Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:101257641-101417645

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vps25 11 101253707 to 101259549 5842 + protein coding gene vacuolar protein sorting 25
Tssr105067 11 101259155 to 101259177 22 + TSS region transcription start site region 105067
Tssr105068 11 101259219 to 101259248 29 + TSS region transcription start site region 105068
Cpgi3861 11 101260190 to 101261268 1078 CpG island CpG island 3861
Tssr105069 11 101260549 to 101260560 11 + TSS region transcription start site region 105069
Wnk4 11 101260567 to 101277409 16842 + protein coding gene WNK lysine deficient protein kinase 4
Tssr105070 11 101260569 to 101260622 53 + TSS region transcription start site region 105070
Cpgi3862 11 101262558 to 101262909 351 CpG island CpG island 3862
Cpgi3863 11 101263688 to 101264062 374 CpG island CpG island 3863
Gm11615 11 101264762 to 101266303 1541 - antisense lncRNA gene predicted gene 11615
Cpgi3864 11 101264960 to 101265577 617 CpG island CpG island 3864
Tssr105071 11 101268779 to 101268785 6 + TSS region transcription start site region 105071
Cpgi3865 11 101276520 to 101276722 202 CpG island CpG island 3865
Coa3 11 101277970 to 101278948 978 - protein coding gene cytochrome C oxidase assembly factor 3
Cpgi3866 11 101278590 to 101279510 920 CpG island CpG island 3866
Tssr110921 11 101278927 to 101278969 42 - TSS region transcription start site region 110921
Tssr105072 11 101279092 to 101279111 19 + TSS region transcription start site region 105072
Tssr105073 11 101279112 to 101279147 35 + TSS region transcription start site region 105073
Tssr105074 11 101279157 to 101279188 31 + TSS region transcription start site region 105074
Cntd1 11 101279203 to 101288701 9498 + protein coding gene cyclin N-terminal domain containing 1
Becn1 11 101288262 to 101302290 14028 - protein coding gene beclin 1, autophagy related
Cpgi3867 11 101301743 to 101302482 739 CpG island CpG island 3867
Tssr110922 11 101302229 to 101302291 62 - TSS region transcription start site region 110922
Gm11617 11 101306742 to 101307380 638 + pseudogene predicted gene 11617
Cpgi3868 11 101315714 to 101316895 1181 CpG island CpG island 3868
Tssr105075 11 101316200 to 101316275 75 + TSS region transcription start site region 105075
Psme3 11 101316251 to 101323531 7280 + protein coding gene proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)
Tssr105076 11 101316836 to 101316890 54 + TSS region transcription start site region 105076
Tssr105077 11 101316917 to 101316927 10 + TSS region transcription start site region 105077
Tssr105078 11 101320723 to 101320737 14 + TSS region transcription start site region 105078
Tssr105079 11 101321883 to 101321916 33 + TSS region transcription start site region 105079
Tssr105080 11 101322054 to 101322095 41 + TSS region transcription start site region 105080
Tssr105081 11 101322172 to 101322189 17 + TSS region transcription start site region 105081
Tssr105082 11 101322572 to 101322591 19 + TSS region transcription start site region 105082
Tssr105083 11 101322846 to 101322897 51 + TSS region transcription start site region 105083
Tssr105084 11 101323033 to 101323064 31 + TSS region transcription start site region 105084
Aoc2 11 101325063 to 101329702 4639 + protein coding gene amine oxidase, copper containing 2 (retina-specific)
Aoc3 11 101330606 to 101339430 8824 + protein coding gene amine oxidase, copper containing 3
Tssr105085 11 101330773 to 101330795 22 + TSS region transcription start site region 105085
Tssr105086 11 101330810 to 101330820 10 + TSS region transcription start site region 105086
Tssr105087 11 101330832 to 101330858 26 + TSS region transcription start site region 105087
Tssr105088 11 101330863 to 101330874 11 + TSS region transcription start site region 105088
Tssr105089 11 101330879 to 101330886 7 + TSS region transcription start site region 105089
Tssr105090 11 101337641 to 101337645 4 + TSS region transcription start site region 105090
Tssr105091 11 101337762 to 101337777 15 + TSS region transcription start site region 105091
Tssr110923 11 101338011 to 101338039 28 - TSS region transcription start site region 110923
Tssr105092 11 101338237 to 101338266 29 + TSS region transcription start site region 105092
Gm28156 11 101339660 to 101347939 8279 - antisense lncRNA gene predicted gene 28156
4931418L13Rik 11 101347972 to 101348572 600 unclassified gene RIKEN cDNA 4931418L13 gene
Tssr105093 11 101348012 to 101348019 7 + TSS region transcription start site region 105093
Gm11618 11 101352236 to 101353139 903 + pseudogene predicted gene 11618
Gm11619 11 101353309 to 101353545 236 - pseudogene predicted gene 11619
Gm25593 11 101353342 to 101353437 95 - miRNA gene predicted gene, 25593
Tssr105094 11 101367542 to 101367565 23 + TSS region transcription start site region 105094
Tssr105095 11 101367709 to 101367724 15 + TSS region transcription start site region 105095
G6pc 11 101367716 to 101377903 10187 + protein coding gene glucose-6-phosphatase, catalytic
Tssr105096 11 101370713 to 101370723 10 + TSS region transcription start site region 105096
Tssr105097 11 101373994 to 101374012 18 + TSS region transcription start site region 105097
Tssr105098 11 101374653 to 101374673 20 + TSS region transcription start site region 105098
Tssr3676 11 101376302 to 101376331 29 + TSS region transcription start site region 3676
Tssr105099 11 101376474 to 101376488 14 + TSS region transcription start site region 105099
Tssr105100 11 101376623 to 101376630 7 + TSS region transcription start site region 105100
Tssr105101 11 101376634 to 101376643 9 + TSS region transcription start site region 105101
Tssr105102 11 101376657 to 101376670 13 + TSS region transcription start site region 105102
Tssr105103 11 101377172 to 101377181 9 + TSS region transcription start site region 105103
Tssr105104 11 101377186 to 101377192 6 + TSS region transcription start site region 105104
Tssr105105 11 101377203 to 101377211 8 + TSS region transcription start site region 105105
Tssr105106 11 101377221 to 101377231 10 + TSS region transcription start site region 105106
Tssr105107 11 101377306 to 101377314 8 + TSS region transcription start site region 105107
Tssr3677 11 101396181 to 101396195 14 + TSS region transcription start site region 3677
Gm25475 11 101397589 to 101397768 179 - snRNA gene predicted gene, 25475
Gm27029 11 101406664 to 101424796 18132 - protein coding gene predicted gene, 27029
Aarsd1 11 101406665 to 101417433 10768 - protein coding gene alanyl-tRNA synthetase domain containing 1
Cpgi3869 11 101416989 to 101417641 652 CpG island CpG island 3869
Tssr110924 11 101417392 to 101417407 15 - TSS region transcription start site region 110924
Tssr110925 11 101417415 to 101417427 12 - TSS region transcription start site region 110925