Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:103197642-104057656

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167 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fmnl1 11 103171107 to 103198901 27794 + protein coding gene formin-like 1
Tssr105333 11 103197650 to 103197661 11 + TSS region transcription start site region 105333
Tssr105334 11 103197677 to 103197687 10 + TSS region transcription start site region 105334
Cpgi3959 11 103198388 to 103200045 1657 CpG island CpG island 3959
1700023F06Rik 11 103198943 to 103208548 9605 - protein coding gene RIKEN cDNA 1700023F06 gene
Tssr111159 11 103199441 to 103199465 24 - TSS region transcription start site region 111159
Tssr111160 11 103199478 to 103199503 25 - TSS region transcription start site region 111160
Tssr111161 11 103199712 to 103199747 35 - TSS region transcription start site region 111161
Tssr111162 11 103201763 to 103201786 23 - TSS region transcription start site region 111162
Spata32 11 103208127 to 103218432 10305 - protein coding gene spermatogenesis associated 32
Tssr111163 11 103208531 to 103208534 3 - TSS region transcription start site region 111163
Tssr111164 11 103208542 to 103208555 13 - TSS region transcription start site region 111164
Tssr111165 11 103208565 to 103208566 1 - TSS region transcription start site region 111165
Tssr105335 11 103208652 to 103208663 11 + TSS region transcription start site region 105335
Cpgi3960 11 103217710 to 103218520 810 CpG island CpG island 3960
Tssr111166 11 103218421 to 103218438 17 - TSS region transcription start site region 111166
Tssr111167 11 103218450 to 103218461 11 - TSS region transcription start site region 111167
Gm34823 11 103218593 to 103237568 18975 + lncRNA gene predicted gene, 34823
Map3k14 11 103219764 to 103267401 47637 - protein coding gene mitogen-activated protein kinase kinase kinase 14
Gm39396 11 103237581 to 103238761 1180 + lncRNA gene predicted gene, 39396
Tssr111168 11 103237875 to 103237912 37 - TSS region transcription start site region 111168
Tssr111169 11 103239868 to 103239875 7 - TSS region transcription start site region 111169
Tssr3689 11 103262395 to 103262420 25 - TSS region transcription start site region 3689
Cpgi3961 11 103264449 to 103264760 311 CpG island CpG island 3961
1700028N14Rik 11 103264860 to 103267745 2885 - unclassified non-coding RNA gene RIKEN cDNA 1700028N14 gene
Tssr111170 11 103265290 to 103265297 7 - TSS region transcription start site region 111170
Tssr105336 11 103266198 to 103266204 6 + TSS region transcription start site region 105336
Cpgi3962 11 103266836 to 103267960 1124 CpG island CpG island 3962
Tssr111171 11 103267351 to 103267362 11 - TSS region transcription start site region 111171
Tssr111172 11 103267364 to 103267391 27 - TSS region transcription start site region 111172
Tssr111173 11 103267393 to 103267404 11 - TSS region transcription start site region 111173
Tssr111174 11 103267405 to 103267414 9 - TSS region transcription start site region 111174
Tssr105337 11 103299337 to 103299346 9 + TSS region transcription start site region 105337
Cpgi3963 11 103312025 to 103312269 244 CpG island CpG island 3963
Arhgap27 11 103331497 to 103363692 32195 - protein coding gene Rho GTPase activating protein 27
Cpgi3964 11 103332769 to 103334444 1675 CpG island CpG island 3964
Tssr111175 11 103335308 to 103335324 16 - TSS region transcription start site region 111175
Tssr111176 11 103335328 to 103335334 6 - TSS region transcription start site region 111176
Cpgi3965 11 103340140 to 103340476 336 CpG island CpG island 3965
Tssr111177 11 103344651 to 103344719 68 - TSS region transcription start site region 111177
Tssr105338 11 103344731 to 103344759 28 + TSS region transcription start site region 105338
