Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:101256226-101696521

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199 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vps25 11 101253707 to 101259549 5842 + protein coding gene vacuolar protein sorting 25
Tssr105067 11 101259155 to 101259177 22 + TSS region transcription start site region 105067
Tssr105068 11 101259219 to 101259248 29 + TSS region transcription start site region 105068
Cpgi3861 11 101260190 to 101261268 1078 CpG island CpG island 3861
Tssr105069 11 101260549 to 101260560 11 + TSS region transcription start site region 105069
Wnk4 11 101260567 to 101277409 16842 + protein coding gene WNK lysine deficient protein kinase 4
Tssr105070 11 101260569 to 101260622 53 + TSS region transcription start site region 105070
Cpgi3862 11 101262558 to 101262909 351 CpG island CpG island 3862
Cpgi3863 11 101263688 to 101264062 374 CpG island CpG island 3863
Gm11615 11 101264762 to 101266303 1541 - antisense lncRNA gene predicted gene 11615
Cpgi3864 11 101264960 to 101265577 617 CpG island CpG island 3864
Tssr105071 11 101268779 to 101268785 6 + TSS region transcription start site region 105071
Cpgi3865 11 101276520 to 101276722 202 CpG island CpG island 3865
Coa3 11 101277970 to 101278948 978 - protein coding gene cytochrome C oxidase assembly factor 3
Cpgi3866 11 101278590 to 101279510 920 CpG island CpG island 3866
Tssr110921 11 101278927 to 101278969 42 - TSS region transcription start site region 110921
Tssr105072 11 101279092 to 101279111 19 + TSS region transcription start site region 105072
Tssr105073 11 101279112 to 101279147 35 + TSS region transcription start site region 105073
Tssr105074 11 101279157 to 101279188 31 + TSS region transcription start site region 105074
Cntd1 11 101279203 to 101288701 9498 + protein coding gene cyclin N-terminal domain containing 1
Becn1 11 101288262 to 101302290 14028 - protein coding gene beclin 1, autophagy related
Cpgi3867 11 101301743 to 101302482 739 CpG island CpG island 3867
Tssr110922 11 101302229 to 101302291 62 - TSS region transcription start site region 110922
Gm11617 11 101306742 to 101307380 638 + pseudogene predicted gene 11617
Cpgi3868 11 101315714 to 101316895 1181 CpG island CpG island 3868
Tssr105075 11 101316200 to 101316275 75 + TSS region transcription start site region 105075
Psme3 11 101316251 to 101323531 7280 + protein coding gene proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)
Tssr105076 11 101316836 to 101316890 54 + TSS region transcription start site region 105076
Tssr105077 11 101316917 to 101316927 10 + TSS region transcription start site region 105077
Tssr105078 11 101320723 to 101320737 14 + TSS region transcription start site region 105078
Tssr105079 11 101321883 to 101321916 33 + TSS region transcription start site region 105079
Tssr105080 11 101322054 to 101322095 41 + TSS region transcription start site region 105080
Tssr105081 11 101322172 to 101322189 17 + TSS region transcription start site region 105081
Tssr105082 11 101322572 to 101322591 19 + TSS region transcription start site region 105082
Tssr105083 11 101322846 to 101322897 51 + TSS region transcription start site region 105083
Tssr105084 11 101323033 to 101323064 31 + TSS region transcription start site region 105084
Aoc2 11 101325063 to 101329702 4639 + protein coding gene amine oxidase, copper containing 2 (retina-specific)
Aoc3 11 101330606 to 101339430 8824 + protein coding gene amine oxidase, copper containing 3
Tssr105085 11 101330773 to 101330795 22 + TSS region transcription start site region 105085
Tssr105086 11 101330810 to 101330820 10 + TSS region transcription start site region 105086
Tssr105087 11 101330832 to 101330858 26 + TSS region transcription start site region 105087
Tssr105088 11 101330863 to 101330874 11 + TSS region transcription start site region 105088
Tssr105089 11 101330879 to 101330886 7 + TSS region transcription start site region 105089
Tssr105090 11 101337641 to 101337645 4 + TSS region transcription start site region 105090
Tssr105091 11 101337762 to 101337777 15 + TSS region transcription start site region 105091
Tssr110923 11 101338011 to 101338039 28 - TSS region transcription start site region 110923
Tssr105092 11 101338237 to 101338266 29 + TSS region transcription start site region 105092
Gm28156 11 101339660 to 101347939 8279 - antisense lncRNA gene predicted gene 28156
