Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:102453140-102853145

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Itga2b 11 102453297 to 102469883 16586 - protein coding gene integrin alpha 2b
Pbd1 11 102453297 to 112493297 10040000 QTL peak bone density 1
Cpgi3925 11 102455729 to 102456460 731 CpG island CpG island 3925
Gm23563 11 102458724 to 102458974 250 - unclassified non-coding RNA gene predicted gene, 23563
Cpgi3926 11 102465677 to 102465923 246 CpG island CpG island 3926
Cpgi3927 11 102467068 to 102467634 566 CpG island CpG island 3927
Tssr111084 11 102469734 to 102469752 18 - TSS region transcription start site region 111084
Tssr111085 11 102469839 to 102469866 27 - TSS region transcription start site region 111085
Tssr111086 11 102470101 to 102470110 9 - TSS region transcription start site region 111086
Tssr111087 11 102470144 to 102470165 21 - TSS region transcription start site region 111087
Gpatch8 11 102475911 to 102556192 80281 - protein coding gene G patch domain containing 8
Tssr111088 11 102476580 to 102476587 7 - TSS region transcription start site region 111088
Tssr111089 11 102478505 to 102478546 41 - TSS region transcription start site region 111089
Tssr111090 11 102480774 to 102480788 14 - TSS region transcription start site region 111090
Tssr111091 11 102481062 to 102481073 11 - TSS region transcription start site region 111091
Tssr111092 11 102481082 to 102481097 15 - TSS region transcription start site region 111092
Gm11628 11 102492439 to 102492609 170 - pseudogene predicted gene 11628
Mdk-ps1 11 102545702 to 102546022 320 + pseudogene midkine pseudogene 1
Gm25337 11 102549196 to 102549299 103 - snRNA gene predicted gene, 25337
Tssr111093 11 102553029 to 102553033 4 - TSS region transcription start site region 111093
Tssr111094 11 102553222 to 102553226 4 - TSS region transcription start site region 111094
Cpgi3928 11 102555633 to 102556569 936 CpG island CpG island 3928
Tssr111095 11 102556122 to 102556171 49 - TSS region transcription start site region 111095
Tssr105269 11 102556495 to 102556513 18 + TSS region transcription start site region 105269
Gm11627 11 102576399 to 102579119 2720 - protein coding gene predicted gene 11627
Cpgi3929 11 102578712 to 102579069 357 CpG island CpG island 3929
Tssr111096 11 102579071 to 102579083 12 - TSS region transcription start site region 111096
Tssr111097 11 102579516 to 102579538 22 - TSS region transcription start site region 111097
Cpgi3930 11 102604305 to 102606476 2171 CpG island CpG island 3930
Tssr105270 11 102604370 to 102604435 65 + TSS region transcription start site region 105270
Fzd2 11 102604431 to 102608058 3627 + protein coding gene frizzled class receptor 2
Tssr105271 11 102604454 to 102604478 24 + TSS region transcription start site region 105271
Tssr105272 11 102604519 to 102604532 13 + TSS region transcription start site region 105272
Tssr105273 11 102604610 to 102604621 11 + TSS region transcription start site region 105273
Tssr105274 11 102604755 to 102604792 37 + TSS region transcription start site region 105274
Tssr105275 11 102604823 to 102604836 13 + TSS region transcription start site region 105275
Tssr105276 11 102605976 to 102606004 28 + TSS region transcription start site region 105276
Tssr105277 11 102606244 to 102606254 10 + TSS region transcription start site region 105277
Tssr105278 11 102606898 to 102606905 7 + TSS region transcription start site region 105278
Gm11636 11 102614892 to 102616546 1654 - lincRNA gene predicted gene 11636
2810433D01Rik 11 102619796 to 102624416 4620 - lincRNA gene RIKEN cDNA 2810433D01 gene
