Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:101494404-103204414

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621 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Brca1 11 101488764 to 101551955 63191 - protein coding gene breast cancer 1, early onset
D11Mit200 11 101545590 to 101545714 124 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 200
Cpgi3875 11 101551540 to 101553014 1474 CpG island CpG island 3875
Tssr110953 11 101551837 to 101551893 56 - TSS region transcription start site region 110953
Tssr105136 11 101552135 to 101552184 49 + TSS region transcription start site region 105136
Nbr1 11 101552149 to 101581951 29802 + protein coding gene NBR1, autophagy cargo receptor
Tssr105137 11 101552188 to 101552207 19 + TSS region transcription start site region 105137
Tssr105138 11 101552391 to 101552426 35 + TSS region transcription start site region 105138
Tssr105139 11 101552849 to 101552874 25 + TSS region transcription start site region 105139
Tssr105140 11 101553808 to 101553824 16 + TSS region transcription start site region 105140
D11Mit125 11 101558861 to 101559079 218 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 125
Tssr105141 11 101582236 to 101582312 76 + TSS region transcription start site region 105141
Tmem106a 11 101582242 to 101591788 9546 + protein coding gene transmembrane protein 106A
Tssr105142 11 101583416 to 101583476 60 + TSS region transcription start site region 105142
Tssr105143 11 101583484 to 101583494 10 + TSS region transcription start site region 105143
Tssr105144 11 101583573 to 101583593 20 + TSS region transcription start site region 105144
Tssr105145 11 101583611 to 101583630 19 + TSS region transcription start site region 105145
Tssr105146 11 101583722 to 101583733 11 + TSS region transcription start site region 105146
Tssr105147 11 101584437 to 101584477 40 + TSS region transcription start site region 105147
Tssr105148 11 101586232 to 101586322 90 + TSS region transcription start site region 105148
Tssr105149 11 101587915 to 101587964 49 + TSS region transcription start site region 105149
Tssr105150 11 101588906 to 101588924 18 + TSS region transcription start site region 105150
Tssr110954 11 101591782 to 101591786 4 - TSS region transcription start site region 110954
Gm11634 11 101593743 to 101599256 5513 - protein coding gene predicted gene 11634
Tssr3678 11 101593981 to 101593987 6 - TSS region transcription start site region 3678
Tssr110955 11 101599229 to 101599255 26 - TSS region transcription start site region 110955
Tssr110956 11 101599260 to 101599271 11 - TSS region transcription start site region 110956
Cpgi3876 11 101604558 to 101604848 290 CpG island CpG island 3876
Gm26316 11 101604850 to 101605040 190 + snRNA gene predicted gene, 26316
Cpgi3877 11 101610578 to 101610769 191 CpG island CpG island 3877
Gm11635 11 101610614 to 101615956 5342 + lincRNA gene predicted gene 11635
Tssr105151 11 101610648 to 101610662 14 + TSS region transcription start site region 105151
Tssr105152 11 101610686 to 101610693 7 + TSS region transcription start site region 105152
D11Nds2 11 101626367 to 101626505 138 DNA segment DNA segment, Chr 11, Nuffield Department of Surgery 2
Cpgi3878 11 101626897 to 101627337 440 CpG island CpG island 3878
Tssr110957 11 101626941 to 101626943 2 - TSS region transcription start site region 110957
Rdm1 11 101627242 to 101636089 8847 + protein coding gene RAD52 motif 1
Gm23849 11 101627366 to 101627556 190 + snRNA gene predicted gene, 23849
Cpgi3879 11 101627894 to 101628484 590 CpG island CpG island 3879
Tssr105153 11 101627943 to 101627972 29 + TSS region transcription start site region 105153
Tssr105154 11 101640046 to 101640051 5 + TSS region transcription start site region 105154
Cpgi3880 11 101641256 to 101641510 254 CpG island CpG island 3880
Gm24950 11 101641748 to 101641938 190 + snRNA gene predicted gene, 24950
Tssr105155 11 101642783 to 101642788 5 + TSS region transcription start site region 105155
Gm23971 11 101645740 to 101645930 190 - snRNA gene predicted gene, 23971
Cpgi3881 11 101646034 to 101646268 234 CpG island CpG island 3881
Cpgi3882 11 101657942 to 101658202 260 CpG island CpG island 3882
Rnu2-10 11 101658238 to 101658424 186 + snRNA gene U2 small nuclear RNA 10
Cpgi3883 11 101665284 to 101665963 679 CpG island CpG island 3883
