Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:102026953-102187821

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mpp3 11 101999652 to 102027045 27393 - protein coding gene membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3)
Cpgi3895 11 102026288 to 102027420 1132 CpG island CpG island 3895
Tssr110986 11 102026924 to 102026962 38 - TSS region transcription start site region 110986
E130111B04Rik 11 102030268 to 102035084 4816 - antisense lncRNA gene RIKEN cDNA E130111B04 gene
Tssr105173 11 102041501 to 102041506 5 + TSS region transcription start site region 105173
Cd300lg 11 102041511 to 102055617 14106 + protein coding gene CD300 molecule like family member G
Tssr105174 11 102041520 to 102041531 11 + TSS region transcription start site region 105174
Tssr105175 11 102041532 to 102041581 49 + TSS region transcription start site region 105175
Tssr105176 11 102043146 to 102043182 36 + TSS region transcription start site region 105176
Gm39393 11 102049346 to 102052918 3572 - lncRNA gene predicted gene, 39393
Tssr105177 11 102050171 to 102050192 21 + TSS region transcription start site region 105177
Tssr110987 11 102051684 to 102051706 22 - TSS region transcription start site region 110987
Mpp2 11 102057015 to 102088515 31500 - protein coding gene membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)
Cpgi3896 11 102060699 to 102060968 269 CpG island CpG island 3896
Cpgi3897 11 102061441 to 102061618 177 CpG island CpG island 3897
Cpgi3898 11 102082342 to 102082517 175 CpG island CpG island 3898
Tssr110988 11 102082464 to 102082493 29 - TSS region transcription start site region 110988
Cpgi3899 11 102087078 to 102087760 682 CpG island CpG island 3899
Cpgi3900 11 102088056 to 102088830 774 CpG island CpG island 3900
Tssr110989 11 102088439 to 102088470 31 - TSS region transcription start site region 110989
Tssr110990 11 102088471 to 102088530 59 - TSS region transcription start site region 110990
Tssr110991 11 102088540 to 102088554 14 - TSS region transcription start site region 110991
Tssr105178 11 102096336 to 102096343 7 + TSS region transcription start site region 105178
Cpgi3901 11 102097169 to 102097456 287 CpG island CpG island 3901
Tssr105179 11 102097206 to 102097236 30 + TSS region transcription start site region 105179
Tssr105180 11 102097238 to 102097260 22 + TSS region transcription start site region 105180
Tssr105181 11 102097263 to 102097291 28 + TSS region transcription start site region 105181
Tssr3680 11 102097309 to 102097310 1 + TSS region transcription start site region 3680
Tssr110992 11 102097321 to 102097326 5 - TSS region transcription start site region 110992
Tssr3681 11 102097361 to 102097372 11 - TSS region transcription start site region 3681
Tssr3682 11 102097493 to 102097498 5 + TSS region transcription start site region 3682
Tssr105182 11 102097502 to 102097506 4 + TSS region transcription start site region 105182
Tssr105183 11 102097513 to 102097518 5 + TSS region transcription start site region 105183
Tssr110993 11 102097526 to 102097529 3 - TSS region transcription start site region 110993
Tssr110994 11 102097530 to 102097537 7 - TSS region transcription start site region 110994
Tssr110995 11 102097541 to 102097557 16 - TSS region transcription start site region 110995
Tssr105184 11 102097562 to 102097569 7 + TSS region transcription start site region 105184
Tssr110996 11 102097573 to 102097582 9 - TSS region transcription start site region 110996
Tssr3683 11 102097592 to 102097596 4 - TSS region transcription start site region 3683
Tssr110997 11 102097604 to 102097607 3 - TSS region transcription start site region 110997
Tssr105185 11 102097845 to 102097849 4 + TSS region transcription start site region 105185
Tssr110998 11 102097880 to 102097910 30 - TSS region transcription start site region 110998
Tssr110999 11 102097968 to 102097985 17 - TSS region transcription start site region 110999
Ppy 11 102099931 to 102101300 1369 - protein coding gene pancreatic polypeptide
D11Kyo1 11 102100321 to 102100538 217 DNA segment DNA segment, Chr 11, Kyoto University 1
Tssr111000 11 102101317 to 102101321 4 - TSS region transcription start site region 111000
Pyy 11 102106676 to 102107832 1156 - protein coding gene peptide YY
Cpgi3902 11 102106953 to 102107821 868 CpG island CpG island 3902
Tssr111001 11 102107823 to 102107838 15 - TSS region transcription start site region 111001
Gm11584 11 102113249 to 102113573 324 - pseudogene predicted gene 11584
Gm39394 11 102122924 to 102134593 11669 + lncRNA gene predicted gene, 39394
Gm11585 11 102124072 to 102124640 568 + pseudogene predicted gene 11585
Cpgi3903 11 102138373 to 102138763 390 CpG island CpG island 3903
Cpgi3904 11 102145334 to 102148104 2770 CpG island CpG island 3904
Tssr105186 11 102145467 to 102145470 3 + TSS region transcription start site region 105186
Tssr105187 11 102145473 to 102145501 28 + TSS region transcription start site region 105187
Nags 11 102145513 to 102149477 3964 + protein coding gene N-acetylglutamate synthase
Tssr105188 11 102145530 to 102145541 11 + TSS region transcription start site region 105188
Gm11586 11 102145549 to 102146246 697 - antisense lncRNA gene predicted gene 11586
Tssr111002 11 102146240 to 102146260 20 - TSS region transcription start site region 111002
Tssr105189 11 102146339 to 102146383 44 + TSS region transcription start site region 105189
Tmem101 11 102152546 to 102156404 3858 - protein coding gene transmembrane protein 101
Cpgi3905 11 102155640 to 102156469 829 CpG island CpG island 3905
Tssr111003 11 102156339 to 102156414 75 - TSS region transcription start site region 111003
Lsm12 11 102162497 to 102185296 22799 - protein coding gene LSM12 homolog
Tssr111004 11 102162646 to 102162650 4 - TSS region transcription start site region 111004
Tssr111005 11 102163148 to 102163171 23 - TSS region transcription start site region 111005
Tssr111006 11 102163553 to 102163557 4 - TSS region transcription start site region 111006
Tssr111007 11 102163601 to 102163632 31 - TSS region transcription start site region 111007
Tssr105190 11 102163852 to 102163855 3 + TSS region transcription start site region 105190
Tssr111008 11 102164015 to 102164061 46 - TSS region transcription start site region 111008
Tssr111009 11 102167199 to 102167223 24 - TSS region transcription start site region 111009
Tssr111010 11 102177718 to 102177721 3 - TSS region transcription start site region 111010
Cpgi3906 11 102184513 to 102185431 918 CpG island CpG island 3906
Tssr111011 11 102185202 to 102185238 36 - TSS region transcription start site region 111011
Tssr111012 11 102185239 to 102185316 77 - TSS region transcription start site region 111012
Tssr105191 11 102185380 to 102185398 18 + TSS region transcription start site region 105191