Arhgap27os3 11 103344753 to 103350124 5371 + antisense lncRNA gene Rho GTPase activating protein 27, opposite strand 3
Tssr105339 11 103344765 to 103344812 47 + TSS region transcription start site region 105339
Tssr105340 11 103347164 to 103347195 31 + TSS region transcription start site region 105340
Tssr105341 11 103355694 to 103355707 13 + TSS region transcription start site region 105341
Arhgap27os2 11 103355701 to 103361092 5391 + antisense lncRNA gene Rho GTPase activating protein 27, opposite strand 2
Tssr111178 11 103356324 to 103356385 61 - TSS region transcription start site region 111178
Cpgi3966 11 103359077 to 103359538 461 CpG island CpG island 3966
Cpgi3967 11 103360018 to 103361445 1427 CpG island CpG island 3967
Tssr111179 11 103360364 to 103360402 38 - TSS region transcription start site region 111179
Tssr105342 11 103360467 to 103360512 45 + TSS region transcription start site region 105342
Cpgi3968 11 103362353 to 103363680 1327 CpG island CpG island 3968
Arhgap27os1 11 103363213 to 103364651 1438 + antisense lncRNA gene Rho GTPase activating protein 27, opposite strand 1
Tssr111180 11 103363341 to 103363406 65 - TSS region transcription start site region 111180
Tssr111181 11 103363431 to 103363458 27 - TSS region transcription start site region 111181
Tssr111182 11 103363628 to 103363639 11 - TSS region transcription start site region 111182
Tssr3690 11 103363644 to 103363659 15 - TSS region transcription start site region 3690
Tssr111183 11 103363671 to 103363685 14 - TSS region transcription start site region 111183
Plekhm1 11 103365092 to 103412664 47572 - protein coding gene pleckstrin homology domain containing, family M (with RUN domain) member 1
Tssr111184 11 103374051 to 103374063 12 - TSS region transcription start site region 111184
Tssr111185 11 103374084 to 103374100 16 - TSS region transcription start site region 111185
Tssr111186 11 103374104 to 103374120 16 - TSS region transcription start site region 111186
Tssr111187 11 103375962 to 103375969 7 - TSS region transcription start site region 111187
D11Mit360 11 103383166 to 103383289 123 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 360
Cia40 11 103383166 to 115130618 11747452 QTL collagen induced arthritis QTL 40
Motr1 11 103383289 to 87800372 -15582917 QTL modifier of tubby retinal degeneration 1
Tssr111188 11 103395122 to 103395135 13 - TSS region transcription start site region 111188
Tssr111189 11 103395256 to 103395268 12 - TSS region transcription start site region 111189
Tssr111190 11 103403855 to 103403866 11 - TSS region transcription start site region 111190
Tssr111191 11 103403884 to 103403918 34 - TSS region transcription start site region 111191
Tssr111192 11 103403951 to 103403958 7 - TSS region transcription start site region 111192
Tssr111193 11 103404020 to 103404029 9 - TSS region transcription start site region 111193
Cpgi3969 11 103412054 to 103413088 1034 CpG island CpG island 3969
Tssr111194 11 103412654 to 103412666 12 - TSS region transcription start site region 111194
Tssr111195 11 103412668 to 103412711 43 - TSS region transcription start site region 111195
Tssr105343 11 103412828 to 103412840 12 + TSS region transcription start site region 105343
Tssr111196 11 103413070 to 103413093 23 - TSS region transcription start site region 111196
Gm39397 11 103421732 to 103422042 310 + lincRNA gene predicted gene, 39397
Tssr105344 11 103425240 to 103425270 30 + TSS region transcription start site region 105344
4930445B03Rik 11 103428279 to 103429493 1214 unclassified gene RIKEN cDNA 4930445B03 gene
Tssr111197 11 103443841 to 103443853 12 - TSS region transcription start site region 111197
