Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:103082875-103392912

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119 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plcd3 11 103070304 to 103101658 31354 - protein coding gene phospholipase C, delta 3
Cpgi3951 11 103100995 to 103103423 2428 CpG island CpG island 3951
Tssr111152 11 103101588 to 103101595 7 - TSS region transcription start site region 111152
Tssr111153 11 103101609 to 103101662 53 - TSS region transcription start site region 111153
Acbd4 11 103101688 to 103112199 10511 + protein coding gene acyl-Coenzyme A binding domain containing 4
Tssr105303 11 103101689 to 103101726 37 + TSS region transcription start site region 105303
Tssr105304 11 103101735 to 103101749 14 + TSS region transcription start site region 105304
Tssr105305 11 103103015 to 103103026 11 + TSS region transcription start site region 105305
Tssr105306 11 103103051 to 103103115 64 + TSS region transcription start site region 105306
Tssr105307 11 103104755 to 103104768 13 + TSS region transcription start site region 105307
Tssr105308 11 103104771 to 103104791 20 + TSS region transcription start site region 105308
Tssr105309 11 103104794 to 103104811 17 + TSS region transcription start site region 105309
Tssr3688 11 103104816 to 103104826 10 + TSS region transcription start site region 3688
Cpgi3952 11 103112060 to 103112393 333 CpG island CpG island 3952
Cpgi3953 11 103115127 to 103115458 331 CpG island CpG island 3953
Tssr111154 11 103115398 to 103115423 25 - TSS region transcription start site region 111154
Cpgi3954 11 103115929 to 103118030 2101 CpG island CpG island 3954
Tssr105310 11 103116228 to 103116235 7 + TSS region transcription start site region 105310
Hexim1 11 103116325 to 103119725 3400 + protein coding gene hexamethylene bis-acetamide inducible 1
C130045F17Rik 11 103125187 to 103131038 5851 unclassified gene RIKEN cDNA C130045F17 gene
Tssr111155 11 103131812 to 103131817 5 - TSS region transcription start site region 111155
Cpgi3955 11 103132151 to 103133343 1192 CpG island CpG island 3955
Hexim2 11 103132429 to 103139876 7447 + protein coding gene hexamethylene bis-acetamide inducible 2
Tssr111156 11 103132853 to 103132918 65 - TSS region transcription start site region 111156
Tssr105311 11 103133171 to 103133180 9 + TSS region transcription start site region 105311
Tssr105312 11 103133303 to 103133332 29 + TSS region transcription start site region 105312
Tssr105313 11 103133333 to 103133359 26 + TSS region transcription start site region 105313
Tssr105314 11 103133363 to 103133376 13 + TSS region transcription start site region 105314
Tssr105315 11 103134031 to 103134045 14 + TSS region transcription start site region 105315
D11Mit331 11 103139751 to 103139865 114 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 331
Cpgi3956 11 103159076 to 103159376 300 CpG island CpG island 3956
Tssr105316 11 103170416 to 103170427 11 + TSS region transcription start site region 105316
Tssr105317 11 103170493 to 103170496 3 + TSS region transcription start site region 105317
Cpgi3957 11 103170547 to 103171793 1246 CpG island CpG island 3957
Tssr105318 11 103170727 to 103170740 13 + TSS region transcription start site region 105318
Tssr105319 11 103170757 to 103170830 73 + TSS region transcription start site region 105319
Tssr105320 11 103170846 to 103170861 15 + TSS region transcription start site region 105320
Tssr105321 11 103170963 to 103170978 15 + TSS region transcription start site region 105321
Tssr105322 11 103170992 to 103171009 17 + TSS region transcription start site region 105322
Tssr105323 11 103171081 to 103171122 41 + TSS region transcription start site region 105323
Fmnl1 11 103171107 to 103198901 27794 + protein coding gene formin-like 1
Tssr111157 11 103174896 to 103174907 11 - TSS region transcription start site region 111157
Tssr105324 11 103181698 to 103181702 4 + TSS region transcription start site region 105324
Gm20511 11 103190710 to 103192896 2186 - antisense lncRNA gene predicted gene 20511
Cpgi3958 11 103192358 to 103193428 1070 CpG island CpG island 3958
Tssr105325 11 103192397 to 103192435 38 + TSS region transcription start site region 105325
Tssr105326 11 103192617 to 103192690 73 + TSS region transcription start site region 105326
Tssr105327 11 103192694 to 103192704 10 + TSS region transcription start site region 105327
Tssr105328 11 103192705 to 103192712 7 + TSS region transcription start site region 105328
Tssr105329 11 103193072 to 103193084 12 + TSS region transcription start site region 105329
Tssr105330 11 103193100 to 103193113 13 + TSS region transcription start site region 105330
Tssr105331 11 103193131 to 103193142 11 + TSS region transcription start site region 105331
Tssr111158 11 103193524 to 103193540 16 - TSS region transcription start site region 111158
Tssr105332 11 103193605 to 103193651 46 + TSS region transcription start site region 105332
Tssr105333 11 103197650 to 103197661 11 + TSS region transcription start site region 105333
Tssr105334 11 103197677 to 103197687 10 + TSS region transcription start site region 105334
Cpgi3959 11 103198388 to 103200045 1657 CpG island CpG island 3959
1700023F06Rik 11 103198943 to 103208548 9605 - protein coding gene RIKEN cDNA 1700023F06 gene
Tssr111159 11 103199441 to 103199465 24 - TSS region transcription start site region 111159