4931418L13Rik 11 101347972 to 101348572 600 unclassified gene RIKEN cDNA 4931418L13 gene
Tssr105093 11 101348012 to 101348019 7 + TSS region transcription start site region 105093
Gm11618 11 101352236 to 101353139 903 + pseudogene predicted gene 11618
Gm11619 11 101353309 to 101353545 236 - pseudogene predicted gene 11619
Gm25593 11 101353342 to 101353437 95 - miRNA gene predicted gene, 25593
Tssr105094 11 101367542 to 101367565 23 + TSS region transcription start site region 105094
Tssr105095 11 101367709 to 101367724 15 + TSS region transcription start site region 105095
G6pc 11 101367716 to 101377903 10187 + protein coding gene glucose-6-phosphatase, catalytic
Tssr105096 11 101370713 to 101370723 10 + TSS region transcription start site region 105096
Tssr105097 11 101373994 to 101374012 18 + TSS region transcription start site region 105097
Tssr105098 11 101374653 to 101374673 20 + TSS region transcription start site region 105098
Tssr3676 11 101376302 to 101376331 29 + TSS region transcription start site region 3676
Tssr105099 11 101376474 to 101376488 14 + TSS region transcription start site region 105099
Tssr105100 11 101376623 to 101376630 7 + TSS region transcription start site region 105100
Tssr105101 11 101376634 to 101376643 9 + TSS region transcription start site region 105101
Tssr105102 11 101376657 to 101376670 13 + TSS region transcription start site region 105102
Tssr105103 11 101377172 to 101377181 9 + TSS region transcription start site region 105103
Tssr105104 11 101377186 to 101377192 6 + TSS region transcription start site region 105104
Tssr105105 11 101377203 to 101377211 8 + TSS region transcription start site region 105105
Tssr105106 11 101377221 to 101377231 10 + TSS region transcription start site region 105106
Tssr105107 11 101377306 to 101377314 8 + TSS region transcription start site region 105107
Tssr3677 11 101396181 to 101396195 14 + TSS region transcription start site region 3677
Gm25475 11 101397589 to 101397768 179 - snRNA gene predicted gene, 25475
Gm27029 11 101406664 to 101424796 18132 - protein coding gene predicted gene, 27029
Aarsd1 11 101406665 to 101417433 10768 - protein coding gene alanyl-tRNA synthetase domain containing 1
Cpgi3869 11 101416989 to 101417641 652 CpG island CpG island 3869
Tssr110924 11 101417392 to 101417407 15 - TSS region transcription start site region 110924
Tssr110925 11 101417415 to 101417427 12 - TSS region transcription start site region 110925
Ptges3l 11 101418812 to 101425333 6521 - protein coding gene prostaglandin E synthase 3 like
Mir6929 11 101419187 to 101419253 66 - miRNA gene microRNA 6929
Tssr110926 11 101424630 to 101424675 45 - TSS region transcription start site region 110926
Cpgi3870 11 101424949 to 101425877 928 CpG island CpG island 3870
Tssr105108 11 101425068 to 101425114 46 + TSS region transcription start site region 105108
Rundc1 11 101425085 to 101435666 10581 + protein coding gene RUN domain containing 1
Tssr110927 11 101425330 to 101425388 58 - TSS region transcription start site region 110927
Tssr110928 11 101425615 to 101425642 27 - TSS region transcription start site region 110928
Cpgi3871 11 101442117 to 101442880 763 CpG island CpG island 3871
Tssr105109 11 101442289 to 101442294 5 + TSS region transcription start site region 105109
Rpl27 11 101442298 to 101445529 3231 + protein coding gene ribosomal protein L27
Tssr105110 11 101442367 to 101442378 11 + TSS region transcription start site region 105110
Tssr105111 11 101442379 to 101442395 16 + TSS region transcription start site region 105111
Tssr105112 11 101442401 to 101442410 9 + TSS region transcription start site region 105112
Tssr105113 11 101442412 to 101442439 27 + TSS region transcription start site region 105113
Tssr105114 11 101442440 to 101442468 28 + TSS region transcription start site region 105114
Tssr105115 11 101442480 to 101442494 14 + TSS region transcription start site region 105115
Tssr105116 11 101442522 to 101442531 9 + TSS region transcription start site region 105116
Tssr105117 11 101442677 to 101442684 7 + TSS region transcription start site region 105117
Tssr105118 11 101442693 to 101442718 25 + TSS region transcription start site region 105118
Tssr105119 11 101448403 to 101448487 84 + TSS region transcription start site region 105119
Ifi35 11 101448412 to 101458701 10289 + protein coding gene interferon-induced protein 35