Tssr105345 11 103445546 to 103445550 4 + TSS region transcription start site region 105345
Lrrc37a 11 103451955 to 103504597 52642 - protein coding gene leucine rich repeat containing 37A
Tssr111198 11 103504893 to 103504903 10 - TSS region transcription start site region 111198
Tssr111199 11 103504917 to 103504928 11 - TSS region transcription start site region 111199
Tssr111200 11 103504929 to 103504937 8 - TSS region transcription start site region 111200
Tssr111201 11 103504955 to 103504966 11 - TSS region transcription start site region 111201
4930467D19Rik 11 103505281 to 103506958 1677 unclassified gene RIKEN cDNA 4930467D19 gene
Gm884 11 103534577 to 103621140 86563 - protein coding gene predicted gene 884
Tssr111202 11 103567880 to 103567881 1 - TSS region transcription start site region 111202
Gm11643 11 103600242 to 103601105 863 - pseudogene predicted gene 11643
Tssr3691 11 103621413 to 103621416 3 - TSS region transcription start site region 3691
Tssr111203 11 103621422 to 103621442 20 - TSS region transcription start site region 111203
Cpgi3970 11 103627454 to 103627804 350 CpG island CpG island 3970
Tssr111204 11 103627642 to 103627656 14 - TSS region transcription start site region 111204
Tssr111205 11 103627657 to 103627669 12 - TSS region transcription start site region 111205
Gm39504 11 103629191 to 103629707 516 - protein coding gene predicted gene, 39504
Lyzl6 11 103631070 to 103638890 7820 - protein coding gene lysozyme-like 6
Tssr111206 11 103638839 to 103638850 11 - TSS region transcription start site region 111206
Tssr111207 11 103638852 to 103638861 9 - TSS region transcription start site region 111207
Tssr111208 11 103638862 to 103638893 31 - TSS region transcription start site region 111208
Tssr111209 11 103638899 to 103638906 7 - TSS region transcription start site region 111209
Tssr105346 11 103638919 to 103638931 12 + TSS region transcription start site region 105346
1700072I22Rik 11 103638936 to 103649013 10077 + lncRNA gene RIKEN cDNA 1700072I22 gene
Tssr105347 11 103638950 to 103638955 5 + TSS region transcription start site region 105347
Tssr105348 11 103638978 to 103638985 7 + TSS region transcription start site region 105348
Cpgi3971 11 103649117 to 103650678 1561 CpG island CpG island 3971
Tssr105349 11 103649498 to 103649521 23 + TSS region transcription start site region 105349
Tssr105350 11 103649530 to 103649557 27 + TSS region transcription start site region 105350
Tssr105351 11 103649569 to 103649574 5 + TSS region transcription start site region 105351
Rprml 11 103649570 to 103650579 1009 + protein coding gene reprimo-like
Tssr105352 11 103649578 to 103649585 7 + TSS region transcription start site region 105352
Tssr105353 11 103649640 to 103649649 9 + TSS region transcription start site region 105353
Tssr105354 11 103649700 to 103649714 14 + TSS region transcription start site region 105354
Tssr111210 11 103652662 to 103652666 4 - TSS region transcription start site region 111210
Gosr2 11 103676849 to 103697738 20889 - protein coding gene golgi SNAP receptor complex member 2
Tssr111211 11 103686760 to 103686770 10 - TSS region transcription start site region 111211
Tssr111212 11 103686837 to 103686848 11 - TSS region transcription start site region 111212
Tssr111213 11 103692445 to 103692453 8 - TSS region transcription start site region 111213
Tssr111214 11 103697061 to 103697063 2 - TSS region transcription start site region 111214
Tssr105355 11 103697321 to 103697340 19 + TSS region transcription start site region 105355
Cpgi3972 11 103697333 to 103698223 890 CpG island CpG island 3972
Tssr111215 11 103697661 to 103697718 57 - TSS region transcription start site region 111215
Tssr105356 11 103697711 to 103697780 69 + TSS region transcription start site region 105356
