Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:102448605-103938651

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378 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Itga2b 11 102453297 to 102469883 16586 - protein coding gene integrin alpha 2b
Pbd1 11 102453297 to 112493297 10040000 QTL peak bone density 1
Cpgi3925 11 102455729 to 102456460 731 CpG island CpG island 3925
Gm23563 11 102458724 to 102458974 250 - unclassified non-coding RNA gene predicted gene, 23563
Cpgi3926 11 102465677 to 102465923 246 CpG island CpG island 3926
Cpgi3927 11 102467068 to 102467634 566 CpG island CpG island 3927
Tssr111084 11 102469734 to 102469752 18 - TSS region transcription start site region 111084
Tssr111085 11 102469839 to 102469866 27 - TSS region transcription start site region 111085
Tssr111086 11 102470101 to 102470110 9 - TSS region transcription start site region 111086
Tssr111087 11 102470144 to 102470165 21 - TSS region transcription start site region 111087
Gpatch8 11 102475911 to 102556192 80281 - protein coding gene G patch domain containing 8
Tssr111088 11 102476580 to 102476587 7 - TSS region transcription start site region 111088
Tssr111089 11 102478505 to 102478546 41 - TSS region transcription start site region 111089
Tssr111090 11 102480774 to 102480788 14 - TSS region transcription start site region 111090
Tssr111091 11 102481062 to 102481073 11 - TSS region transcription start site region 111091
Tssr111092 11 102481082 to 102481097 15 - TSS region transcription start site region 111092
Gm11628 11 102492439 to 102492609 170 - pseudogene predicted gene 11628
Mdk-ps1 11 102545702 to 102546022 320 + pseudogene midkine pseudogene 1
Gm25337 11 102549196 to 102549299 103 - snRNA gene predicted gene, 25337
Tssr111093 11 102553029 to 102553033 4 - TSS region transcription start site region 111093
Tssr111094 11 102553222 to 102553226 4 - TSS region transcription start site region 111094
Cpgi3928 11 102555633 to 102556569 936 CpG island CpG island 3928
Tssr111095 11 102556122 to 102556171 49 - TSS region transcription start site region 111095
Tssr105269 11 102556495 to 102556513 18 + TSS region transcription start site region 105269
Gm11627 11 102576399 to 102579119 2720 - protein coding gene predicted gene 11627
Cpgi3929 11 102578712 to 102579069 357 CpG island CpG island 3929
Tssr111096 11 102579071 to 102579083 12 - TSS region transcription start site region 111096
Tssr111097 11 102579516 to 102579538 22 - TSS region transcription start site region 111097
Cpgi3930 11 102604305 to 102606476 2171 CpG island CpG island 3930
Tssr105270 11 102604370 to 102604435 65 + TSS region transcription start site region 105270
Fzd2 11 102604431 to 102608058 3627 + protein coding gene frizzled class receptor 2
Tssr105271 11 102604454 to 102604478 24 + TSS region transcription start site region 105271
Tssr105272 11 102604519 to 102604532 13 + TSS region transcription start site region 105272
Tssr105273 11 102604610 to 102604621 11 + TSS region transcription start site region 105273
Tssr105274 11 102604755 to 102604792 37 + TSS region transcription start site region 105274
Tssr105275 11 102604823 to 102604836 13 + TSS region transcription start site region 105275
Tssr105276 11 102605976 to 102606004 28 + TSS region transcription start site region 105276
Tssr105277 11 102606244 to 102606254 10 + TSS region transcription start site region 105277
Tssr105278 11 102606898 to 102606905 7 + TSS region transcription start site region 105278
Gm11636 11 102614892 to 102616546 1654 - lincRNA gene predicted gene 11636
2810433D01Rik 11 102619796 to 102624416 4620 - lincRNA gene RIKEN cDNA 2810433D01 gene
Cpgi3931 11 102625203 to 102625518 315 CpG island CpG island 3931
Tssr3686 11 102653140 to 102653145 5 + TSS region transcription start site region 3686
Psmb5-ps 11 102659128 to 102659925 797 - pseudogene proteasome (prosome, macropain) subunit, beta type 5, pseudogene
Cpgi3932 11 102659561 to 102659803 242 CpG island CpG island 3932
Gm22920 11 102659572 to 102659680 108 - miRNA gene predicted gene, 22920
Meioc 11 102664966 to 102682240 17274 + protein coding gene meiosis specific with coiled-coil domain
1700052M18Rik 11 102664967 to 102665247 280 unclassified gene RIKEN cDNA 1700052M18 gene
Cpgi3933 11 102665111 to 102666486 1375 CpG island CpG island 3933
Tssr105279 11 102665534 to 102665560 26 + TSS region transcription start site region 105279
