Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:102389310-103599328

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400 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi3919 11 102393054 to 102393945 891 CpG island CpG island 3919
Rundc3a 11 102393403 to 102402555 9152 + protein coding gene RUN domain containing 3A
Tssr105217 11 102393419 to 102393496 77 + TSS region transcription start site region 105217
Tssr105218 11 102393521 to 102393542 21 + TSS region transcription start site region 105218
Tssr105219 11 102393551 to 102393562 11 + TSS region transcription start site region 105219
Tssr105220 11 102393582 to 102393589 7 + TSS region transcription start site region 105220
Cpgi3920 11 102399249 to 102400233 984 CpG island CpG island 3920
Tssr105221 11 102399815 to 102399826 11 + TSS region transcription start site region 105221
Tssr105222 11 102399829 to 102399842 13 + TSS region transcription start site region 105222
Slc25a39 11 102402985 to 102407946 4961 - protein coding gene solute carrier family 25, member 39
Tssr111063 11 102403282 to 102403296 14 - TSS region transcription start site region 111063
Mir6930 11 102404920 to 102404987 67 - miRNA gene microRNA 6930
Tssr111064 11 102406609 to 102406622 13 - TSS region transcription start site region 111064
Tssr111065 11 102406742 to 102406752 10 - TSS region transcription start site region 111065
Tssr111066 11 102406766 to 102406782 16 - TSS region transcription start site region 111066
Tssr111067 11 102406783 to 102406828 45 - TSS region transcription start site region 111067
Cpgi3921 11 102406972 to 102408114 1142 CpG island CpG island 3921
Tssr111068 11 102407437 to 102407448 11 - TSS region transcription start site region 111068
Tssr111069 11 102407455 to 102407528 73 - TSS region transcription start site region 111069
Tssr105223 11 102407613 to 102407632 19 + TSS region transcription start site region 105223
Tssr105224 11 102407719 to 102407733 14 + TSS region transcription start site region 105224
Tssr111070 11 102407857 to 102407895 38 - TSS region transcription start site region 111070
Tssr111071 11 102407899 to 102407913 14 - TSS region transcription start site region 111071
Tssr111072 11 102407922 to 102407951 29 - TSS region transcription start site region 111072
Cpgi3922 11 102408292 to 102408811 519 CpG island CpG island 3922
Tssr111073 11 102408457 to 102408473 16 - TSS region transcription start site region 111073
Tssr105225 11 102429353 to 102429373 20 + TSS region transcription start site region 105225
Tssr111074 11 102430195 to 102430264 69 - TSS region transcription start site region 111074
Grn 11 102430322 to 102436809 6487 + protein coding gene granulin
Tssr105226 11 102430368 to 102430399 31 + TSS region transcription start site region 105226
Tssr105227 11 102430463 to 102430523 60 + TSS region transcription start site region 105227
Tssr105228 11 102432555 to 102432581 26 + TSS region transcription start site region 105228
Tssr105229 11 102432786 to 102432802 16 + TSS region transcription start site region 105229
Tssr105230 11 102432822 to 102432845 23 + TSS region transcription start site region 105230
Tssr105231 11 102432850 to 102432864 14 + TSS region transcription start site region 105231
Tssr105232 11 102432886 to 102432910 24 + TSS region transcription start site region 105232
Tssr105233 11 102433000 to 102433027 27 + TSS region transcription start site region 105233
Tssr105234 11 102433030 to 102433051 21 + TSS region transcription start site region 105234
Tssr105235 11 102433069 to 102433082 13 + TSS region transcription start site region 105235
Tssr105236 11 102433216 to 102433237 21 + TSS region transcription start site region 105236
Tssr105237 11 102433239 to 102433315 76 + TSS region transcription start site region 105237
Tssr105238 11 102433318 to 102433329 11 + TSS region transcription start site region 105238
Tssr105239 11 102433473 to 102433514 41 + TSS region transcription start site region 105239
Tssr105240 11 102433518 to 102433534 16 + TSS region transcription start site region 105240
Tssr105241 11 102433924 to 102433957 33 + TSS region transcription start site region 105241
Tssr105242 11 102433960 to 102433991 31 + TSS region transcription start site region 105242
Tssr111075 11 102433970 to 102433981 11 - TSS region transcription start site region 111075
Tssr105243 11 102434126 to 102434134 8 + TSS region transcription start site region 105243
