Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:101001096-101281215

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160 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Corn2 11 100334407 to 101080527 746120 heritable phenotypic marker corneal disease 2
Cpgi3839 11 101009239 to 101009897 658 CpG island CpG island 3839
Tssr110907 11 101009314 to 101009349 35 - TSS region transcription start site region 110907
Atp6v0a1 11 101009452 to 101063719 54267 + protein coding gene ATPase, H+ transporting, lysosomal V0 subunit A1
Tssr104987 11 101009465 to 101009528 63 + TSS region transcription start site region 104987
Tssr104988 11 101009529 to 101009538 9 + TSS region transcription start site region 104988
Cpgi3840 11 101010460 to 101010614 154 CpG island CpG island 3840
Tssr104989 11 101011748 to 101011765 17 + TSS region transcription start site region 104989
Tssr104990 11 101011993 to 101011997 4 + TSS region transcription start site region 104990
Tssr104991 11 101012074 to 101012081 7 + TSS region transcription start site region 104991
Tssr104992 11 101016045 to 101016059 14 + TSS region transcription start site region 104992
C030015D21Rik 11 101019348 to 101020025 677 unclassified gene RIKEN cDNA C030015D21 gene
Tssr110908 11 101020502 to 101020526 24 - TSS region transcription start site region 110908
Tssr104993 11 101020954 to 101020969 15 + TSS region transcription start site region 104993
Tssr104994 11 101021437 to 101021451 14 + TSS region transcription start site region 104994
Tssr104995 11 101022684 to 101022692 8 + TSS region transcription start site region 104995
Tssr104996 11 101022735 to 101022746 11 + TSS region transcription start site region 104996
Tssr104997 11 101022875 to 101022886 11 + TSS region transcription start site region 104997
Tssr104998 11 101022902 to 101022924 22 + TSS region transcription start site region 104998
Tssr104999 11 101022933 to 101022937 4 + TSS region transcription start site region 104999
Tssr105000 11 101022958 to 101022972 14 + TSS region transcription start site region 105000
Tssr105001 11 101022979 to 101022986 7 + TSS region transcription start site region 105001
Tssr105002 11 101023068 to 101023081 13 + TSS region transcription start site region 105002
Tssr105003 11 101023103 to 101023125 22 + TSS region transcription start site region 105003
Tssr105004 11 101023128 to 101023158 30 + TSS region transcription start site region 105004
Tssr105005 11 101023279 to 101023286 7 + TSS region transcription start site region 105005
Tssr105006 11 101023294 to 101023308 14 + TSS region transcription start site region 105006
Tssr105007 11 101024616 to 101024660 44 + TSS region transcription start site region 105007
Tssr105008 11 101024971 to 101024974 3 + TSS region transcription start site region 105008
Tssr105009 11 101026423 to 101026438 15 + TSS region transcription start site region 105009
Mir6928 11 101030340 to 101030409 69 + miRNA gene microRNA 6928
Tssr105010 11 101030403 to 101030430 27 + TSS region transcription start site region 105010
Tssr105011 11 101031386 to 101031390 4 + TSS region transcription start site region 105011
Tssr105012 11 101031485 to 101031497 12 + TSS region transcription start site region 105012
Tssr105013 11 101033109 to 101033127 18 + TSS region transcription start site region 105013
Tssr105014 11 101033380 to 101033399 19 + TSS region transcription start site region 105014
Tssr105015 11 101033911 to 101033954 43 + TSS region transcription start site region 105015
Tssr105016 11 101036721 to 101036748 27 + TSS region transcription start site region 105016
Tssr105017 11 101039832 to 101039846 14 + TSS region transcription start site region 105017
Tssr105018 11 101039877 to 101039888 11 + TSS region transcription start site region 105018
Tssr105019 11 101045072 to 101045090 18 + TSS region transcription start site region 105019
Tssr105020 11 101048436 to 101048455 19 + TSS region transcription start site region 105020