Gm11626 11 101456576 to 101457390 814 - antisense lncRNA gene predicted gene 11626
Vat1 11 101458748 to 101466199 7451 - protein coding gene vesicle amine transport 1
Tssr110929 11 101459246 to 101459277 31 - TSS region transcription start site region 110929
Tssr110930 11 101459284 to 101459302 18 - TSS region transcription start site region 110930
Tssr110931 11 101459356 to 101459369 13 - TSS region transcription start site region 110931
Tssr110932 11 101459523 to 101459534 11 - TSS region transcription start site region 110932
Tssr110933 11 101459699 to 101459726 27 - TSS region transcription start site region 110933
Tssr105120 11 101459724 to 101459766 42 + TSS region transcription start site region 105120
Tssr110934 11 101459734 to 101459749 15 - TSS region transcription start site region 110934
Tssr110935 11 101459773 to 101459807 34 - TSS region transcription start site region 110935
Tssr110936 11 101459895 to 101459923 28 - TSS region transcription start site region 110936
Tssr110937 11 101459995 to 101460009 14 - TSS region transcription start site region 110937
Tssr105121 11 101460000 to 101460013 13 + TSS region transcription start site region 105121
Tssr105122 11 101460041 to 101460053 12 + TSS region transcription start site region 105122
Tssr105123 11 101460083 to 101460098 15 + TSS region transcription start site region 105123
Tssr110938 11 101460084 to 101460102 18 - TSS region transcription start site region 110938
Tssr105124 11 101460124 to 101460140 16 + TSS region transcription start site region 105124
Tssr105125 11 101460223 to 101460237 14 + TSS region transcription start site region 105125
Tssr110939 11 101460438 to 101460481 43 - TSS region transcription start site region 110939
Tssr110940 11 101460483 to 101460544 61 - TSS region transcription start site region 110940
Tssr110941 11 101462232 to 101462250 18 - TSS region transcription start site region 110941
Tssr110942 11 101462432 to 101462472 40 - TSS region transcription start site region 110942
Tssr110943 11 101462543 to 101462561 18 - TSS region transcription start site region 110943
Tssr110944 11 101462709 to 101462732 23 - TSS region transcription start site region 110944
Tssr110945 11 101462734 to 101462750 16 - TSS region transcription start site region 110945
Cpgi3872 11 101464984 to 101466427 1443 CpG island CpG island 3872
Tssr110946 11 101465190 to 101465222 32 - TSS region transcription start site region 110946
Tssr105126 11 101465302 to 101465317 15 + TSS region transcription start site region 105126
Tssr105127 11 101465478 to 101465499 21 + TSS region transcription start site region 105127
Tssr110947 11 101465927 to 101465959 32 - TSS region transcription start site region 110947
Tssr110948 11 101466136 to 101466150 14 - TSS region transcription start site region 110948
Tssr110949 11 101466158 to 101466216 58 - TSS region transcription start site region 110949
Tssr110950 11 101466222 to 101466237 15 - TSS region transcription start site region 110950
Tssr110951 11 101466248 to 101466257 9 - TSS region transcription start site region 110951
Cpgi3873 11 101467253 to 101467427 174 CpG island CpG island 3873
Cpgi3874 11 101467625 to 101469052 1427 CpG island CpG island 3874
Tssr110952 11 101468024 to 101468066 42 - TSS region transcription start site region 110952
Tssr105128 11 101468138 to 101468149 11 + TSS region transcription start site region 105128
Tssr105129 11 101468164 to 101468175 11 + TSS region transcription start site region 105129
Tssr105130 11 101468181 to 101468192 11 + TSS region transcription start site region 105130
Tssr105131 11 101468200 to 101468235 35 + TSS region transcription start site region 105131
Tssr105132 11 101468236 to 101468249 13 + TSS region transcription start site region 105132
Tssr105133 11 101468333 to 101468354 21 + TSS region transcription start site region 105133
Rnd2 11 101468338 to 101471306 2968 + protein coding gene Rho family GTPase 2
Tssr105134 11 101468355 to 101468373 18 + TSS region transcription start site region 105134
Tssr105135 11 101469376 to 101469382 6 + TSS region transcription start site region 105135
Gm11625 11 101476226 to 101476521 295 + pseudogene predicted gene 11625
Brca1 11 101488764 to 101551955 63191 - protein coding gene breast cancer 1, early onset
D11Mit200 11 101545590 to 101545714 124 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 200