Tssr105244 11 102434141 to 102434154 13 + TSS region transcription start site region 105244
Tssr105245 11 102434160 to 102434171 11 + TSS region transcription start site region 105245
Tssr105246 11 102434179 to 102434190 11 + TSS region transcription start site region 105246
Tssr105247 11 102434207 to 102434238 31 + TSS region transcription start site region 105247
Tssr105248 11 102434391 to 102434438 47 + TSS region transcription start site region 105248
Tssr105249 11 102434444 to 102434471 27 + TSS region transcription start site region 105249
Tssr105250 11 102434478 to 102434489 11 + TSS region transcription start site region 105250
Tssr105251 11 102434700 to 102434802 102 + TSS region transcription start site region 105251
Tssr105252 11 102435061 to 102435075 14 + TSS region transcription start site region 105252
Tssr105253 11 102435078 to 102435113 35 + TSS region transcription start site region 105253
Tssr105254 11 102435238 to 102435257 19 + TSS region transcription start site region 105254
Tssr105255 11 102435258 to 102435267 9 + TSS region transcription start site region 105255
Tssr111076 11 102435265 to 102435280 15 - TSS region transcription start site region 111076
Tssr105256 11 102435278 to 102435297 19 + TSS region transcription start site region 105256
Tssr105257 11 102435315 to 102435329 14 + TSS region transcription start site region 105257
Tssr105258 11 102435345 to 102435370 25 + TSS region transcription start site region 105258
Tssr111077 11 102435387 to 102435435 48 - TSS region transcription start site region 111077
Tssr105259 11 102435704 to 102435727 23 + TSS region transcription start site region 105259
Tssr105260 11 102435741 to 102435756 15 + TSS region transcription start site region 105260
Tssr105261 11 102435795 to 102435864 69 + TSS region transcription start site region 105261
Tssr105262 11 102435880 to 102435895 15 + TSS region transcription start site region 105262
Tssr105263 11 102436040 to 102436052 12 + TSS region transcription start site region 105263
Tssr105264 11 102436099 to 102436150 51 + TSS region transcription start site region 105264
Tssr111078 11 102436162 to 102436197 35 - TSS region transcription start site region 111078
Tssr105265 11 102436164 to 102436189 25 + TSS region transcription start site region 105265
Tssr105266 11 102436369 to 102436380 11 + TSS region transcription start site region 105266
Tssr105267 11 102436475 to 102436484 9 + TSS region transcription start site region 105267
Tssr105268 11 102436520 to 102436534 14 + TSS region transcription start site region 105268
Tssr111079 11 102436803 to 102436807 4 - TSS region transcription start site region 111079
Fam171a2 11 102436981 to 102447674 10693 - protein coding gene family with sequence similarity 171, member A2
Cpgi3923 11 102437047 to 102438945 1898 CpG island CpG island 3923
Tssr3685 11 102440615 to 102440618 3 + TSS region transcription start site region 3685
Tssr111080 11 102444796 to 102444803 7 - TSS region transcription start site region 111080
Cpgi3924 11 102446695 to 102448156 1461 CpG island CpG island 3924
Tssr111081 11 102447597 to 102447610 13 - TSS region transcription start site region 111081
Tssr111082 11 102447612 to 102447642 30 - TSS region transcription start site region 111082
Tssr111083 11 102447647 to 102447677 30 - TSS region transcription start site region 111083
Itga2b 11 102453297 to 102469883 16586 - protein coding gene integrin alpha 2b
Pbd1 11 102453297 to 112493297 10040000 QTL peak bone density 1
Cpgi3925 11 102455729 to 102456460 731 CpG island CpG island 3925
Gm23563 11 102458724 to 102458974 250 - unclassified non-coding RNA gene predicted gene, 23563
Cpgi3926 11 102465677 to 102465923 246 CpG island CpG island 3926
Cpgi3927 11 102467068 to 102467634 566 CpG island CpG island 3927
Tssr111084 11 102469734 to 102469752 18 - TSS region transcription start site region 111084
Tssr111085 11 102469839 to 102469866 27 - TSS region transcription start site region 111085
Tssr111086 11 102470101 to 102470110 9 - TSS region transcription start site region 111086
Tssr111087 11 102470144 to 102470165 21 - TSS region transcription start site region 111087
Gpatch8 11 102475911 to 102556192 80281 - protein coding gene G patch domain containing 8
Tssr111088 11 102476580 to 102476587 7 - TSS region transcription start site region 111088
Tssr111089 11 102478505 to 102478546 41 - TSS region transcription start site region 111089
