Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 11:101862458-102067015

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58 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi3887 11 101870022 to 101870434 412 CpG island CpG island 3887
Meox1 11 101877510 to 101894354 16844 - protein coding gene mesenchyme homeobox 1
Cpgi3888 11 101881671 to 101882065 394 CpG island CpG island 3888
Gm11551 11 101886237 to 101891206 4969 + lncRNA gene predicted gene 11551
D11Mit199 11 101887768 to 101887910 142 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 199
Tssr110975 11 101893699 to 101893780 81 - TSS region transcription start site region 110975
Tssr110976 11 101894355 to 101894372 17 - TSS region transcription start site region 110976
Tssr110977 11 101894396 to 101894401 5 - TSS region transcription start site region 110977
Cpgi3889 11 101928053 to 101928312 259 CpG island CpG island 3889
Gm33662 11 101929194 to 101938003 8809 - lncRNA gene predicted gene, 33662
Tssr105164 11 101936673 to 101936685 12 + TSS region transcription start site region 105164
Cpgi3890 11 101936959 to 101937661 702 CpG island CpG island 3890
Rpl27-ps2 11 101939501 to 101939899 398 + pseudogene ribosomal protein L27, pseudogene 2
D11Mit332 11 101940796 to 101940916 120 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 332
D11Mit146 11 101942438 to 101942579 141 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 146
Cpgi3891 11 101949407 to 101949563 156 CpG island CpG island 3891
4930417O22Rik 11 101952421 to 101960573 8152 + lncRNA gene RIKEN cDNA 4930417O22 gene
Sost 11 101962458 to 101967015 4557 - protein coding gene sclerostin
Cpgi3892 11 101963254 to 101964459 1205 CpG island CpG island 3892
Tssr110978 11 101967005 to 101967021 16 - TSS region transcription start site region 110978
Gm20659 11 101971143 to 101971859 716 + lncRNA gene predicted gene 20659
Dusp3 11 101971143 to 101987013 15870 - protein coding gene dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)
Tssr110979 11 101972942 to 101972959 17 - TSS region transcription start site region 110979
Tssr110980 11 101973959 to 101974009 50 - TSS region transcription start site region 110980
Cpgi3893 11 101974762 to 101975073 311 CpG island CpG island 3893
Cpgi3894 11 101984191 to 101985189 998 CpG island CpG island 3894
Tssr105165 11 101984238 to 101984248 10 + TSS region transcription start site region 105165
Tssr105166 11 101984255 to 101984268 13 + TSS region transcription start site region 105166
Tssr105167 11 101984270 to 101984289 19 + TSS region transcription start site region 105167
Tssr105168 11 101984291 to 101984303 12 + TSS region transcription start site region 105168
Tssr105169 11 101984343 to 101984354 11 + TSS region transcription start site region 105169
Tssr110981 11 101984728 to 101984741 13 - TSS region transcription start site region 110981
Tssr110982 11 101984749 to 101984798 49 - TSS region transcription start site region 110982
Tssr105170 11 101984885 to 101984901 16 + TSS region transcription start site region 105170
Tssr3679 11 101986956 to 101986957 1 - TSS region transcription start site region 3679
Tssr110983 11 101986963 to 101986974 11 - TSS region transcription start site region 110983
Tssr110984 11 101987004 to 101987013 9 - TSS region transcription start site region 110984
Tssr105171 11 101987050 to 101987069 19 + TSS region transcription start site region 105171
Cfap97d1 11 101987056 to 101992264 5208 + protein coding gene CFAP97 domain containing 1
Tssr105172 11 101987072 to 101987097 25 + TSS region transcription start site region 105172
Mpp3 11 101999652 to 102027045 27393 - protein coding gene membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3)
Tibl5 11 102000000 to 68300000 -33700000 QTL tibia length 5, 5 week
Femd3 11 102000000 to 81000000 -21000000 QTL femur midshaft diameter 3, 5 week
Cpgi3895 11 102026288 to 102027420 1132 CpG island CpG island 3895
Tssr110985 11 102026878 to 102026902 24 - TSS region transcription start site region 110985
Tssr110986 11 102026924 to 102026962 38 - TSS region transcription start site region 110986
E130111B04Rik 11 102030268 to 102035084 4816 - lncRNA gene RIKEN cDNA E130111B04 gene
Tssr105173 11 102041501 to 102041506 5 + TSS region transcription start site region 105173
Cd300lg 11 102041511 to 102055617 14106 + protein coding gene CD300 molecule like family member G
Tssr105174 11 102041520 to 102041531 11 + TSS region transcription start site region 105174
Tssr105175 11 102041532 to 102041581 49 + TSS region transcription start site region 105175
Tssr105176 11 102043146 to 102043182 36 + TSS region transcription start site region 105176
Gm39393 11 102049346 to 102053502 4156 - lncRNA gene predicted gene, 39393
Tssr105177 11 102050171 to 102050192 21 + TSS region transcription start site region 105177
Tssr110987 11 102051684 to 102051706 22 - TSS region transcription start site region 110987
Mpp2 11 102057015 to 102088515 31500 - protein coding gene membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)
Cpgi3896 11 102060699 to 102060968 269 CpG island CpG island 3896
Cpgi3897 11 102061441 to 102061618 177 CpG island CpG island 3897