Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:102109480-102350535

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105 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm11584 11 102113249 to 102113573 324 - pseudogene predicted gene 11584
Gm39394 11 102122924 to 102134593 11669 + lncRNA gene predicted gene, 39394
Gm11585 11 102124072 to 102124640 568 + pseudogene predicted gene 11585
Cpgi3903 11 102138373 to 102138763 390 CpG island CpG island 3903
Cpgi3904 11 102145334 to 102148104 2770 CpG island CpG island 3904
Tssr105186 11 102145467 to 102145470 3 + TSS region transcription start site region 105186
Tssr105187 11 102145473 to 102145501 28 + TSS region transcription start site region 105187
Nags 11 102145513 to 102149477 3964 + protein coding gene N-acetylglutamate synthase
Tssr105188 11 102145530 to 102145541 11 + TSS region transcription start site region 105188
Gm11586 11 102145549 to 102146246 697 - antisense lncRNA gene predicted gene 11586
Tssr111002 11 102146240 to 102146260 20 - TSS region transcription start site region 111002
Tssr105189 11 102146339 to 102146383 44 + TSS region transcription start site region 105189
Tmem101 11 102152546 to 102156404 3858 - protein coding gene transmembrane protein 101
Cpgi3905 11 102155640 to 102156469 829 CpG island CpG island 3905
Tssr111003 11 102156339 to 102156414 75 - TSS region transcription start site region 111003
Lsm12 11 102162497 to 102185296 22799 - protein coding gene LSM12 homolog
Tssr111004 11 102162646 to 102162650 4 - TSS region transcription start site region 111004
Tssr111005 11 102163148 to 102163171 23 - TSS region transcription start site region 111005
Tssr111006 11 102163553 to 102163557 4 - TSS region transcription start site region 111006
Tssr111007 11 102163601 to 102163632 31 - TSS region transcription start site region 111007
Tssr105190 11 102163852 to 102163855 3 + TSS region transcription start site region 105190
Tssr111008 11 102164015 to 102164061 46 - TSS region transcription start site region 111008
Tssr111009 11 102167199 to 102167223 24 - TSS region transcription start site region 111009
Tssr111010 11 102177718 to 102177721 3 - TSS region transcription start site region 111010
Cpgi3906 11 102184513 to 102185431 918 CpG island CpG island 3906
Tssr111011 11 102185202 to 102185238 36 - TSS region transcription start site region 111011
Tssr111012 11 102185239 to 102185316 77 - TSS region transcription start site region 111012
Tssr105191 11 102185380 to 102185398 18 + TSS region transcription start site region 105191
Cpgi3907 11 102189465 to 102190101 636 CpG island CpG island 3907
Tssr105192 11 102189651 to 102189734 83 + TSS region transcription start site region 105192
G6pc3 11 102189699 to 102194081 4382 + protein coding gene glucose 6 phosphatase, catalytic, 3
Tssr105193 11 102189770 to 102189791 21 + TSS region transcription start site region 105193
Tssr105194 11 102189810 to 102189833 23 + TSS region transcription start site region 105194
Tssr105195 11 102189840 to 102189870 30 + TSS region transcription start site region 105195
Tssr105196 11 102192357 to 102192384 27 + TSS region transcription start site region 105196
Hdac5 11 102194432 to 102230166 35734 - protein coding gene histone deacetylase 5
Tssr111013 11 102216665 to 102216669 4 - TSS region transcription start site region 111013
Tssr105197 11 102216761 to 102216804 43 + TSS region transcription start site region 105197
Cpgi3908 11 102218493 to 102218784 291 CpG island CpG island 3908
Tssr111014 11 102218823 to 102218851 28 - TSS region transcription start site region 111014
Tssr111015 11 102218923 to 102218935 12 - TSS region transcription start site region 111015
Cpgi3909 11 102224733 to 102225098 365 CpG island CpG island 3909
Tssr111016 11 102224773 to 102224821 48 - TSS region transcription start site region 111016
Cpgi3910 11 102229480 to 102230535 1055 CpG island CpG island 3910
Mir8101 11 102230040 to 102230150 110 - miRNA gene microRNA 8101
Tssr111017 11 102230091 to 102230122 31 - TSS region transcription start site region 111017
Tssr111018 11 102230127 to 102230166 39 - TSS region transcription start site region 111018
Cpgi3911 11 102245043 to 102245515 472 CpG island CpG island 3911
Tssr105198 11 102245377 to 102245415 38 + TSS region transcription start site region 105198
Cpgi3912 11 102248749 to 102249301 552 CpG island CpG island 3912
Tssr105199 11 102248842 to 102248888 46 + TSS region transcription start site region 105199
BC030867 11 102248882 to 102265187 16305 + protein coding gene cDNA sequence BC030867
Tssr105200 11 102248891 to 102248937 46 + TSS region transcription start site region 105200
