Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:102943159-103143183

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm26668 11 102863337 to 103075903 212566 + lincRNA gene predicted gene, 26668
C1ql1 11 102939264 to 102946461 7197 - protein coding gene complement component 1, q subcomponent-like 1
Cpgi3944 11 102945274 to 102947194 1920 CpG island CpG island 3944
Tssr111125 11 102946011 to 102946056 45 - TSS region transcription start site region 111125
Tssr111126 11 102946548 to 102946568 20 - TSS region transcription start site region 111126
Tssr111127 11 102946701 to 102946725 24 - TSS region transcription start site region 111127
Tssr111128 11 102946741 to 102946751 10 - TSS region transcription start site region 111128
Tssr111129 11 102946769 to 102946778 9 - TSS region transcription start site region 111129
Cpgi3945 11 102948296 to 102948968 672 CpG island CpG island 3945
2410004I01Rik 11 102958300 to 102964154 5854 - lincRNA gene RIKEN cDNA 2410004I01 gene
Cpgi3946 11 102963864 to 102964132 268 CpG island CpG island 3946
Cpgi3947 11 102989666 to 102990688 1022 CpG island CpG island 3947
Gm34620 11 102989944 to 102995757 5813 + lncRNA gene predicted gene, 34620
Dcakd 11 102994047 to 103028239 34192 - protein coding gene dephospho-CoA kinase domain containing
Tssr111130 11 102994310 to 102994328 18 - TSS region transcription start site region 111130
Tssr111131 11 102994674 to 102994695 21 - TSS region transcription start site region 111131
Tssr111132 11 102994704 to 102994735 31 - TSS region transcription start site region 111132
Tssr111133 11 102994879 to 102994915 36 - TSS region transcription start site region 111133
Tssr111134 11 102994949 to 102994966 17 - TSS region transcription start site region 111134
Tssr111135 11 102995005 to 102995041 36 - TSS region transcription start site region 111135
Tssr111136 11 102997405 to 102997444 39 - TSS region transcription start site region 111136
Tssr111137 11 102997525 to 102997542 17 - TSS region transcription start site region 111137
Tssr111138 11 102997556 to 102997568 12 - TSS region transcription start site region 111138
Tssr111139 11 102997586 to 102997597 11 - TSS region transcription start site region 111139
Tssr111140 11 102997601 to 102997618 17 - TSS region transcription start site region 111140
Gm9778 11 102999108 to 103000650 1542 protein coding gene predicted gene 9778
Tssr111141 11 102999796 to 102999810 14 - TSS region transcription start site region 111141
Tssr111142 11 102999828 to 102999840 12 - TSS region transcription start site region 111142
Tssr111143 11 102999843 to 102999854 11 - TSS region transcription start site region 111143
Mir6931 11 102999848 to 102999921 73 - miRNA gene microRNA 6931
Tssr111144 11 103001891 to 103001895 4 - TSS region transcription start site region 111144
Cpgi3948 11 103016579 to 103017453 874 CpG island CpG island 3948
Tssr111145 11 103017073 to 103017152 79 - TSS region transcription start site region 111145
Tssr111146 11 103017167 to 103017179 12 - TSS region transcription start site region 111146
Tssr111147 11 103018711 to 103018716 5 - TSS region transcription start site region 111147
Tssr105296 11 103027844 to 103027862 18 + TSS region transcription start site region 105296
Cpgi3949 11 103028173 to 103028830 657 CpG island CpG island 3949
Tssr111148 11 103028188 to 103028203 15 - TSS region transcription start site region 111148
Tssr111149 11 103028204 to 103028291 87 - TSS region transcription start site region 111149
Tssr105297 11 103028327 to 103028368 41 + TSS region transcription start site region 105297
Tssr111150 11 103028328 to 103028340 12 - TSS region transcription start site region 111150
Nmt1 11 103028344 to 103066111 37767 + protein coding gene N-myristoyltransferase 1
Tssr111151 11 103028345 to 103028364 19 - TSS region transcription start site region 111151
Tssr105298 11 103028542 to 103028573 31 + TSS region transcription start site region 105298
Tssr105299 11 103042984 to 103042993 9 + TSS region transcription start site region 105299
Tssr105300 11 103043013 to 103043034 21 + TSS region transcription start site region 105300
Tssr105301 11 103043159 to 103043183 24 + TSS region transcription start site region 105301
Gm42090 11 103047674 to 103049695 2021 + lncRNA gene predicted gene, 42090
Tssr105302 11 103056878 to 103056891 13 + TSS region transcription start site region 105302
Plcd3 11 103070304 to 103101658 31354 - protein coding gene phospholipase C, delta 3
Cpgi3950 11 103080002 to 103081079 1077 CpG island CpG island 3950
Cpgi3951 11 103100995 to 103103423 2428 CpG island CpG island 3951
Tssr111152 11 103101588 to 103101595 7 - TSS region transcription start site region 111152
Tssr111153 11 103101609 to 103101662 53 - TSS region transcription start site region 111153
Acbd4 11 103101688 to 103112199 10511 + protein coding gene acyl-Coenzyme A binding domain containing 4
Tssr105303 11 103101689 to 103101726 37 + TSS region transcription start site region 105303
Tssr105304 11 103101735 to 103101749 14 + TSS region transcription start site region 105304
Tssr105305 11 103103015 to 103103026 11 + TSS region transcription start site region 105305
Tssr105306 11 103103051 to 103103115 64 + TSS region transcription start site region 105306
Tssr105307 11 103104755 to 103104768 13 + TSS region transcription start site region 105307
Tssr105308 11 103104771 to 103104791 20 + TSS region transcription start site region 105308
Tssr105309 11 103104794 to 103104811 17 + TSS region transcription start site region 105309
Tssr3688 11 103104816 to 103104826 10 + TSS region transcription start site region 3688
Cpgi3952 11 103112060 to 103112393 333 CpG island CpG island 3952
Cpgi3953 11 103115127 to 103115458 331 CpG island CpG island 3953
Tssr111154 11 103115398 to 103115423 25 - TSS region transcription start site region 111154
Cpgi3954 11 103115929 to 103118030 2101 CpG island CpG island 3954
Tssr105310 11 103116228 to 103116235 7 + TSS region transcription start site region 105310
Hexim1 11 103116325 to 103119725 3400 + protein coding gene hexamethylene bis-acetamide inducible 1
C130045F17Rik 11 103125187 to 103131038 5851 unclassified gene RIKEN cDNA C130045F17 gene
Tssr111155 11 103131812 to 103131817 5 - TSS region transcription start site region 111155
Cpgi3955 11 103132151 to 103133343 1192 CpG island CpG island 3955
Hexim2 11 103132429 to 103139876 7447 + protein coding gene hexamethylene bis-acetamide inducible 2
Tssr111156 11 103132853 to 103132918 65 - TSS region transcription start site region 111156
Tssr105311 11 103133171 to 103133180 9 + TSS region transcription start site region 105311
Tssr105312 11 103133303 to 103133332 29 + TSS region transcription start site region 105312
Tssr105313 11 103133333 to 103133359 26 + TSS region transcription start site region 105313
Tssr105314 11 103133363 to 103133376 13 + TSS region transcription start site region 105314
Tssr105315 11 103134031 to 103134045 14 + TSS region transcription start site region 105315
D11Mit331 11 103139751 to 103139865 114 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 331