Tssr111090 11 102480774 to 102480788 14 - TSS region transcription start site region 111090
Tssr111091 11 102481062 to 102481073 11 - TSS region transcription start site region 111091
Tssr111092 11 102481082 to 102481097 15 - TSS region transcription start site region 111092
Gm11628 11 102492439 to 102492609 170 - pseudogene predicted gene 11628
Mdk-ps1 11 102545702 to 102546022 320 + pseudogene midkine pseudogene 1
Gm25337 11 102549196 to 102549299 103 - snRNA gene predicted gene, 25337
Tssr111093 11 102553029 to 102553033 4 - TSS region transcription start site region 111093
Tssr111094 11 102553222 to 102553226 4 - TSS region transcription start site region 111094
Cpgi3928 11 102555633 to 102556569 936 CpG island CpG island 3928
Tssr111095 11 102556122 to 102556171 49 - TSS region transcription start site region 111095
Tssr105269 11 102556495 to 102556513 18 + TSS region transcription start site region 105269
Gm11627 11 102576399 to 102579119 2720 - protein coding gene predicted gene 11627
Cpgi3929 11 102578712 to 102579069 357 CpG island CpG island 3929
Tssr111096 11 102579071 to 102579083 12 - TSS region transcription start site region 111096
Tssr111097 11 102579516 to 102579538 22 - TSS region transcription start site region 111097
Cpgi3930 11 102604305 to 102606476 2171 CpG island CpG island 3930
Tssr105270 11 102604370 to 102604435 65 + TSS region transcription start site region 105270
Fzd2 11 102604431 to 102608058 3627 + protein coding gene frizzled class receptor 2
Tssr105271 11 102604454 to 102604478 24 + TSS region transcription start site region 105271
Tssr105272 11 102604519 to 102604532 13 + TSS region transcription start site region 105272
Tssr105273 11 102604610 to 102604621 11 + TSS region transcription start site region 105273
Tssr105274 11 102604755 to 102604792 37 + TSS region transcription start site region 105274
Tssr105275 11 102604823 to 102604836 13 + TSS region transcription start site region 105275
Tssr105276 11 102605976 to 102606004 28 + TSS region transcription start site region 105276
Tssr105277 11 102606244 to 102606254 10 + TSS region transcription start site region 105277
Tssr105278 11 102606898 to 102606905 7 + TSS region transcription start site region 105278
Gm11636 11 102614892 to 102616546 1654 - lincRNA gene predicted gene 11636
2810433D01Rik 11 102619796 to 102624416 4620 - lincRNA gene RIKEN cDNA 2810433D01 gene
Cpgi3931 11 102625203 to 102625518 315 CpG island CpG island 3931
Tssr3686 11 102653140 to 102653145 5 + TSS region transcription start site region 3686
Psmb5-ps 11 102659128 to 102659925 797 - pseudogene proteasome (prosome, macropain) subunit, beta type 5, pseudogene
Cpgi3932 11 102659561 to 102659803 242 CpG island CpG island 3932
Gm22920 11 102659572 to 102659680 108 - miRNA gene predicted gene, 22920
Meioc 11 102664966 to 102682240 17274 + protein coding gene meiosis specific with coiled-coil domain
1700052M18Rik 11 102664967 to 102665247 280 unclassified gene RIKEN cDNA 1700052M18 gene
Cpgi3933 11 102665111 to 102666486 1375 CpG island CpG island 3933
Tssr105279 11 102665534 to 102665560 26 + TSS region transcription start site region 105279
Tssr105280 11 102665566 to 102665595 29 + TSS region transcription start site region 105280
Tssr105281 11 102665612 to 102665633 21 + TSS region transcription start site region 105281
Tssr111098 11 102666007 to 102666017 10 - TSS region transcription start site region 111098
Ccdc43 11 102684686 to 102697782 13096 - protein coding gene coiled-coil domain containing 43
Tssr111099 11 102688108 to 102688112 4 - TSS region transcription start site region 111099
Cpgi3934 11 102697437 to 102698040 603 CpG island CpG island 3934
Tssr111100 11 102697710 to 102697757 47 - TSS region transcription start site region 111100
Gm34392 11 102697779 to 102698214 435 + lncRNA gene predicted gene, 34392
Tssr105282 11 102710343 to 102710345 2 + TSS region transcription start site region 105282
Gm39501 11 102726811 to 102752979 26168 + protein coding gene predicted gene, 39501
Gm11637 11 102731245 to 102731775 530 - pseudogene predicted gene 11637
Cpgi3935 11 102739302 to 102739695 393 CpG island CpG island 3935
Gm16342 11 102741090 to 102744585 3495 + pseudogene predicted gene 16342
Cpgi3936 11 102760982 to 102762262 1280 CpG island CpG island 3936
Tssr105283 11 102761402 to 102761448 46 + TSS region transcription start site region 105283