A930017D03Rik 11 101052324 to 101053851 1527 unclassified gene RIKEN cDNA A930017D03 gene
D11Ertd717e 11 101054052 to 101054251 199 DNA segment DNA segment, Chr 11, ERATO Doi 717, expressed
Tssr105021 11 101055080 to 101055095 15 + TSS region transcription start site region 105021
Tssr105022 11 101055495 to 101055533 38 + TSS region transcription start site region 105022
Tssr105023 11 101062407 to 101062450 43 + TSS region transcription start site region 105023
Tssr105024 11 101062500 to 101062517 17 + TSS region transcription start site region 105024
Tssr110909 11 101062860 to 101062876 16 - TSS region transcription start site region 110909
Tssr105025 11 101063025 to 101063040 15 + TSS region transcription start site region 105025
Tssr105026 11 101063051 to 101063074 23 + TSS region transcription start site region 105026
Tssr105027 11 101063090 to 101063110 20 + TSS region transcription start site region 105027
Tssr105028 11 101063235 to 101063255 20 + TSS region transcription start site region 105028
Tssr105029 11 101063487 to 101063507 20 + TSS region transcription start site region 105029
Cpgi3841 11 101069757 to 101070918 1161 CpG island CpG island 3841
Tssr105030 11 101070081 to 101070121 40 + TSS region transcription start site region 105030
Naglu 11 101070094 to 101077672 7578 + protein coding gene alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)
Tssr105031 11 101071970 to 101072011 41 + TSS region transcription start site region 105031
Tssr105032 11 101074031 to 101074068 37 + TSS region transcription start site region 105032
Tssr105033 11 101078354 to 101078361 7 + TSS region transcription start site region 105033
Tssr105034 11 101078363 to 101078408 45 + TSS region transcription start site region 105034
Hsd17b1 11 101078411 to 101080527 2116 + protein coding gene hydroxysteroid (17-beta) dehydrogenase 1
Tssr105035 11 101078413 to 101078422 9 + TSS region transcription start site region 105035
Tssr105036 11 101078423 to 101078435 12 + TSS region transcription start site region 105036
Tssr105037 11 101078437 to 101078446 9 + TSS region transcription start site region 105037
Cpgi3842 11 101078980 to 101079362 382 CpG island CpG island 3842
Tssr105038 11 101079189 to 101079201 12 + TSS region transcription start site region 105038
Cpgi3843 11 101079527 to 101080076 549 CpG island CpG island 3843
Tssr105039 11 101079679 to 101079689 10 + TSS region transcription start site region 105039
Cpgi3844 11 101082180 to 101083174 994 CpG island CpG island 3844
Coasy 11 101082565 to 101086619 4054 + protein coding gene Coenzyme A synthase
Tssr105040 11 101082608 to 101082642 34 + TSS region transcription start site region 105040
Tssr105041 11 101082643 to 101082678 35 + TSS region transcription start site region 105041
Tssr105042 11 101082697 to 101082708 11 + TSS region transcription start site region 105042
Tssr105043 11 101082717 to 101082726 9 + TSS region transcription start site region 105043
Cpgi3845 11 101086855 to 101087949 1094 CpG island CpG island 3845
Mlx 11 101087277 to 101092207 4930 + protein coding gene MAX-like protein X
Tssr105044 11 101087283 to 101087323 40 + TSS region transcription start site region 105044
Psmc3ip 11 101092141 to 101095435 3294 - protein coding gene proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein
Cpgi3846 11 101094954 to 101095882 928 CpG island CpG island 3846
Tssr110910 11 101095367 to 101095439 72 - TSS region transcription start site region 110910
Retreg3 11 101096322 to 101119893 23571 - protein coding gene reticulophagy regulator family member 3
Cpgi3847 11 101119157 to 101120736 1579 CpG island CpG island 3847
Tssr110911 11 101119786 to 101119804 18 - TSS region transcription start site region 110911
Tssr110912 11 101119814 to 101119849 35 - TSS region transcription start site region 110912
Tssr110913 11 101119856 to 101119879 23 - TSS region transcription start site region 110913
Tssr110914 11 101119889 to 101119900 11 - TSS region transcription start site region 110914