Arl4d 11 101665541 to 101667832 2291 + protein coding gene ADP-ribosylation factor-like 4D
Tssr105156 11 101665554 to 101665572 18 + TSS region transcription start site region 105156
Tssr110958 11 101675465 to 101675496 31 - TSS region transcription start site region 110958
Tssr105157 11 101682857 to 101682869 12 + TSS region transcription start site region 105157
Gm39391 11 101696251 to 101697580 1329 + lncRNA gene predicted gene, 39391
Cpgi3884 11 101720008 to 101720421 413 CpG island CpG island 3884
D11Mit265 11 101728496 to 101728624 128 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 265
Cpgi3885 11 101732614 to 101733361 747 CpG island CpG island 3885
Tssr105158 11 101732900 to 101732903 3 + TSS region transcription start site region 105158
Tssr105159 11 101732952 to 101732965 13 + TSS region transcription start site region 105159
Dhx8 11 101732956 to 101767358 34402 + protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 8
Tssr105160 11 101732977 to 101733008 31 + TSS region transcription start site region 105160
Tssr105161 11 101733011 to 101733040 29 + TSS region transcription start site region 105161
Etv4 11 101769747 to 101785310 15563 - protein coding gene ets variant 4
Tssr110959 11 101770378 to 101770406 28 - TSS region transcription start site region 110959
Tssr110960 11 101771439 to 101771461 22 - TSS region transcription start site region 110960
Tssr110961 11 101774182 to 101774191 9 - TSS region transcription start site region 110961
Cpgi3886 11 101784066 to 101785808 1742 CpG island CpG island 3886
Tssr110962 11 101784285 to 101784318 33 - TSS region transcription start site region 110962
Tssr110963 11 101784322 to 101784350 28 - TSS region transcription start site region 110963
Tssr110964 11 101784427 to 101784441 14 - TSS region transcription start site region 110964
Tssr110965 11 101784460 to 101784481 21 - TSS region transcription start site region 110965
Tssr110966 11 101784516 to 101784567 51 - TSS region transcription start site region 110966
Tssr110967 11 101784608 to 101784637 29 - TSS region transcription start site region 110967
Tssr110968 11 101784666 to 101784675 9 - TSS region transcription start site region 110968
Tssr110969 11 101784813 to 101784833 20 - TSS region transcription start site region 110969
Tssr110970 11 101784841 to 101784856 15 - TSS region transcription start site region 110970
Tssr110971 11 101785166 to 101785182 16 - TSS region transcription start site region 110971
Tssr110972 11 101785202 to 101785220 18 - TSS region transcription start site region 110972
Tssr110973 11 101785225 to 101785241 16 - TSS region transcription start site region 110973
Tssr110974 11 101785252 to 101785289 37 - TSS region transcription start site region 110974
Gm39392 11 101785477 to 101789152 3675 + lncRNA gene predicted gene, 39392
Tssr105162 11 101787728 to 101787738 10 + TSS region transcription start site region 105162
Tssr105163 11 101787764 to 101787776 12 + TSS region transcription start site region 105163
Cpgi3887 11 101870022 to 101870434 412 CpG island CpG island 3887
Meox1 11 101877510 to 101894354 16844 - protein coding gene mesenchyme homeobox 1
Cpgi3888 11 101881671 to 101882065 394 CpG island CpG island 3888
Gm11551 11 101886237 to 101891206 4969 + antisense lncRNA gene predicted gene 11551
D11Mit199 11 101887768 to 101887910 142 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 199
Tssr110975 11 101893699 to 101893780 81 - TSS region transcription start site region 110975
Tssr110976 11 101894355 to 101894372 17 - TSS region transcription start site region 110976
Tssr110977 11 101894396 to 101894401 5 - TSS region transcription start site region 110977
Cpgi3889 11 101928053 to 101928312 259 CpG island CpG island 3889
Gm33662 11 101929194 to 101938528 9334 - lncRNA gene predicted gene, 33662
Tssr105164 11 101936673 to 101936685 12 + TSS region transcription start site region 105164
Cpgi3890 11 101936959 to 101937661 702 CpG island CpG island 3890
Rpl27-ps2 11 101939501 to 101939899 398 + pseudogene ribosomal protein L27, pseudogene 2
D11Mit332 11 101940796 to 101940916 120 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 332
D11Mit146 11 101942438 to 101942579 141 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 146
Cpgi3891 11 101949407 to 101949563 156 CpG island CpG island 3891
4930417O22Rik 11 101952421 to 101960573 8152 + antisense lncRNA gene RIKEN cDNA 4930417O22 gene