Tssr111216 11 103697723 to 103697734 11 - TSS region transcription start site region 111216
C130046K22Rik 11 103697724 to 103722832 25108 + lncRNA gene RIKEN cDNA C130046K22 gene
Tssr111217 11 103697779 to 103697790 11 - TSS region transcription start site region 111217
Tssr111218 11 103697937 to 103697948 11 - TSS region transcription start site region 111218
Tssr111219 11 103698036 to 103698045 9 - TSS region transcription start site region 111219
Gm11642 11 103723950 to 103724532 582 + unclassified non-coding RNA gene predicted gene 11642
Wnt9b 11 103727364 to 103749821 22457 - protein coding gene wingless-type MMTV integration site family, member 9B
Cpgi3973 11 103730580 to 103731197 617 CpG island CpG island 3973
Cpgi3974 11 103749297 to 103750352 1055 CpG island CpG island 3974
Tssr111220 11 103749815 to 103749829 14 - TSS region transcription start site region 111220
Cpgi3975 11 103773403 to 103774541 1138 CpG island CpG island 3975
Wnt3 11 103774150 to 103817957 43807 + protein coding gene wingless-type MMTV integration site family, member 3
Tssr105357 11 103774165 to 103774193 28 + TSS region transcription start site region 105357
Cpgi3976 11 103795156 to 103795837 681 CpG island CpG island 3976
Cpgi3977 11 103808942 to 103810872 1930 CpG island CpG island 3977
4930405A07Rik 11 103809394 to 103809997 603 unclassified gene RIKEN cDNA 4930405A07 gene
Tssr105358 11 103809728 to 103809730 2 + TSS region transcription start site region 105358
Tssr111221 11 103810072 to 103810083 11 - TSS region transcription start site region 111221
Tssr105359 11 103810197 to 103810204 7 + TSS region transcription start site region 105359
Tssr105360 11 103810223 to 103810233 10 + TSS region transcription start site region 105360
Cpgi3978 11 103811020 to 103811596 576 CpG island CpG island 3978
Nsf 11 103821782 to 103954056 132274 - protein coding gene N-ethylmaleimide sensitive fusion protein
Tssr111222 11 103822717 to 103822733 16 - TSS region transcription start site region 111222
Gm35365 11 103843848 to 103846116 2268 - lncRNA gene predicted gene, 35365
Gm35311 11 103857678 to 103858888 1210 - lncRNA gene predicted gene, 35311
Gm8738 11 103879915 to 103880243 328 - pseudogene predicted gene 8738
Tssr105361 11 103894107 to 103894150 43 + TSS region transcription start site region 105361
Tssr111223 11 103901115 to 103901120 5 - TSS region transcription start site region 111223
Tssr111224 11 103938211 to 103938217 6 - TSS region transcription start site region 111224
Cpgi3979 11 103953575 to 103954343 768 CpG island CpG island 3979
Tssr111225 11 103953997 to 103954014 17 - TSS region transcription start site region 111225
Tssr111226 11 103954015 to 103954034 19 - TSS region transcription start site region 111226
Tssr3692 11 103954044 to 103954046 2 - TSS region transcription start site region 3692
Tssr105362 11 103954126 to 103954141 15 + TSS region transcription start site region 105362
Tssr105363 11 103954147 to 103954175 28 + TSS region transcription start site region 105363
Tssr105364 11 103961816 to 103961848 32 + TSS region transcription start site region 105364
Tssr3693 11 103964043 to 103964054 11 - TSS region transcription start site region 3693
Cpgi3980 11 103966450 to 103967391 941 CpG island CpG island 3980
Tssr105365 11 103966716 to 103966790 74 + TSS region transcription start site region 105365
Arf2 11 103966739 to 103985337 18598 + protein coding gene ADP-ribosylation factor 2
Tssr105366 11 103979602 to 103979626 24 + TSS region transcription start site region 105366
Gm39399 11 103988930 to 103993252 4322 + lncRNA gene predicted gene, 39399
Gm35420 11 104030480 to 104033899 3419 + lncRNA gene predicted gene, 35420