Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:101146334-101348250

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95 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi3849 11 101155685 to 101156401 716 CpG island CpG island 3849
Tssr105049 11 101155884 to 101155921 37 + TSS region transcription start site region 105049
Tubg2 11 101155907 to 101161787 5880 + protein coding gene tubulin, gamma 2
Tssr105050 11 101155968 to 101156040 72 + TSS region transcription start site region 105050
Plekhh3 11 101162679 to 101171351 8672 - protein coding gene pleckstrin homology domain containing, family H (with MyTH4 domain) member 3
Cpgi3850 11 101163528 to 101164813 1285 CpG island CpG island 3850
Cpgi3851 11 101170214 to 101171516 1302 CpG island CpG island 3851
Tssr110915 11 101170327 to 101170334 7 - TSS region transcription start site region 110915
Tssr110916 11 101171196 to 101171207 11 - TSS region transcription start site region 110916
Tssr110917 11 101171302 to 101171353 51 - TSS region transcription start site region 110917
Cpgi3852 11 101171971 to 101172544 573 CpG island CpG island 3852
Ccr10 11 101172998 to 101175443 2445 - protein coding gene chemokine (C-C motif) receptor 10
Cpgi3853 11 101173445 to 101174633 1188 CpG island CpG island 3853
Cntnap1 11 101174649 to 101190723 16074 + protein coding gene contactin associated protein-like 1
Tssr110918 11 101175440 to 101175444 4 - TSS region transcription start site region 110918
Cpgi3854 11 101176127 to 101176617 490 CpG island CpG island 3854
Tssr3674 11 101176193 to 101176247 54 + TSS region transcription start site region 3674
Cpgi3855 11 101177974 to 101178372 398 CpG island CpG island 3855
Tssr105051 11 101180094 to 101180101 7 + TSS region transcription start site region 105051
Cpgi3856 11 101180328 to 101180493 165 CpG island CpG island 3856
Tssr105052 11 101181329 to 101181378 49 + TSS region transcription start site region 105052
Cpgi3857 11 101186526 to 101186725 199 CpG island CpG island 3857
Tssr105053 11 101188274 to 101188303 29 + TSS region transcription start site region 105053
Ezh1 11 101191115 to 101226463 35348 - protein coding gene enhancer of zeste 1 polycomb repressive complex 2 subunit
Cpgi3858 11 101225855 to 101226685 830 CpG island CpG island 3858
Tssr110919 11 101226414 to 101226455 41 - TSS region transcription start site region 110919
Tssr110920 11 101232294 to 101232335 41 - TSS region transcription start site region 110920
D830013H23Rik 11 101245105 to 101246745 1640 unclassified gene RIKEN cDNA D830013H23 gene
Cpgi3859 11 101245956 to 101246887 931 CpG island CpG island 3859
Tssr105054 11 101245996 to 101246044 48 + TSS region transcription start site region 105054
Tssr105055 11 101246047 to 101246058 11 + TSS region transcription start site region 105055
Tssr105056 11 101246063 to 101246068 5 + TSS region transcription start site region 105056
Tssr105057 11 101246329 to 101246332 3 + TSS region transcription start site region 105057
Ramp2 11 101246334 to 101248250 1916 + protein coding gene receptor (calcitonin) activity modifying protein 2
Tssr105058 11 101246345 to 101246350 5 + TSS region transcription start site region 105058
Tssr105059 11 101246356 to 101246370 14 + TSS region transcription start site region 105059
Tssr105060 11 101246383 to 101246391 8 + TSS region transcription start site region 105060
Tssr105061 11 101246405 to 101246422 17 + TSS region transcription start site region 105061
Tssr105062 11 101246924 to 101246935 11 + TSS region transcription start site region 105062
Tssr3675 11 101246937 to 101246957 20 + TSS region transcription start site region 3675
Tssr105063 11 101246960 to 101246981 21 + TSS region transcription start site region 105063
Tssr105064 11 101253573 to 101253594 21 + TSS region transcription start site region 105064
Cpgi3860 11 101253581 to 101254233 652 CpG island CpG island 3860
Vps25 11 101253707 to 101259549 5842 + protein coding gene vacuolar protein sorting 25
Tssr105065 11 101253720 to 101253757 37 + TSS region transcription start site region 105065
Tssr105066 11 101255718 to 101255724 6 + TSS region transcription start site region 105066
Tssr105067 11 101259155 to 101259177 22 + TSS region transcription start site region 105067