Tssr105280 11 102665566 to 102665595 29 + TSS region transcription start site region 105280
Tssr105281 11 102665612 to 102665633 21 + TSS region transcription start site region 105281
Tssr111098 11 102666007 to 102666017 10 - TSS region transcription start site region 111098
Ccdc43 11 102684686 to 102697782 13096 - protein coding gene coiled-coil domain containing 43
Tssr111099 11 102688108 to 102688112 4 - TSS region transcription start site region 111099
Cpgi3934 11 102697437 to 102698040 603 CpG island CpG island 3934
Tssr111100 11 102697710 to 102697757 47 - TSS region transcription start site region 111100
Gm34392 11 102697779 to 102698214 435 + lncRNA gene predicted gene, 34392
Tssr105282 11 102710343 to 102710345 2 + TSS region transcription start site region 105282
Gm39501 11 102726811 to 102752979 26168 + protein coding gene predicted gene, 39501
Gm11637 11 102731245 to 102731775 530 - pseudogene predicted gene 11637
Cpgi3935 11 102739302 to 102739695 393 CpG island CpG island 3935
Gm16342 11 102741090 to 102744585 3495 + pseudogene predicted gene 16342
Cpgi3936 11 102760982 to 102762262 1280 CpG island CpG island 3936
Tssr105283 11 102761402 to 102761448 46 + TSS region transcription start site region 105283
Adam11 11 102761439 to 102780262 18823 + protein coding gene a disintegrin and metallopeptidase domain 11
Tssr105284 11 102761563 to 102761620 57 + TSS region transcription start site region 105284
Cpgi3937 11 102773905 to 102775065 1160 CpG island CpG island 3937
Tssr105285 11 102774072 to 102774122 50 + TSS region transcription start site region 105285
Tssr105286 11 102775222 to 102775227 5 + TSS region transcription start site region 105286
Cpgi3938 11 102777644 to 102777991 347 CpG island CpG island 3938
Tssr111101 11 102780258 to 102780260 2 - TSS region transcription start site region 111101
Gjc1 11 102799579 to 102819700 20121 - protein coding gene gap junction protein, gamma 1
Cpgi3939 11 102818325 to 102819877 1552 CpG island CpG island 3939
Tssr111102 11 102818409 to 102818412 3 - TSS region transcription start site region 111102
Tssr111103 11 102819114 to 102819214 100 - TSS region transcription start site region 111103
Tssr111104 11 102819663 to 102819685 22 - TSS region transcription start site region 111104
Gm22683 11 102829878 to 102830014 136 + snoRNA gene predicted gene, 22683
Higd1b 11 102835849 to 102838040 2191 + protein coding gene HIG1 domain family, member 1B
Tssr105287 11 102835905 to 102835959 54 + TSS region transcription start site region 105287
Tssr105288 11 102836425 to 102836458 33 + TSS region transcription start site region 105288
Eftud2 11 102838473 to 102880985 42512 - protein coding gene elongation factor Tu GTP binding domain containing 2
Tssr111105 11 102846166 to 102846180 14 - TSS region transcription start site region 111105
Tssr111106 11 102862673 to 102862693 20 - TSS region transcription start site region 111106
Gm26668 11 102863337 to 103075903 212566 + lincRNA gene predicted gene, 26668
Cpgi3940 11 102880472 to 102881394 922 CpG island CpG island 3940
Tssr111107 11 102880925 to 102880977 52 - TSS region transcription start site region 111107
Tssr111108 11 102880981 to 102880992 11 - TSS region transcription start site region 111108
Tssr105289 11 102881215 to 102881246 31 + TSS region transcription start site region 105289
Ccdc103 11 102881244 to 102885215 3971 + protein coding gene coiled-coil domain containing 103
Tssr105290 11 102881264 to 102881278 14 + TSS region transcription start site region 105290
Tssr105291 11 102885140 to 102885153 13 + TSS region transcription start site region 105291
Tssr105292 11 102885160 to 102885174 14 + TSS region transcription start site region 105292
Fam187a 11 102885169 to 102886731 1562 + protein coding gene family with sequence similarity 187, member A
Gfap 11 102887336 to 102897200 9864 - protein coding gene glial fibrillary acidic protein
Tssr111109 11 102887706 to 102887717 11 - TSS region transcription start site region 111109
Tssr111110 11 102887787 to 102887798 11 - TSS region transcription start site region 111110
Tssr111111 11 102887847 to 102887860 13 - TSS region transcription start site region 111111
Tssr111112 11 102887940 to 102887949 9 - TSS region transcription start site region 111112
Tssr111113 11 102887988 to 102888001 13 - TSS region transcription start site region 111113