Sost 11 101962458 to 101967015 4557 - protein coding gene sclerostin
Cpgi3892 11 101963254 to 101964459 1205 CpG island CpG island 3892
Tssr110978 11 101967005 to 101967021 16 - TSS region transcription start site region 110978
Dusp3 11 101971141 to 101987005 15864 - protein coding gene dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)
Gm20659 11 101971143 to 101971859 716 + antisense lncRNA gene predicted gene 20659
Tssr110979 11 101972942 to 101972959 17 - TSS region transcription start site region 110979
Tssr110980 11 101973959 to 101974009 50 - TSS region transcription start site region 110980
Cpgi3893 11 101974762 to 101975073 311 CpG island CpG island 3893
Cpgi3894 11 101984191 to 101985189 998 CpG island CpG island 3894
Tssr105165 11 101984238 to 101984248 10 + TSS region transcription start site region 105165
Tssr105166 11 101984255 to 101984268 13 + TSS region transcription start site region 105166
Tssr105167 11 101984270 to 101984289 19 + TSS region transcription start site region 105167
Tssr105168 11 101984291 to 101984303 12 + TSS region transcription start site region 105168
Tssr105169 11 101984343 to 101984354 11 + TSS region transcription start site region 105169
Tssr110981 11 101984728 to 101984741 13 - TSS region transcription start site region 110981
Tssr110982 11 101984749 to 101984798 49 - TSS region transcription start site region 110982
Tssr105170 11 101984885 to 101984901 16 + TSS region transcription start site region 105170
Tssr3679 11 101986956 to 101986957 1 - TSS region transcription start site region 3679
Tssr110983 11 101986963 to 101986974 11 - TSS region transcription start site region 110983
Tssr110984 11 101987004 to 101987013 9 - TSS region transcription start site region 110984
Tssr105171 11 101987050 to 101987069 19 + TSS region transcription start site region 105171
Cfap97d1 11 101987056 to 101992264 5208 + protein coding gene CFAP97 domain containing 1
Tssr105172 11 101987072 to 101987097 25 + TSS region transcription start site region 105172
Mpp3 11 101999652 to 102027045 27393 - protein coding gene membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3)
Cpgi3895 11 102026288 to 102027420 1132 CpG island CpG island 3895
Tssr110985 11 102026878 to 102026902 24 - TSS region transcription start site region 110985
Tssr110986 11 102026924 to 102026962 38 - TSS region transcription start site region 110986
E130111B04Rik 11 102030268 to 102035084 4816 - antisense lncRNA gene RIKEN cDNA E130111B04 gene
Tssr105173 11 102041501 to 102041506 5 + TSS region transcription start site region 105173
Cd300lg 11 102041511 to 102055617 14106 + protein coding gene CD300 molecule like family member G
Tssr105174 11 102041520 to 102041531 11 + TSS region transcription start site region 105174
Tssr105175 11 102041532 to 102041581 49 + TSS region transcription start site region 105175
Tssr105176 11 102043146 to 102043182 36 + TSS region transcription start site region 105176
Gm39393 11 102049346 to 102052918 3572 - lncRNA gene predicted gene, 39393
Tssr105177 11 102050171 to 102050192 21 + TSS region transcription start site region 105177
Tssr110987 11 102051684 to 102051706 22 - TSS region transcription start site region 110987
Mpp2 11 102057015 to 102088515 31500 - protein coding gene membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)
Cpgi3896 11 102060699 to 102060968 269 CpG island CpG island 3896
Cpgi3897 11 102061441 to 102061618 177 CpG island CpG island 3897
Cpgi3898 11 102082342 to 102082517 175 CpG island CpG island 3898
Tssr110988 11 102082464 to 102082493 29 - TSS region transcription start site region 110988
Cpgi3899 11 102087078 to 102087760 682 CpG island CpG island 3899
Cpgi3900 11 102088056 to 102088830 774 CpG island CpG island 3900
Tssr110989 11 102088439 to 102088470 31 - TSS region transcription start site region 110989
Tssr110990 11 102088471 to 102088530 59 - TSS region transcription start site region 110990
Tssr110991 11 102088540 to 102088554 14 - TSS region transcription start site region 110991
Tssr105178 11 102096336 to 102096343 7 + TSS region transcription start site region 105178
Cpgi3901 11 102097169 to 102097456 287 CpG island CpG island 3901
Tssr105179 11 102097206 to 102097236 30 + TSS region transcription start site region 105179
