698045 9 - TSS region transcription start site region 111219
Gm11642 11 103723950 to 103724532 582 + unclassified non-coding RNA gene predicted gene 11642
Wnt9b 11 103727364 to 103749821 22457 - protein coding gene wingless-type MMTV integration site family, member 9B
Cpgi3973 11 103730580 to 103731197 617 CpG island CpG island 3973
Cpgi3974 11 103749297 to 103750352 1055 CpG island CpG island 3974
Tssr111220 11 103749815 to 103749829 14 - TSS region transcription start site region 111220
Cpgi3975 11 103773403 to 103774541 1138 CpG island CpG island 3975
Wnt3 11 103774150 to 103817957 43807 + protein coding gene wingless-type MMTV integration site family, member 3
Tssr105357 11 103774165 to 103774193 28 + TSS region transcription start site region 105357
Cpgi3976 11 103795156 to 103795837 681 CpG island CpG island 3976
Cpgi3977 11 103808942 to 103810872 1930 CpG island CpG island 3977
4930405A07Rik 11 103809394 to 103809997 603 unclassified gene RIKEN cDNA 4930405A07 gene
Tssr105358 11 103809728 to 103809730 2 + TSS region transcription start site region 105358
Tssr111221 11 103810072 to 103810083 11 - TSS region transcription start site region 111221
Tssr105359 11 103810197 to 103810204 7 + TSS region transcription start site region 105359
Tssr105360 11 103810223 to 103810233 10 + TSS region transcription start site region 105360
Cpgi3978 11 103811020 to 103811596 576 CpG island CpG island 3978
Nsf 11 103821782 to 103954056 132274 - protein coding gene N-ethylmaleimide sensitive fusion protein
Tssr111222 11 103822717 to 103822733 16 - TSS region transcription start site region 111222
Gm35365 11 103843848 to 103846116 2268 - lncRNA gene predicted gene, 35365
Gm35311 11 103857678 to 103858888 1210 - lncRNA gene predicted gene, 35311
Gm8738 11 103879915 to 103880243 328 - pseudogene predicted gene 8738
Tssr105361 11 103894107 to 103894150 43 + TSS region transcription start site region 105361
Tssr111223 11 103901115 to 103901120 5 - TSS region transcription start site region 111223