Cpgi3875 11 101551540 to 101553014 1474 CpG island CpG island 3875
Tssr110953 11 101551837 to 101551893 56 - TSS region transcription start site region 110953
Tssr105136 11 101552135 to 101552184 49 + TSS region transcription start site region 105136
Nbr1 11 101552149 to 101581951 29802 + protein coding gene NBR1, autophagy cargo receptor
Tssr105137 11 101552188 to 101552207 19 + TSS region transcription start site region 105137
Tssr105138 11 101552391 to 101552426 35 + TSS region transcription start site region 105138
Tssr105139 11 101552849 to 101552874 25 + TSS region transcription start site region 105139
Tssr105140 11 101553808 to 101553824 16 + TSS region transcription start site region 105140
D11Mit125 11 101558861 to 101559079 218 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 125
Tssr105141 11 101582236 to 101582312 76 + TSS region transcription start site region 105141
Tmem106a 11 101582242 to 101591788 9546 + protein coding gene transmembrane protein 106A
Tssr105142 11 101583416 to 101583476 60 + TSS region transcription start site region 105142
Tssr105143 11 101583484 to 101583494 10 + TSS region transcription start site region 105143
Tssr105144 11 101583573 to 101583593 20 + TSS region transcription start site region 105144
Tssr105145 11 101583611 to 101583630 19 + TSS region transcription start site region 105145
Tssr105146 11 101583722 to 101583733 11 + TSS region transcription start site region 105146
Tssr105147 11 101584437 to 101584477 40 + TSS region transcription start site region 105147
Tssr105148 11 101586232 to 101586322 90 + TSS region transcription start site region 105148
Tssr105149 11 101587915 to 101587964 49 + TSS region transcription start site region 105149
Tssr105150 11 101588906 to 101588924 18 + TSS region transcription start site region 105150
Tssr110954 11 101591782 to 101591786 4 - TSS region transcription start site region 110954
Gm11634 11 101593743 to 101599256 5513 - protein coding gene predicted gene 11634
Tssr3678 11 101593981 to 101593987 6 - TSS region transcription start site region 3678
Tssr110955 11 101599229 to 101599255 26 - TSS region transcription start site region 110955
Tssr110956 11 101599260 to 101599271 11 - TSS region transcription start site region 110956
Cpgi3876 11 101604558 to 101604848 290 CpG island CpG island 3876
Gm26316 11 101604850 to 101605040 190 + snRNA gene predicted gene, 26316
Cpgi3877 11 101610578 to 101610769 191 CpG island CpG island 3877
Gm11635 11 101610614 to 101615956 5342 + lincRNA gene predicted gene 11635
Tssr105151 11 101610648 to 101610662 14 + TSS region transcription start site region 105151
Tssr105152 11 101610686 to 101610693 7 + TSS region transcription start site region 105152
D11Nds2 11 101626367 to 101626505 138 DNA segment DNA segment, Chr 11, Nuffield Department of Surgery 2
Cpgi3878 11 101626897 to 101627337 440 CpG island CpG island 3878
Tssr110957 11 101626941 to 101626943 2 - TSS region transcription start site region 110957
Rdm1 11 101627242 to 101636089 8847 + protein coding gene RAD52 motif 1
Gm23849 11 101627366 to 101627556 190 + snRNA gene predicted gene, 23849
Cpgi3879 11 101627894 to 101628484 590 CpG island CpG island 3879
Tssr105153 11 101627943 to 101627972 29 + TSS region transcription start site region 105153
Tssr105154 11 101640046 to 101640051 5 + TSS region transcription start site region 105154
Cpgi3880 11 101641256 to 101641510 254 CpG island CpG island 3880
Gm24950 11 101641748 to 101641938 190 + snRNA gene predicted gene, 24950
Tssr105155 11 101642783 to 101642788 5 + TSS region transcription start site region 105155
Gm23971 11 101645740 to 101645930 190 - snRNA gene predicted gene, 23971
Cpgi3881 11 101646034 to 101646268 234 CpG island CpG island 3881
Cpgi3882 11 101657942 to 101658202 260 CpG island CpG island 3882
Rnu2-10 11 101658238 to 101658424 186 + snRNA gene U2 small nuclear RNA 10
Cpgi3883 11 101665284 to 101665963 679 CpG island CpG island 3883
Arl4d 11 101665541 to 101667832 2291 + protein coding gene ADP-ribosylation factor-like 4D
Tssr105156 11 101665554 to 101665572 18 + TSS region transcription start site region 105156
Tssr110958 11 101675465 to 101675496 31 - TSS region transcription start site region 110958
Tssr105157 11 101682857 to 101682869 12 + TSS region transcription start site region 105157
Gm39391 11 101696251 to 101697580 1329 + lncRNA gene predicted gene, 39391