Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:102356609-102456622

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103 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc4a1 11 102348820 to 102365281 16461 - protein coding gene solute carrier family 4 (anion exchanger), member 1
Tssr111054 11 102356828 to 102356839 11 - TSS region transcription start site region 111054
Tssr111055 11 102356889 to 102356911 22 - TSS region transcription start site region 111055
Tssr111056 11 102357084 to 102357096 12 - TSS region transcription start site region 111056
Tssr111057 11 102357161 to 102357172 11 - TSS region transcription start site region 111057
Tssr111058 11 102358477 to 102358501 24 - TSS region transcription start site region 111058
Tssr111059 11 102360565 to 102360570 5 - TSS region transcription start site region 111059
Tssr105216 11 102361176 to 102361202 26 + TSS region transcription start site region 105216
Tssr111060 11 102361445 to 102361457 12 - TSS region transcription start site region 111060
Tssr111061 11 102363692 to 102363704 12 - TSS region transcription start site region 111061
Tssr111062 11 102365111 to 102365168 57 - TSS region transcription start site region 111062
Tssr3684 11 102365173 to 102365178 5 - TSS region transcription start site region 3684
Bloodlinc 11 102375551 to 102377020 1469 - lincRNA gene Bloodlinc, erythroid developmental long intergenic non-protein coding transcript
Cpgi3918 11 102375679 to 102375960 281 CpG island CpG island 3918
Gm34253 11 102376044 to 102381581 5537 + lncRNA gene predicted gene, 34253
Cpgi3919 11 102393054 to 102393945 891 CpG island CpG island 3919
Rundc3a 11 102393403 to 102402555 9152 + protein coding gene RUN domain containing 3A
Tssr105217 11 102393419 to 102393496 77 + TSS region transcription start site region 105217
Tssr105218 11 102393521 to 102393542 21 + TSS region transcription start site region 105218
Tssr105219 11 102393551 to 102393562 11 + TSS region transcription start site region 105219
Tssr105220 11 102393582 to 102393589 7 + TSS region transcription start site region 105220
Cpgi3920 11 102399249 to 102400233 984 CpG island CpG island 3920
Tssr105221 11 102399815 to 102399826 11 + TSS region transcription start site region 105221
Tssr105222 11 102399829 to 102399842 13 + TSS region transcription start site region 105222
Slc25a39 11 102402985 to 102407946 4961 - protein coding gene solute carrier family 25, member 39
Tssr111063 11 102403282 to 102403296 14 - TSS region transcription start site region 111063
Mir6930 11 102404920 to 102404987 67 - miRNA gene microRNA 6930
Tssr111064 11 102406609 to 102406622 13 - TSS region transcription start site region 111064
Tssr111065 11 102406742 to 102406752 10 - TSS region transcription start site region 111065
Tssr111066 11 102406766 to 102406782 16 - TSS region transcription start site region 111066
Tssr111067 11 102406783 to 102406828 45 - TSS region transcription start site region 111067
Cpgi3921 11 102406972 to 102408114 1142 CpG island CpG island 3921
Tssr111068 11 102407437 to 102407448 11 - TSS region transcription start site region 111068
Tssr111069 11 102407455 to 102407528 73 - TSS region transcription start site region 111069
Tssr105223 11 102407613 to 102407632 19 + TSS region transcription start site region 105223
Tssr105224 11 102407719 to 102407733 14 + TSS region transcription start site region 105224
Tssr111070 11 102407857 to 102407895 38 - TSS region transcription start site region 111070
Tssr111071 11 102407899 to 102407913 14 - TSS region transcription start site region 111071
Tssr111072 11 102407922 to 102407951 29 - TSS region transcription start site region 111072
Cpgi3922 11 102408292 to 102408811 519 CpG island CpG island 3922
Tssr111073 11 102408457 to 102408473 16 - TSS region transcription start site region 111073
Tssr105225 11 102429353 to 102429373 20 + TSS region transcription start site region 105225
Tssr111074 11 102430195 to 102430264 69 - TSS region transcription start site region 111074
Grn 11 102430322 to 102436809 6487 + protein coding gene granulin
Tssr105226 11 102430368 to 102430399 31 + TSS region transcription start site region 105226
Tssr105227 11 102430463 to 102430523 60 + TSS region transcription start site region 105227
Tssr105228 11 102432555 to 102432581 26 + TSS region transcription start site region 105228
Tssr105229 11 102432786 to 102432802 16 + TSS region transcription start site region 105229
Tssr105230 11 102432822 to 102432845 23 + TSS region transcription start site region 105230
Tssr105231 11 102432850 to 102432864 14 + TSS region transcription start site region 105231
Tssr105232 11 102432886 to 102432910 24 + TSS region transcription start site region 105232
