Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:103194337-103404346

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fmnl1 11 103171107 to 103198901 27794 + protein coding gene formin-like 1
Tssr105333 11 103197650 to 103197661 11 + TSS region transcription start site region 105333
Tssr105334 11 103197677 to 103197687 10 + TSS region transcription start site region 105334
Cpgi3959 11 103198388 to 103200045 1657 CpG island CpG island 3959
1700023F06Rik 11 103198943 to 103208548 9605 - protein coding gene RIKEN cDNA 1700023F06 gene
Tssr111159 11 103199441 to 103199465 24 - TSS region transcription start site region 111159
Tssr111160 11 103199478 to 103199503 25 - TSS region transcription start site region 111160
Tssr111161 11 103199712 to 103199747 35 - TSS region transcription start site region 111161
Tssr111162 11 103201763 to 103201786 23 - TSS region transcription start site region 111162
Spata32 11 103208127 to 103218432 10305 - protein coding gene spermatogenesis associated 32
Tssr111163 11 103208531 to 103208534 3 - TSS region transcription start site region 111163
Tssr111164 11 103208542 to 103208555 13 - TSS region transcription start site region 111164
Tssr111165 11 103208565 to 103208566 1 - TSS region transcription start site region 111165
Tssr105335 11 103208652 to 103208663 11 + TSS region transcription start site region 105335
Cpgi3960 11 103217710 to 103218520 810 CpG island CpG island 3960
Tssr111166 11 103218421 to 103218438 17 - TSS region transcription start site region 111166
Tssr111167 11 103218450 to 103218461 11 - TSS region transcription start site region 111167
Gm34823 11 103218593 to 103237568 18975 + lncRNA gene predicted gene, 34823
Map3k14 11 103219764 to 103267401 47637 - protein coding gene mitogen-activated protein kinase kinase kinase 14
Gm39396 11 103237581 to 103238761 1180 + lncRNA gene predicted gene, 39396
Tssr111168 11 103237875 to 103237912 37 - TSS region transcription start site region 111168
Tssr111169 11 103239868 to 103239875 7 - TSS region transcription start site region 111169
Tssr3689 11 103262395 to 103262420 25 - TSS region transcription start site region 3689
Cpgi3961 11 103264449 to 103264760 311 CpG island CpG island 3961
1700028N14Rik 11 103264860 to 103267745 2885 - unclassified non-coding RNA gene RIKEN cDNA 1700028N14 gene
Tssr111170 11 103265290 to 103265297 7 - TSS region transcription start site region 111170
Tssr105336 11 103266198 to 103266204 6 + TSS region transcription start site region 105336
Cpgi3962 11 103266836 to 103267960 1124 CpG island CpG island 3962
Tssr111171 11 103267351 to 103267362 11 - TSS region transcription start site region 111171
Tssr111172 11 103267364 to 103267391 27 - TSS region transcription start site region 111172
Tssr111173 11 103267393 to 103267404 11 - TSS region transcription start site region 111173
Tssr111174 11 103267405 to 103267414 9 - TSS region transcription start site region 111174
Tssr105337 11 103299337 to 103299346 9 + TSS region transcription start site region 105337
Cpgi3963 11 103312025 to 103312269 244 CpG island CpG island 3963
Arhgap27 11 103331497 to 103363692 32195 - protein coding gene Rho GTPase activating protein 27
Cpgi3964 11 103332769 to 103334444 1675 CpG island CpG island 3964
Tssr111175 11 103335308 to 103335324 16 - TSS region transcription start site region 111175
Tssr111176 11 103335328 to 103335334 6 - TSS region transcription start site region 111176
Cpgi3965 11 103340140 to 103340476 336 CpG island CpG island 3965
Tssr111177 11 103344651 to 103344719 68 - TSS region transcription start site region 111177
Tssr105338 11 103344731 to 103344759 28 + TSS region transcription start site region 105338
Arhgap27os3 11 103344753 to 103350124 5371 + antisense lncRNA gene Rho GTPase activating protein 27, opposite strand 3
Tssr105339 11 103344765 to 103344812 47 + TSS region transcription start site region 105339
Tssr105340 11 103347164 to 103347195 31 + TSS region transcription start site region 105340
Tssr105341 11 103355694 to 103355707 13 + TSS region transcription start site region 105341
Arhgap27os2 11 103355701 to 103361092 5391 + antisense lncRNA gene Rho GTPase activating protein 27, opposite strand 2
Tssr111178 11 103356324 to 103356385 61 - TSS region transcription start site region 111178
Cpgi3966 11 103359077 to 103359538 461 CpG island CpG island 3966
Cpgi3967 11 103360018 to 103361445 1427 CpG island CpG island 3967
Tssr111179 11 103360364 to 103360402 38 - TSS region transcription start site region 111179
Tssr105342 11 103360467 to 103360512 45 + TSS region transcription start site region 105342
Cpgi3968 11 103362353 to 103363680 1327 CpG island CpG island 3968
Arhgap27os1 11 103363213 to 103364651 1438 + antisense lncRNA gene Rho GTPase activating protein 27, opposite strand 1
Tssr111180 11 103363341 to 103363406 65 - TSS region transcription start site region 111180
Tssr111181 11 103363431 to 103363458 27 - TSS region transcription start site region 111181
Tssr111182 11 103363628 to 103363639 11 - TSS region transcription start site region 111182
Tssr3690 11 103363644 to 103363659 15 - TSS region transcription start site region 3690
Tssr111183 11 103363671 to 103363685 14 - TSS region transcription start site region 111183
Plekhm1 11 103365092 to 103412664 47572 - protein coding gene pleckstrin homology domain containing, family M (with RUN domain) member 1
Tssr111184 11 103374051 to 103374063 12 - TSS region transcription start site region 111184
Tssr111185 11 103374084 to 103374100 16 - TSS region transcription start site region 111185
Tssr111186 11 103374104 to 103374120 16 - TSS region transcription start site region 111186
Tssr111187 11 103375962 to 103375969 7 - TSS region transcription start site region 111187
D11Mit360 11 103383166 to 103383289 123 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 360
Cia40 11 103383166 to 115130618 11747452 QTL collagen induced arthritis QTL 40
Motr1 11 103383289 to 87800372 -15582917 QTL modifier of tubby retinal degeneration 1
Tssr111188 11 103395122 to 103395135 13 - TSS region transcription start site region 111188
Tssr111189 11 103395256 to 103395268 12 - TSS region transcription start site region 111189
Tssr111190 11 103403855 to 103403866 11 - TSS region transcription start site region 111190
Tssr111191 11 103403884 to 103403918 34 - TSS region transcription start site region 111191
Tssr111192 11 103403951 to 103403958 7 - TSS region transcription start site region 111192
Tssr111193 11 103404020 to 103404029 9 - TSS region transcription start site region 111193