Tssr105201 11 102262221 to 102262230 9 + TSS region transcription start site region 105201
Tssr105202 11 102262240 to 102262252 12 + TSS region transcription start site region 105202
Tssr105203 11 102268732 to 102268761 29 + TSS region transcription start site region 105203
Tssr105204 11 102268769 to 102268778 9 + TSS region transcription start site region 105204
Tssr105205 11 102268779 to 102268788 9 + TSS region transcription start site region 105205
Asb16 11 102268823 to 102278061 9238 + protein coding gene ankyrin repeat and SOCS box-containing 16
Cpgi3913 11 102276323 to 102276910 587 CpG island CpG island 3913
Tssr105206 11 102276657 to 102276689 32 + TSS region transcription start site region 105206
Tssr105207 11 102276805 to 102276833 28 + TSS region transcription start site region 105207
Cpgi3914 11 102284568 to 102285548 980 CpG island CpG island 3914
Tmub2 11 102284931 to 102289237 4306 + protein coding gene transmembrane and ubiquitin-like domain containing 2
Tssr105208 11 102284932 to 102285033 101 + TSS region transcription start site region 105208
Tssr105209 11 102285161 to 102285251 90 + TSS region transcription start site region 105209
Atxn7l3 11 102289300 to 102296631 7331 - protein coding gene ataxin 7-like 3
Tssr105210 11 102295469 to 102295474 5 + TSS region transcription start site region 105210
Cpgi3915 11 102295618 to 102297878 2260 CpG island CpG island 3915
Tssr111019 11 102296256 to 102296316 60 - TSS region transcription start site region 111019
Tssr111020 11 102296618 to 102296681 63 - TSS region transcription start site region 111020
Tssr111021 11 102296751 to 102296812 61 - TSS region transcription start site region 111021
Gm33851 11 102296813 to 102297917 1104 + lncRNA gene predicted gene, 33851
Tssr111022 11 102296981 to 102296998 17 - TSS region transcription start site region 111022
Ubtf 11 102304560 to 102319742 15182 - protein coding gene upstream binding transcription factor, RNA polymerase I
Tssr111023 11 102306047 to 102306070 23 - TSS region transcription start site region 111023
Cpgi3916 11 102308867 to 102309492 625 CpG island CpG island 3916
Tssr105211 11 102309259 to 102309275 16 + TSS region transcription start site region 105211
Tssr105212 11 102309289 to 102309309 20 + TSS region transcription start site region 105212
Cpgi3917 11 102316349 to 102320727 4378 CpG island CpG island 3917
Tssr111024 11 102316607 to 102316646 39 - TSS region transcription start site region 111024
Tssr111025 11 102316660 to 102316678 18 - TSS region transcription start site region 111025
Tssr111026 11 102316691 to 102316708 17 - TSS region transcription start site region 111026
Tssr105213 11 102316848 to 102316859 11 + TSS region transcription start site region 105213
Tssr105214 11 102316874 to 102316969 95 + TSS region transcription start site region 105214
Tssr105215 11 102317004 to 102317015 11 + TSS region transcription start site region 105215
Tssr111027 11 102317623 to 102317642 19 - TSS region transcription start site region 111027
Tssr111028 11 102317760 to 102317785 25 - TSS region transcription start site region 111028
Tssr111029 11 102317787 to 102317816 29 - TSS region transcription start site region 111029
Tssr111030 11 102317860 to 102317877 17 - TSS region transcription start site region 111030
Tssr111031 11 102318036 to 102318061 25 - TSS region transcription start site region 111031
Tssr111032 11 102318941 to 102319004 63 - TSS region transcription start site region 111032
Tssr111033 11 102319093 to 102319105 12 - TSS region transcription start site region 111033
Tssr111034 11 102319342 to 102319349 7 - TSS region transcription start site region 111034
Tssr111035 11 102319382 to 102319446 64 - TSS region transcription start site region 111035
C030013E06Rik 11 102319788 to 102320242 454 unclassified gene RIKEN cDNA C030013E06 gene
Tssr111036 11 102319825 to 102319859 34 - TSS region transcription start site region 111036
Tssr111037 11 102320265 to 102320278 13 - TSS region transcription start site region 111037
Slc4a1 11 102348820 to 102365281 16461 - protein coding gene solute carrier family 4 (anion exchanger), member 1
Tssr111038 11 102349295 to 102349299 4 - TSS region transcription start site region 111038
Tssr111039 11 102349404 to 102349414 10 - TSS region transcription start site region 111039
Tssr111040 11 102349748 to 102349779 31 - TSS region transcription start site region 111040
Tssr111041 11 102349969 to 102349986 17 - TSS region transcription start site region 111041
Tssr111042 11 102350108 to 102350128 20 - TSS region transcription start site region 111042
Tssr111043 11 102350181 to 102350199 18 - TSS region transcription start site region 111043