Tssr105068 11 101259219 to 101259248 29 + TSS region transcription start site region 105068
Cpgi3861 11 101260190 to 101261268 1078 CpG island CpG island 3861
Tssr105069 11 101260549 to 101260560 11 + TSS region transcription start site region 105069
Wnk4 11 101260567 to 101277409 16842 + protein coding gene WNK lysine deficient protein kinase 4
Tssr105070 11 101260569 to 101260622 53 + TSS region transcription start site region 105070
Cpgi3862 11 101262558 to 101262909 351 CpG island CpG island 3862
Cpgi3863 11 101263688 to 101264062 374 CpG island CpG island 3863
Gm11615 11 101264762 to 101266303 1541 - antisense lncRNA gene predicted gene 11615
Cpgi3864 11 101264960 to 101265577 617 CpG island CpG island 3864
Tssr105071 11 101268779 to 101268785 6 + TSS region transcription start site region 105071
Cpgi3865 11 101276520 to 101276722 202 CpG island CpG island 3865
Coa3 11 101277970 to 101278948 978 - protein coding gene cytochrome C oxidase assembly factor 3
Cpgi3866 11 101278590 to 101279510 920 CpG island CpG island 3866
Tssr110921 11 101278927 to 101278969 42 - TSS region transcription start site region 110921
Tssr105072 11 101279092 to 101279111 19 + TSS region transcription start site region 105072
Tssr105073 11 101279112 to 101279147 35 + TSS region transcription start site region 105073
Tssr105074 11 101279157 to 101279188 31 + TSS region transcription start site region 105074
Cntd1 11 101279203 to 101288701 9498 + protein coding gene cyclin N-terminal domain containing 1
Becn1 11 101288262 to 101302290 14028 - protein coding gene beclin 1, autophagy related
Cpgi3867 11 101301743 to 101302482 739 CpG island CpG island 3867
Tssr110922 11 101302229 to 101302291 62 - TSS region transcription start site region 110922
Gm11617 11 101306742 to 101307380 638 + pseudogene predicted gene 11617
Cpgi3868 11 101315714 to 101316895 1181 CpG island CpG island 3868
Tssr105075 11 101316200 to 101316275 75 + TSS region transcription start site region 105075
Psme3 11 101316251 to 101323531 7280 + protein coding gene proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)
Tssr105076 11 101316836 to 101316890 54 + TSS region transcription start site region 105076
Tssr105077 11 101316917 to 101316927 10 + TSS region transcription start site region 105077
Tssr105078 11 101320723 to 101320737 14 + TSS region transcription start site region 105078
Tssr105079 11 101321883 to 101321916 33 + TSS region transcription start site region 105079
Tssr105080 11 101322054 to 101322095 41 + TSS region transcription start site region 105080
Tssr105081 11 101322172 to 101322189 17 + TSS region transcription start site region 105081
Tssr105082 11 101322572 to 101322591 19 + TSS region transcription start site region 105082
Tssr105083 11 101322846 to 101322897 51 + TSS region transcription start site region 105083
Tssr105084 11 101323033 to 101323064 31 + TSS region transcription start site region 105084
Aoc2 11 101325063 to 101329702 4639 + protein coding gene amine oxidase, copper containing 2 (retina-specific)
Aoc3 11 101330606 to 101339430 8824 + protein coding gene amine oxidase, copper containing 3
Tssr105085 11 101330773 to 101330795 22 + TSS region transcription start site region 105085
Tssr105086 11 101330810 to 101330820 10 + TSS region transcription start site region 105086
Tssr105087 11 101330832 to 101330858 26 + TSS region transcription start site region 105087
Tssr105088 11 101330863 to 101330874 11 + TSS region transcription start site region 105088
Tssr105089 11 101330879 to 101330886 7 + TSS region transcription start site region 105089
Tssr105090 11 101337641 to 101337645 4 + TSS region transcription start site region 105090
Tssr105091 11 101337762 to 101337777 15 + TSS region transcription start site region 105091
Tssr110923 11 101338011 to 101338039 28 - TSS region transcription start site region 110923
Tssr105092 11 101338237 to 101338266 29 + TSS region transcription start site region 105092
Gm28156 11 101339660 to 101347939 8279 - antisense lncRNA gene predicted gene 28156
4931418L13Rik 11 101347972 to 101348572 600 unclassified gene RIKEN cDNA 4931418L13 gene
Tssr105093 11 101348012 to 101348019 7 + TSS region transcription start site region 105093