Tssr105180 11 102097238 to 102097260 22 + TSS region transcription start site region 105180
Tssr105181 11 102097263 to 102097291 28 + TSS region transcription start site region 105181
Tssr3680 11 102097309 to 102097310 1 + TSS region transcription start site region 3680
Tssr110992 11 102097321 to 102097326 5 - TSS region transcription start site region 110992
Tssr3681 11 102097361 to 102097372 11 - TSS region transcription start site region 3681
Tssr3682 11 102097493 to 102097498 5 + TSS region transcription start site region 3682
Tssr105182 11 102097502 to 102097506 4 + TSS region transcription start site region 105182
Tssr105183 11 102097513 to 102097518 5 + TSS region transcription start site region 105183
Tssr110993 11 102097526 to 102097529 3 - TSS region transcription start site region 110993
Tssr110994 11 102097530 to 102097537 7 - TSS region transcription start site region 110994
Tssr110995 11 102097541 to 102097557 16 - TSS region transcription start site region 110995
Tssr105184 11 102097562 to 102097569 7 + TSS region transcription start site region 105184
Tssr110996 11 102097573 to 102097582 9 - TSS region transcription start site region 110996
Tssr3683 11 102097592 to 102097596 4 - TSS region transcription start site region 3683
Tssr110997 11 102097604 to 102097607 3 - TSS region transcription start site region 110997
Tssr105185 11 102097845 to 102097849 4 + TSS region transcription start site region 105185
Tssr110998 11 102097880 to 102097910 30 - TSS region transcription start site region 110998
Tssr110999 11 102097968 to 102097985 17 - TSS region transcription start site region 110999
Ppy 11 102099931 to 102101300 1369 - protein coding gene pancreatic polypeptide
D11Kyo1 11 102100321 to 102100538 217 DNA segment DNA segment, Chr 11, Kyoto University 1
Tssr111000 11 102101317 to 102101321 4 - TSS region transcription start site region 111000
Pyy 11 102106676 to 102107832 1156 - protein coding gene peptide YY
Cpgi3902 11 102106953 to 102107821 868 CpG island CpG island 3902
Tssr111001 11 102107823 to 102107838 15 - TSS region transcription start site region 111001
Gm11584 11 102113249 to 102113573 324 - pseudogene predicted gene 11584
Gm39394 11 102122924 to 102134593 11669 + lncRNA gene predicted gene, 39394
Gm11585 11 102124072 to 102124640 568 + pseudogene predicted gene 11585
Cpgi3903 11 102138373 to 102138763 390 CpG island CpG island 3903
Cpgi3904 11 102145334 to 102148104 2770 CpG island CpG island 3904
Tssr105186 11 102145467 to 102145470 3 + TSS region transcription start site region 105186
Tssr105187 11 102145473 to 102145501 28 + TSS region transcription start site region 105187
Nags 11 102145513 to 102149477 3964 + protein coding gene N-acetylglutamate synthase
Tssr105188 11 102145530 to 102145541 11 + TSS region transcription start site region 105188
Gm11586 11 102145549 to 102146246 697 - antisense lncRNA gene predicted gene 11586
Tssr111002 11 102146240 to 102146260 20 - TSS region transcription start site region 111002
Tssr105189 11 102146339 to 102146383 44 + TSS region transcription start site region 105189
Tmem101 11 102152546 to 102156404 3858 - protein coding gene transmembrane protein 101
Cpgi3905 11 102155640 to 102156469 829 CpG island CpG island 3905
Tssr111003 11 102156339 to 102156414 75 - TSS region transcription start site region 111003
Lsm12 11 102162497 to 102185296 22799 - protein coding gene LSM12 homolog
Tssr111004 11 102162646 to 102162650 4 - TSS region transcription start site region 111004
Tssr111005 11 102163148 to 102163171 23 - TSS region transcription start site region 111005
Tssr111006 11 102163553 to 102163557 4 - TSS region transcription start site region 111006
Tssr111007 11 102163601 to 102163632 31 - TSS region transcription start site region 111007
Tssr105190 11 102163852 to 102163855 3 + TSS region transcription start site region 105190
Tssr111008 11 102164015 to 102164061 46 - TSS region transcription start site region 111008
Tssr111009 11 102167199 to 102167223 24 - TSS region transcription start site region 111009
Tssr111010 11 102177718 to 102177721 3 - TSS region transcription start site region 111010
Cpgi3906 11 102184513 to 102185431 918 CpG island CpG island 3906
Tssr111011 11 102185202 to 102185238 36 - TSS region transcription start site region 111011
Tssr111012 11 102185239 to 102185316 77 - TSS region transcription start site region 111012