Tssr111114 11 102888056 to 102888071 15 - TSS region transcription start site region 111114
Tssr111115 11 102889462 to 102889478 16 - TSS region transcription start site region 111115
Cpgi3941 11 102892994 to 102893873 879 CpG island CpG island 3941
Tssr111116 11 102893134 to 102893145 11 - TSS region transcription start site region 111116
Tssr111117 11 102893513 to 102893531 18 - TSS region transcription start site region 111117
Tssr111118 11 102894534 to 102894543 9 - TSS region transcription start site region 111118
D11Nds7 11 102894911 to 102895067 156 DNA segment DNA segment, Chr 11, Nuffield Department of Surgery 7
Bolt 11 102894911 to 113919427 11024516 heritable phenotypic marker lightning bolt tail
Tssr111119 11 102895920 to 102895939 19 - TSS region transcription start site region 111119
Tssr111120 11 102895970 to 102895982 12 - TSS region transcription start site region 111120
Cpgi3942 11 102896729 to 102897138 409 CpG island CpG island 3942
Tssr105293 11 102896760 to 102896769 9 + TSS region transcription start site region 105293
Tssr111121 11 102897123 to 102897139 16 - TSS region transcription start site region 111121
Tssr111122 11 102897146 to 102897157 11 - TSS region transcription start site region 111122
Gm34560 11 102897656 to 102904476 6820 + lncRNA gene predicted gene, 34560
Gm39395 11 102900037 to 102900821 784 - lncRNA gene predicted gene, 39395
Kif18b 11 102905529 to 102925124 19595 - protein coding gene kinesin family member 18B
Tssr3687 11 102916185 to 102916189 4 - TSS region transcription start site region 3687
Cpgi3943 11 102924638 to 102925419 781 CpG island CpG island 3943
Tssr111123 11 102925051 to 102925064 13 - TSS region transcription start site region 111123
Tssr111124 11 102925086 to 102925130 44 - TSS region transcription start site region 111124
Tssr105294 11 102925272 to 102925288 16 + TSS region transcription start site region 105294
Tssr105295 11 102925599 to 102925644 45 + TSS region transcription start site region 105295
C1ql1 11 102939264 to 102946461 7197 - protein coding gene complement component 1, q subcomponent-like 1
Cpgi3944 11 102945274 to 102947194 1920 CpG island CpG island 3944
Tssr111125 11 102946011 to 102946056 45 - TSS region transcription start site region 111125
Tssr111126 11 102946548 to 102946568 20 - TSS region transcription start site region 111126
Tssr111127 11 102946701 to 102946725 24 - TSS region transcription start site region 111127
Tssr111128 11 102946741 to 102946751 10 - TSS region transcription start site region 111128
Tssr111129 11 102946769 to 102946778 9 - TSS region transcription start site region 111129
Cpgi3945 11 102948296 to 102948968 672 CpG island CpG island 3945
2410004I01Rik 11 102958300 to 102964154 5854 - lincRNA gene RIKEN cDNA 2410004I01 gene
Cpgi3946 11 102963864 to 102964132 268 CpG island CpG island 3946
Cpgi3947 11 102989666 to 102990688 1022 CpG island CpG island 3947
Gm34620 11 102989944 to 102995757 5813 + lncRNA gene predicted gene, 34620
Dcakd 11 102994047 to 103028239 34192 - protein coding gene dephospho-CoA kinase domain containing
Tssr111130 11 102994310 to 102994328 18 - TSS region transcription start site region 111130
Tssr111131 11 102994674 to 102994695 21 - TSS region transcription start site region 111131
Tssr111132 11 102994704 to 102994735 31 - TSS region transcription start site region 111132
Tssr111133 11 102994879 to 102994915 36 - TSS region transcription start site region 111133
Tssr111134 11 102994949 to 102994966 17 - TSS region transcription start site region 111134
Tssr111135 11 102995005 to 102995041 36 - TSS region transcription start site region 111135
Tssr111136 11 102997405 to 102997444 39 - TSS region transcription start site region 111136
Tssr111137 11 102997525 to 102997542 17 - TSS region transcription start site region 111137
Tssr111138 11 102997556 to 102997568 12 - TSS region transcription start site region 111138
Tssr111139 11 102997586 to 102997597 11 - TSS region transcription start site region 111139
Tssr111140 11 102997601 to 102997618 17 - TSS region transcription start site region 111140
Gm9778 11 102999108 to 103000650 1542 protein coding gene predicted gene 9778
Tssr111141 11 102999796 to 102999810 14 - TSS region transcription start site region 111141
Tssr111142 11 102999828 to 102999840 12 - TSS region transcription start site region 111142