Tssr111160 11 103199478 to 103199503 25 - TSS region transcription start site region 111160
Tssr111161 11 103199712 to 103199747 35 - TSS region transcription start site region 111161
Tssr111162 11 103201763 to 103201786 23 - TSS region transcription start site region 111162
Spata32 11 103208127 to 103218432 10305 - protein coding gene spermatogenesis associated 32
Tssr111163 11 103208531 to 103208534 3 - TSS region transcription start site region 111163
Tssr111164 11 103208542 to 103208555 13 - TSS region transcription start site region 111164
Tssr111165 11 103208565 to 103208566 1 - TSS region transcription start site region 111165
Tssr105335 11 103208652 to 103208663 11 + TSS region transcription start site region 105335
Cpgi3960 11 103217710 to 103218520 810 CpG island CpG island 3960
Tssr111166 11 103218421 to 103218438 17 - TSS region transcription start site region 111166
Tssr111167 11 103218450 to 103218461 11 - TSS region transcription start site region 111167
Gm34823 11 103218593 to 103237568 18975 + lncRNA gene predicted gene, 34823
Map3k14 11 103219764 to 103267401 47637 - protein coding gene mitogen-activated protein kinase kinase kinase 14
Gm39396 11 103237581 to 103238761 1180 + lncRNA gene predicted gene, 39396
Tssr111168 11 103237875 to 103237912 37 - TSS region transcription start site region 111168
Tssr111169 11 103239868 to 103239875 7 - TSS region transcription start site region 111169
Tssr3689 11 103262395 to 103262420 25 - TSS region transcription start site region 3689
Cpgi3961 11 103264449 to 103264760 311 CpG island CpG island 3961
1700028N14Rik 11 103264860 to 103267745 2885 - unclassified non-coding RNA gene RIKEN cDNA 1700028N14 gene
Tssr111170 11 103265290 to 103265297 7 - TSS region transcription start site region 111170
Tssr105336 11 103266198 to 103266204 6 + TSS region transcription start site region 105336
Cpgi3962 11 103266836 to 103267960 1124 CpG island CpG island 3962
Tssr111171 11 103267351 to 103267362 11 - TSS region transcription start site region 111171
Tssr111172 11 103267364 to 103267391 27 - TSS region transcription start site region 111172
Tssr111173 11 103267393 to 103267404 11 - TSS region transcription start site region 111173
Tssr111174 11 103267405 to 103267414 9 - TSS region transcription start site region 111174
Tssr105337 11 103299337 to 103299346 9 + TSS region transcription start site region 105337
Cpgi3963 11 103312025 to 103312269 244 CpG island CpG island 3963
Arhgap27 11 103331497 to 103363692 32195 - protein coding gene Rho GTPase activating protein 27
Cpgi3964 11 103332769 to 103334444 1675 CpG island CpG island 3964
Tssr111175 11 103335308 to 103335324 16 - TSS region transcription start site region 111175
Tssr111176 11 103335328 to 103335334 6 - TSS region transcription start site region 111176
Cpgi3965 11 103340140 to 103340476 336 CpG island CpG island 3965
Tssr111177 11 103344651 to 103344719 68 - TSS region transcription start site region 111177
Tssr105338 11 103344731 to 103344759 28 + TSS region transcription start site region 105338
Arhgap27os3 11 103344753 to 103350124 5371 + antisense lncRNA gene Rho GTPase activating protein 27, opposite strand 3
Tssr105339 11 103344765 to 103344812 47 + TSS region transcription start site region 105339
Tssr105340 11 103347164 to 103347195 31 + TSS region transcription start site region 105340
Tssr105341 11 103355694 to 103355707 13 + TSS region transcription start site region 105341
Arhgap27os2 11 103355701 to 103361092 5391 + antisense lncRNA gene Rho GTPase activating protein 27, opposite strand 2
Tssr111178 11 103356324 to 103356385 61 - TSS region transcription start site region 111178
Cpgi3966 11 103359077 to 103359538 461 CpG island CpG island 3966
Cpgi3967 11 103360018 to 103361445 1427 CpG island CpG island 3967
Tssr111179 11 103360364 to 103360402 38 - TSS region transcription start site region 111179
Tssr105342 11 103360467 to 103360512 45 + TSS region transcription start site region 105342
Cpgi3968 11 103362353 to 103363680 1327 CpG island CpG island 3968
Arhgap27os1 11 103363213 to 103364651 1438 + antisense lncRNA gene Rho GTPase activating protein 27, opposite strand 1
Tssr111180 11 103363341 to 103363406 65 - TSS region transcription start site region 111180
Tssr111181 11 103363431 to 103363458 27 - TSS region transcription start site region 111181
Tssr111182 11 103363628 to 103363639 11 - TSS region transcription start site region 111182
Tssr3690 11 103363644 to 103363659 15 - TSS region transcription start site region 3690
Tssr111183 11 103363671 to 103363685 14 - TSS region transcription start site region 111183
Plekhm1 11 103365092 to 103412664 47572 - protein coding gene pleckstrin homology domain containing, family M (with RUN domain) member 1
Tssr111184 11 103374051 to 103374063 12 - TSS region transcription start site region 111184
Tssr111185 11 103374084 to 103374100 16 - TSS region transcription start site region 111185
Tssr111186 11 103374104 to 103374120 16 - TSS region transcription start site region 111186
Tssr111187 11 103375962 to 103375969 7 - TSS region transcription start site region 111187
D11Mit360 11 103383166 to 103383289 123 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 360
Cia40 11 103383166 to 115130618 11747452 QTL collagen induced arthritis QTL 40
Motr1 11 103383289 to 87800372 -15582917 QTL modifier of tubby retinal degeneration 1