Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:103170290-103360297

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr105316 11 103170416 to 103170427 11 + TSS region transcription start site region 105316
Tssr105317 11 103170493 to 103170496 3 + TSS region transcription start site region 105317
Cpgi3957 11 103170547 to 103171793 1246 CpG island CpG island 3957
Tssr105318 11 103170727 to 103170740 13 + TSS region transcription start site region 105318
Tssr105319 11 103170757 to 103170830 73 + TSS region transcription start site region 105319
Tssr105320 11 103170846 to 103170861 15 + TSS region transcription start site region 105320
Tssr105321 11 103170963 to 103170978 15 + TSS region transcription start site region 105321
Tssr105322 11 103170992 to 103171009 17 + TSS region transcription start site region 105322
Tssr105323 11 103171081 to 103171122 41 + TSS region transcription start site region 105323
Fmnl1 11 103171107 to 103198901 27794 + protein coding gene formin-like 1
Tssr111157 11 103174896 to 103174907 11 - TSS region transcription start site region 111157
Tssr105324 11 103181698 to 103181702 4 + TSS region transcription start site region 105324
Gm20511 11 103190710 to 103192896 2186 - antisense lncRNA gene predicted gene 20511
Cpgi3958 11 103192358 to 103193428 1070 CpG island CpG island 3958
Tssr105325 11 103192397 to 103192435 38 + TSS region transcription start site region 105325
Tssr105326 11 103192617 to 103192690 73 + TSS region transcription start site region 105326
Tssr105327 11 103192694 to 103192704 10 + TSS region transcription start site region 105327
Tssr105328 11 103192705 to 103192712 7 + TSS region transcription start site region 105328
Tssr105329 11 103193072 to 103193084 12 + TSS region transcription start site region 105329
Tssr105330 11 103193100 to 103193113 13 + TSS region transcription start site region 105330
Tssr105331 11 103193131 to 103193142 11 + TSS region transcription start site region 105331
Tssr111158 11 103193524 to 103193540 16 - TSS region transcription start site region 111158
Tssr105332 11 103193605 to 103193651 46 + TSS region transcription start site region 105332
Tssr105333 11 103197650 to 103197661 11 + TSS region transcription start site region 105333
Tssr105334 11 103197677 to 103197687 10 + TSS region transcription start site region 105334
Cpgi3959 11 103198388 to 103200045 1657 CpG island CpG island 3959
1700023F06Rik 11 103198943 to 103208548 9605 - protein coding gene RIKEN cDNA 1700023F06 gene
Tssr111159 11 103199441 to 103199465 24 - TSS region transcription start site region 111159
Tssr111160 11 103199478 to 103199503 25 - TSS region transcription start site region 111160
Tssr111161 11 103199712 to 103199747 35 - TSS region transcription start site region 111161
Tssr111162 11 103201763 to 103201786 23 - TSS region transcription start site region 111162
Spata32 11 103208127 to 103218432 10305 - protein coding gene spermatogenesis associated 32
Tssr111163 11 103208531 to 103208534 3 - TSS region transcription start site region 111163
Tssr111164 11 103208542 to 103208555 13 - TSS region transcription start site region 111164
Tssr111165 11 103208565 to 103208566 1 - TSS region transcription start site region 111165
Tssr105335 11 103208652 to 103208663 11 + TSS region transcription start site region 105335
Cpgi3960 11 103217710 to 103218520 810 CpG island CpG island 3960
Tssr111166 11 103218421 to 103218438 17 - TSS region transcription start site region 111166
Tssr111167 11 103218450 to 103218461 11 - TSS region transcription start site region 111167
Gm34823 11 103218593 to 103237568 18975 + lncRNA gene predicted gene, 34823
Map3k14 11 103219764 to 103267401 47637 - protein coding gene mitogen-activated protein kinase kinase kinase 14
Gm39396 11 103237581 to 103238761 1180 + lncRNA gene predicted gene, 39396
Tssr111168 11 103237875 to 103237912 37 - TSS region transcription start site region 111168
Tssr111169 11 103239868 to 103239875 7 - TSS region transcription start site region 111169
Tssr3689 11 103262395 to 103262420 25 - TSS region transcription start site region 3689
Cpgi3961 11 103264449 to 103264760 311 CpG island CpG island 3961
1700028N14Rik 11 103264860 to 103267745 2885 - unclassified non-coding RNA gene RIKEN cDNA 1700028N14 gene
Tssr111170 11 103265290 to 103265297 7 - TSS region transcription start site region 111170
Tssr105336 11 103266198 to 103266204 6 + TSS region transcription start site region 105336
Cpgi3962 11 103266836 to 103267960 1124 CpG island CpG island 3962
Tssr111171 11 103267351 to 103267362 11 - TSS region transcription start site region 111171
Tssr111172 11 103267364 to 103267391 27 - TSS region transcription start site region 111172
Tssr111173 11 103267393 to 103267404 11 - TSS region transcription start site region 111173
Tssr111174 11 103267405 to 103267414 9 - TSS region transcription start site region 111174
Tssr105337 11 103299337 to 103299346 9 + TSS region transcription start site region 105337
Cpgi3963 11 103312025 to 103312269 244 CpG island CpG island 3963
Arhgap27 11 103331497 to 103363692 32195 - protein coding gene Rho GTPase activating protein 27
Cpgi3964 11 103332769 to 103334444 1675 CpG island CpG island 3964
Tssr111175 11 103335308 to 103335324 16 - TSS region transcription start site region 111175
Tssr111176 11 103335328 to 103335334 6 - TSS region transcription start site region 111176
Cpgi3965 11 103340140 to 103340476 336 CpG island CpG island 3965
Tssr111177 11 103344651 to 103344719 68 - TSS region transcription start site region 111177
Tssr105338 11 103344731 to 103344759 28 + TSS region transcription start site region 105338
Arhgap27os3 11 103344753 to 103350124 5371 + antisense lncRNA gene Rho GTPase activating protein 27, opposite strand 3
Tssr105339 11 103344765 to 103344812 47 + TSS region transcription start site region 105339
Tssr105340 11 103347164 to 103347195 31 + TSS region transcription start site region 105340
Tssr105341 11 103355694 to 103355707 13 + TSS region transcription start site region 105341
Arhgap27os2 11 103355701 to 103361092 5391 + antisense lncRNA gene Rho GTPase activating protein 27, opposite strand 2
Tssr111178 11 103356324 to 103356385 61 - TSS region transcription start site region 111178
Cpgi3966 11 103359077 to 103359538 461 CpG island CpG island 3966
Cpgi3967 11 103360018 to 103361445 1427 CpG island CpG island 3967