Adam11 11 102761439 to 102780262 18823 + protein coding gene a disintegrin and metallopeptidase domain 11
Tssr105284 11 102761563 to 102761620 57 + TSS region transcription start site region 105284
Cpgi3937 11 102773905 to 102775065 1160 CpG island CpG island 3937
Tssr105285 11 102774072 to 102774122 50 + TSS region transcription start site region 105285
Tssr105286 11 102775222 to 102775227 5 + TSS region transcription start site region 105286
Cpgi3938 11 102777644 to 102777991 347 CpG island CpG island 3938
Tssr111101 11 102780258 to 102780260 2 - TSS region transcription start site region 111101
Gjc1 11 102799579 to 102819700 20121 - protein coding gene gap junction protein, gamma 1
Cpgi3939 11 102818325 to 102819877 1552 CpG island CpG island 3939
Tssr111102 11 102818409 to 102818412 3 - TSS region transcription start site region 111102
Tssr111103 11 102819114 to 102819214 100 - TSS region transcription start site region 111103
Tssr111104 11 102819663 to 102819685 22 - TSS region transcription start site region 111104
Gm22683 11 102829878 to 102830014 136 + snoRNA gene predicted gene, 22683
Higd1b 11 102835849 to 102838040 2191 + protein coding gene HIG1 domain family, member 1B
Tssr105287 11 102835905 to 102835959 54 + TSS region transcription start site region 105287
Tssr105288 11 102836425 to 102836458 33 + TSS region transcription start site region 105288
Eftud2 11 102838473 to 102880985 42512 - protein coding gene elongation factor Tu GTP binding domain containing 2
Tssr111105 11 102846166 to 102846180 14 - TSS region transcription start site region 111105
Tssr111106 11 102862673 to 102862693 20 - TSS region transcription start site region 111106
Gm26668 11 102863337 to 103075903 212566 + lincRNA gene predicted gene, 26668
Cpgi3940 11 102880472 to 102881394 922 CpG island CpG island 3940
Tssr111107 11 102880925 to 102880977 52 - TSS region transcription start site region 111107
Tssr111108 11 102880981 to 102880992 11 - TSS region transcription start site region 111108
Tssr105289 11 102881215 to 102881246 31 + TSS region transcription start site region 105289
Ccdc103 11 102881244 to 102885215 3971 + protein coding gene coiled-coil domain containing 103
Tssr105290 11 102881264 to 102881278 14 + TSS region transcription start site region 105290
Tssr105291 11 102885140 to 102885153 13 + TSS region transcription start site region 105291
Tssr105292 11 102885160 to 102885174 14 + TSS region transcription start site region 105292
Fam187a 11 102885169 to 102886731 1562 + protein coding gene family with sequence similarity 187, member A
Gfap 11 102887336 to 102897200 9864 - protein coding gene glial fibrillary acidic protein
Tssr111109 11 102887706 to 102887717 11 - TSS region transcription start site region 111109
Tssr111110 11 102887787 to 102887798 11 - TSS region transcription start site region 111110
Tssr111111 11 102887847 to 102887860 13 - TSS region transcription start site region 111111
Tssr111112 11 102887940 to 102887949 9 - TSS region transcription start site region 111112
Tssr111113 11 102887988 to 102888001 13 - TSS region transcription start site region 111113
Tssr111114 11 102888056 to 102888071 15 - TSS region transcription start site region 111114
Tssr111115 11 102889462 to 102889478 16 - TSS region transcription start site region 111115
Cpgi3941 11 102892994 to 102893873 879 CpG island CpG island 3941
Tssr111116 11 102893134 to 102893145 11 - TSS region transcription start site region 111116
Tssr111117 11 102893513 to 102893531 18 - TSS region transcription start site region 111117
Tssr111118 11 102894534 to 102894543 9 - TSS region transcription start site region 111118
D11Nds7 11 102894911 to 102895067 156 DNA segment DNA segment, Chr 11, Nuffield Department of Surgery 7
Bolt 11 102894911 to 113919427 11024516 heritable phenotypic marker lightning bolt tail
Tssr111119 11 102895920 to 102895939 19 - TSS region transcription start site region 111119
Tssr111120 11 102895970 to 102895982 12 - TSS region transcription start site region 111120
Cpgi3942 11 102896729 to 102897138 409 CpG island CpG island 3942
Tssr105293 11 102896760 to 102896769 9 + TSS region transcription start site region 105293
Tssr111121 11 102897123 to 102897139 16 - TSS region transcription start site region 111121
Tssr111122 11 102897146 to 102897157 11 - TSS region transcription start site region 111122
Gm34560 11 102897656 to 102904476 6820 + lncRNA gene predicted gene, 34560