Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:102794911-102995067

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gjc1 11 102799579 to 102819700 20121 - protein coding gene gap junction protein, gamma 1
Cpgi3939 11 102818325 to 102819877 1552 CpG island CpG island 3939
Tssr111102 11 102818409 to 102818412 3 - TSS region transcription start site region 111102
Tssr111103 11 102819114 to 102819214 100 - TSS region transcription start site region 111103
Tssr111104 11 102819663 to 102819685 22 - TSS region transcription start site region 111104
Gm22683 11 102829878 to 102830014 136 + snoRNA gene predicted gene, 22683
Higd1b 11 102835849 to 102838040 2191 + protein coding gene HIG1 domain family, member 1B
Tssr105287 11 102835905 to 102835959 54 + TSS region transcription start site region 105287
Tssr105288 11 102836425 to 102836458 33 + TSS region transcription start site region 105288
Eftud2 11 102838473 to 102880985 42512 - protein coding gene elongation factor Tu GTP binding domain containing 2
Tssr111105 11 102846166 to 102846180 14 - TSS region transcription start site region 111105
Tssr111106 11 102862673 to 102862693 20 - TSS region transcription start site region 111106
Gm26668 11 102863337 to 103075903 212566 + lincRNA gene predicted gene, 26668
Cpgi3940 11 102880472 to 102881394 922 CpG island CpG island 3940
Tssr111107 11 102880925 to 102880977 52 - TSS region transcription start site region 111107
Tssr111108 11 102880981 to 102880992 11 - TSS region transcription start site region 111108
Tssr105289 11 102881215 to 102881246 31 + TSS region transcription start site region 105289
Ccdc103 11 102881244 to 102885215 3971 + protein coding gene coiled-coil domain containing 103
Tssr105290 11 102881264 to 102881278 14 + TSS region transcription start site region 105290
Tssr105291 11 102885140 to 102885153 13 + TSS region transcription start site region 105291
Tssr105292 11 102885160 to 102885174 14 + TSS region transcription start site region 105292
Fam187a 11 102885169 to 102886731 1562 + protein coding gene family with sequence similarity 187, member A
Gfap 11 102887336 to 102897200 9864 - protein coding gene glial fibrillary acidic protein
Tssr111109 11 102887706 to 102887717 11 - TSS region transcription start site region 111109
Tssr111110 11 102887787 to 102887798 11 - TSS region transcription start site region 111110
Tssr111111 11 102887847 to 102887860 13 - TSS region transcription start site region 111111
Tssr111112 11 102887940 to 102887949 9 - TSS region transcription start site region 111112
Tssr111113 11 102887988 to 102888001 13 - TSS region transcription start site region 111113
Tssr111114 11 102888056 to 102888071 15 - TSS region transcription start site region 111114
Tssr111115 11 102889462 to 102889478 16 - TSS region transcription start site region 111115
Cpgi3941 11 102892994 to 102893873 879 CpG island CpG island 3941
Tssr111116 11 102893134 to 102893145 11 - TSS region transcription start site region 111116
Tssr111117 11 102893513 to 102893531 18 - TSS region transcription start site region 111117
Tssr111118 11 102894534 to 102894543 9 - TSS region transcription start site region 111118
D11Nds7 11 102894911 to 102895067 156 DNA segment DNA segment, Chr 11, Nuffield Department of Surgery 7
Bolt 11 102894911 to 113919427 11024516 heritable phenotypic marker lightning bolt tail
Tssr111119 11 102895920 to 102895939 19 - TSS region transcription start site region 111119
Tssr111120 11 102895970 to 102895982 12 - TSS region transcription start site region 111120
Cpgi3942 11 102896729 to 102897138 409 CpG island CpG island 3942
Tssr105293 11 102896760 to 102896769 9 + TSS region transcription start site region 105293
Tssr111121 11 102897123 to 102897139 16 - TSS region transcription start site region 111121
Tssr111122 11 102897146 to 102897157 11 - TSS region transcription start site region 111122
Gm34560 11 102897656 to 102904476 6820 + lncRNA gene predicted gene, 34560
Gm39395 11 102900037 to 102900821 784 - lncRNA gene predicted gene, 39395
Kif18b 11 102905529 to 102925124 19595 - protein coding gene kinesin family member 18B
Tssr3687 11 102916185 to 102916189 4 - TSS region transcription start site region 3687
Cpgi3943 11 102924638 to 102925419 781 CpG island CpG island 3943
Tssr111123 11 102925051 to 102925064 13 - TSS region transcription start site region 111123
Tssr111124 11 102925086 to 102925130 44 - TSS region transcription start site region 111124
Tssr105294 11 102925272 to 102925288 16 + TSS region transcription start site region 105294
Tssr105295 11 102925599 to 102925644 45 + TSS region transcription start site region 105295
C1ql1 11 102939264 to 102946461 7197 - protein coding gene complement component 1, q subcomponent-like 1
Cpgi3944 11 102945274 to 102947194 1920 CpG island CpG island 3944
Tssr111125 11 102946011 to 102946056 45 - TSS region transcription start site region 111125
Tssr111126 11 102946548 to 102946568 20 - TSS region transcription start site region 111126
Tssr111127 11 102946701 to 102946725 24 - TSS region transcription start site region 111127
Tssr111128 11 102946741 to 102946751 10 - TSS region transcription start site region 111128
Tssr111129 11 102946769 to 102946778 9 - TSS region transcription start site region 111129
Cpgi3945 11 102948296 to 102948968 672 CpG island CpG island 3945
2410004I01Rik 11 102958300 to 102964154 5854 - lincRNA gene RIKEN cDNA 2410004I01 gene
Cpgi3946 11 102963864 to 102964132 268 CpG island CpG island 3946
Cpgi3947 11 102989666 to 102990688 1022 CpG island CpG island 3947
Gm34620 11 102989944 to 102995757 5813 + lncRNA gene predicted gene, 34620
Dcakd 11 102994047 to 103028239 34192 - protein coding gene dephospho-CoA kinase domain containing
Tssr111130 11 102994310 to 102994328 18 - TSS region transcription start site region 111130
Tssr111131 11 102994674 to 102994695 21 - TSS region transcription start site region 111131
Tssr111132 11 102994704 to 102994735 31 - TSS region transcription start site region 111132
Tssr111133 11 102994879 to 102994915 36 - TSS region transcription start site region 111133
Tssr111134 11 102994949 to 102994966 17 - TSS region transcription start site region 111134
Tssr111135 11 102995005 to 102995041 36 - TSS region transcription start site region 111135