Cpgi3931 11 102625203 to 102625518 315 CpG island CpG island 3931
Tssr3686 11 102653140 to 102653145 5 + TSS region transcription start site region 3686
Psmb5-ps 11 102659128 to 102659925 797 - pseudogene proteasome (prosome, macropain) subunit, beta type 5, pseudogene
Cpgi3932 11 102659561 to 102659803 242 CpG island CpG island 3932
Gm22920 11 102659572 to 102659680 108 - miRNA gene predicted gene, 22920
Meioc 11 102664966 to 102682240 17274 + protein coding gene meiosis specific with coiled-coil domain
1700052M18Rik 11 102664967 to 102665247 280 unclassified gene RIKEN cDNA 1700052M18 gene
Cpgi3933 11 102665111 to 102666486 1375 CpG island CpG island 3933
Tssr105279 11 102665534 to 102665560 26 + TSS region transcription start site region 105279
Tssr105280 11 102665566 to 102665595 29 + TSS region transcription start site region 105280
Tssr105281 11 102665612 to 102665633 21 + TSS region transcription start site region 105281
Tssr111098 11 102666007 to 102666017 10 - TSS region transcription start site region 111098
Ccdc43 11 102684686 to 102697782 13096 - protein coding gene coiled-coil domain containing 43
Tssr111099 11 102688108 to 102688112 4 - TSS region transcription start site region 111099
Cpgi3934 11 102697437 to 102698040 603 CpG island CpG island 3934
Tssr111100 11 102697710 to 102697757 47 - TSS region transcription start site region 111100
Gm34392 11 102697779 to 102698214 435 + lncRNA gene predicted gene, 34392
Tssr105282 11 102710343 to 102710345 2 + TSS region transcription start site region 105282
Gm39501 11 102726811 to 102752979 26168 + protein coding gene predicted gene, 39501
Gm11637 11 102731245 to 102731775 530 - pseudogene predicted gene 11637
Cpgi3935 11 102739302 to 102739695 393 CpG island CpG island 3935
Gm16342 11 102741090 to 102744585 3495 + pseudogene predicted gene 16342
Cpgi3936 11 102760982 to 102762262 1280 CpG island CpG island 3936
Tssr105283 11 102761402 to 102761448 46 + TSS region transcription start site region 105283
Adam11 11 102761439 to 102780262 18823 + protein coding gene a disintegrin and metallopeptidase domain 11
Tssr105284 11 102761563 to 102761620 57 + TSS region transcription start site region 105284
Cpgi3937 11 102773905 to 102775065 1160 CpG island CpG island 3937
Tssr105285 11 102774072 to 102774122 50 + TSS region transcription start site region 105285
Tssr105286 11 102775222 to 102775227 5 + TSS region transcription start site region 105286
Cpgi3938 11 102777644 to 102777991 347 CpG island CpG island 3938
Tssr111101 11 102780258 to 102780260 2 - TSS region transcription start site region 111101
Gjc1 11 102799579 to 102819700 20121 - protein coding gene gap junction protein, gamma 1
Cpgi3939 11 102818325 to 102819877 1552 CpG island CpG island 3939
Tssr111102 11 102818409 to 102818412 3 - TSS region transcription start site region 111102
Tssr111103 11 102819114 to 102819214 100 - TSS region transcription start site region 111103
Tssr111104 11 102819663 to 102819685 22 - TSS region transcription start site region 111104
Gm22683 11 102829878 to 102830014 136 + snoRNA gene predicted gene, 22683
Higd1b 11 102835849 to 102838040 2191 + protein coding gene HIG1 domain family, member 1B
Tssr105287 11 102835905 to 102835959 54 + TSS region transcription start site region 105287
Tssr105288 11 102836425 to 102836458 33 + TSS region transcription start site region 105288
Eftud2 11 102838473 to 102880985 42512 - protein coding gene elongation factor Tu GTP binding domain containing 2
Tssr111105 11 102846166 to 102846180 14 - TSS region transcription start site region 111105