Tssr105233 11 102433000 to 102433027 27 + TSS region transcription start site region 105233
Tssr105234 11 102433030 to 102433051 21 + TSS region transcription start site region 105234
Tssr105235 11 102433069 to 102433082 13 + TSS region transcription start site region 105235
Tssr105236 11 102433216 to 102433237 21 + TSS region transcription start site region 105236
Tssr105237 11 102433239 to 102433315 76 + TSS region transcription start site region 105237
Tssr105238 11 102433318 to 102433329 11 + TSS region transcription start site region 105238
Tssr105239 11 102433473 to 102433514 41 + TSS region transcription start site region 105239
Tssr105240 11 102433518 to 102433534 16 + TSS region transcription start site region 105240
Tssr105241 11 102433924 to 102433957 33 + TSS region transcription start site region 105241
Tssr105242 11 102433960 to 102433991 31 + TSS region transcription start site region 105242
Tssr111075 11 102433970 to 102433981 11 - TSS region transcription start site region 111075
Tssr105243 11 102434126 to 102434134 8 + TSS region transcription start site region 105243
Tssr105244 11 102434141 to 102434154 13 + TSS region transcription start site region 105244
Tssr105245 11 102434160 to 102434171 11 + TSS region transcription start site region 105245
Tssr105246 11 102434179 to 102434190 11 + TSS region transcription start site region 105246
Tssr105247 11 102434207 to 102434238 31 + TSS region transcription start site region 105247
Tssr105248 11 102434391 to 102434438 47 + TSS region transcription start site region 105248
Tssr105249 11 102434444 to 102434471 27 + TSS region transcription start site region 105249
Tssr105250 11 102434478 to 102434489 11 + TSS region transcription start site region 105250
Tssr105251 11 102434700 to 102434802 102 + TSS region transcription start site region 105251
Tssr105252 11 102435061 to 102435075 14 + TSS region transcription start site region 105252
Tssr105253 11 102435078 to 102435113 35 + TSS region transcription start site region 105253
Tssr105254 11 102435238 to 102435257 19 + TSS region transcription start site region 105254
Tssr105255 11 102435258 to 102435267 9 + TSS region transcription start site region 105255
Tssr111076 11 102435265 to 102435280 15 - TSS region transcription start site region 111076
Tssr105256 11 102435278 to 102435297 19 + TSS region transcription start site region 105256
Tssr105257 11 102435315 to 102435329 14 + TSS region transcription start site region 105257
Tssr105258 11 102435345 to 102435370 25 + TSS region transcription start site region 105258
Tssr111077 11 102435387 to 102435435 48 - TSS region transcription start site region 111077
Tssr105259 11 102435704 to 102435727 23 + TSS region transcription start site region 105259
Tssr105260 11 102435741 to 102435756 15 + TSS region transcription start site region 105260
Tssr105261 11 102435795 to 102435864 69 + TSS region transcription start site region 105261
Tssr105262 11 102435880 to 102435895 15 + TSS region transcription start site region 105262
Tssr105263 11 102436040 to 102436052 12 + TSS region transcription start site region 105263
Tssr105264 11 102436099 to 102436150 51 + TSS region transcription start site region 105264
Tssr111078 11 102436162 to 102436197 35 - TSS region transcription start site region 111078
Tssr105265 11 102436164 to 102436189 25 + TSS region transcription start site region 105265
Tssr105266 11 102436369 to 102436380 11 + TSS region transcription start site region 105266
Tssr105267 11 102436475 to 102436484 9 + TSS region transcription start site region 105267
Tssr105268 11 102436520 to 102436534 14 + TSS region transcription start site region 105268
Tssr111079 11 102436803 to 102436807 4 - TSS region transcription start site region 111079
Fam171a2 11 102436981 to 102447674 10693 - protein coding gene family with sequence similarity 171, member A2
Cpgi3923 11 102437047 to 102438945 1898 CpG island CpG island 3923
Tssr3685 11 102440615 to 102440618 3 + TSS region transcription start site region 3685
Tssr111080 11 102444796 to 102444803 7 - TSS region transcription start site region 111080
Cpgi3924 11 102446695 to 102448156 1461 CpG island CpG island 3924
Tssr111081 11 102447597 to 102447610 13 - TSS region transcription start site region 111081
Tssr111082 11 102447612 to 102447642 30 - TSS region transcription start site region 111082
Tssr111083 11 102447647 to 102447677 30 - TSS region transcription start site region 111083
Itga2b 11 102453297 to 102469883 16586 - protein coding gene integrin alpha 2b
Pbd1 11 102453297 to 112493297 10040000 QTL peak bone density 1
Cpgi3925 11 102455729 to 102456460 731 CpG island CpG island 3925