Tssr111143 11 102999843 to 102999854 11 - TSS region transcription start site region 111143
Mir6931 11 102999848 to 102999921 73 - miRNA gene microRNA 6931
Tssr111144 11 103001891 to 103001895 4 - TSS region transcription start site region 111144
Cpgi3948 11 103016579 to 103017453 874 CpG island CpG island 3948
Tssr111145 11 103017073 to 103017152 79 - TSS region transcription start site region 111145
Tssr111146 11 103017167 to 103017179 12 - TSS region transcription start site region 111146
Tssr111147 11 103018711 to 103018716 5 - TSS region transcription start site region 111147
Tssr105296 11 103027844 to 103027862 18 + TSS region transcription start site region 105296
Cpgi3949 11 103028173 to 103028830 657 CpG island CpG island 3949
Tssr111148 11 103028188 to 103028203 15 - TSS region transcription start site region 111148
Tssr111149 11 103028204 to 103028291 87 - TSS region transcription start site region 111149
Tssr105297 11 103028327 to 103028368 41 + TSS region transcription start site region 105297
Tssr111150 11 103028328 to 103028340 12 - TSS region transcription start site region 111150
Nmt1 11 103028344 to 103066111 37767 + protein coding gene N-myristoyltransferase 1
Tssr111151 11 103028345 to 103028364 19 - TSS region transcription start site region 111151
Tssr105298 11 103028542 to 103028573 31 + TSS region transcription start site region 105298
Tssr105299 11 103042984 to 103042993 9 + TSS region transcription start site region 105299
Tssr105300 11 103043013 to 103043034 21 + TSS region transcription start site region 105300
Tssr105301 11 103043159 to 103043183 24 + TSS region transcription start site region 105301
Gm42090 11 103047674 to 103049695 2021 + lncRNA gene predicted gene, 42090
Tssr105302 11 103056878 to 103056891 13 + TSS region transcription start site region 105302
Plcd3 11 103070304 to 103101658 31354 - protein coding gene phospholipase C, delta 3
Cpgi3950 11 103080002 to 103081079 1077 CpG island CpG island 3950
Cpgi3951 11 103100995 to 103103423 2428 CpG island CpG island 3951
Tssr111152 11 103101588 to 103101595 7 - TSS region transcription start site region 111152
Tssr111153 11 103101609 to 103101662 53 - TSS region transcription start site region 111153
Acbd4 11 103101688 to 103112199 10511 + protein coding gene acyl-Coenzyme A binding domain containing 4
Tssr105303 11 103101689 to 103101726 37 + TSS region transcription start site region 105303
Tssr105304 11 103101735 to 103101749 14 + TSS region transcription start site region 105304
Tssr105305 11 103103015 to 103103026 11 + TSS region transcription start site region 105305
Tssr105306 11 103103051 to 103103115 64 + TSS region transcription start site region 105306
Tssr105307 11 103104755 to 103104768 13 + TSS region transcription start site region 105307
Tssr105308 11 103104771 to 103104791 20 + TSS region transcription start site region 105308
Tssr105309 11 103104794 to 103104811 17 + TSS region transcription start site region 105309
Tssr3688 11 103104816 to 103104826 10 + TSS region transcription start site region 3688
Cpgi3952 11 103112060 to 103112393 333 CpG island CpG island 3952
Cpgi3953 11 103115127 to 103115458 331 CpG island CpG island 3953
Tssr111154 11 103115398 to 103115423 25 - TSS region transcription start site region 111154
Cpgi3954 11 103115929 to 103118030 2101 CpG island CpG island 3954
Tssr105310 11 103116228 to 103116235 7 + TSS region transcription start site region 105310
Hexim1 11 103116325 to 103119725 3400 + protein coding gene hexamethylene bis-acetamide inducible 1
C130045F17Rik 11 103125187 to 103131038 5851 unclassified gene RIKEN cDNA C130045F17 gene
Tssr111155 11 103131812 to 103131817 5 - TSS region transcription start site region 111155
Cpgi3955 11 103132151 to 103133343 1192 CpG island CpG island 3955
Hexim2 11 103132429 to 103139876 7447 + protein coding gene hexamethylene bis-acetamide inducible 2
Tssr111156 11 103132853 to 103132918 65 - TSS region transcription start site region 111156
Tssr105311 11 103133171 to 103133180 9 + TSS region transcription start site region 105311
Tssr105312 11 103133303 to 103133332 29 + TSS region transcription start site region 105312
Tssr105313 11 103133333 to 103133359 26 + TSS region transcription start site region 105313
Tssr105314 11 103133363 to 103133376 13 + TSS region transcription start site region 105314