Tssr105045 11 101119917 to 101119949 32 + TSS region transcription start site region 105045
Tubg1 11 101120068 to 101126419 6351 + protein coding gene tubulin, gamma 1
Tssr105046 11 101120107 to 101120157 50 + TSS region transcription start site region 105046
Tssr105047 11 101120158 to 101120173 15 + TSS region transcription start site region 105047
Tssr105048 11 101123439 to 101123465 26 + TSS region transcription start site region 105048
Cpgi3848 11 101140266 to 101140651 385 CpG island CpG island 3848
Gm27626 11 101140454 to 101140509 55 - miRNA gene predicted gene, 27626
D11Mit359 11 101141096 to 101141215 119 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 359
Cpgi3849 11 101155685 to 101156401 716 CpG island CpG island 3849
Tssr105049 11 101155884 to 101155921 37 + TSS region transcription start site region 105049
Tubg2 11 101155907 to 101161787 5880 + protein coding gene tubulin, gamma 2
Tssr105050 11 101155968 to 101156040 72 + TSS region transcription start site region 105050
Plekhh3 11 101162679 to 101171351 8672 - protein coding gene pleckstrin homology domain containing, family H (with MyTH4 domain) member 3
Cpgi3850 11 101163528 to 101164813 1285 CpG island CpG island 3850
Cpgi3851 11 101170214 to 101171516 1302 CpG island CpG island 3851
Tssr110915 11 101170327 to 101170334 7 - TSS region transcription start site region 110915
Tssr110916 11 101171196 to 101171207 11 - TSS region transcription start site region 110916
Tssr110917 11 101171302 to 101171353 51 - TSS region transcription start site region 110917
Cpgi3852 11 101171971 to 101172544 573 CpG island CpG island 3852
Ccr10 11 101172998 to 101175443 2445 - protein coding gene chemokine (C-C motif) receptor 10
Cpgi3853 11 101173445 to 101174633 1188 CpG island CpG island 3853
Cntnap1 11 101174649 to 101190723 16074 + protein coding gene contactin associated protein-like 1
Tssr110918 11 101175440 to 101175444 4 - TSS region transcription start site region 110918
Cpgi3854 11 101176127 to 101176617 490 CpG island CpG island 3854
Tssr3674 11 101176193 to 101176247 54 + TSS region transcription start site region 3674
Cpgi3855 11 101177974 to 101178372 398 CpG island CpG island 3855
Tssr105051 11 101180094 to 101180101 7 + TSS region transcription start site region 105051
Cpgi3856 11 101180328 to 101180493 165 CpG island CpG island 3856
Tssr105052 11 101181329 to 101181378 49 + TSS region transcription start site region 105052
Cpgi3857 11 101186526 to 101186725 199 CpG island CpG island 3857
Tssr105053 11 101188274 to 101188303 29 + TSS region transcription start site region 105053
Ezh1 11 101191115 to 101226463 35348 - protein coding gene enhancer of zeste 1 polycomb repressive complex 2 subunit
Cpgi3858 11 101225855 to 101226685 830 CpG island CpG island 3858
Tssr110919 11 101226414 to 101226455 41 - TSS region transcription start site region 110919
Tssr110920 11 101232294 to 101232335 41 - TSS region transcription start site region 110920
D830013H23Rik 11 101245105 to 101246745 1640 unclassified gene RIKEN cDNA D830013H23 gene
Cpgi3859 11 101245956 to 101246887 931 CpG island CpG island 3859
Tssr105054 11 101245996 to 101246044 48 + TSS region transcription start site region 105054
Tssr105055 11 101246047 to 101246058 11 + TSS region transcription start site region 105055
Tssr105056 11 101246063 to 101246068 5 + TSS region transcription start site region 105056
Tssr105057 11 101246329 to 101246332 3 + TSS region transcription start site region 105057
Ramp2 11 101246334 to 101248250 1916 + protein coding gene receptor (calcitonin) activity modifying protein 2
Tssr105058 11 101246345 to 101246350 5 + TSS region transcription start site region 105058
Tssr105059 11 101246356 to 101246370 14 + TSS region transcription start site region 105059
Tssr105060 11 101246383 to 101246391 8 + TSS region transcription start site region 105060
Tssr105061 11 101246405 to 101246422 17 + TSS region transcription start site region 105061
Tssr105062 11 101246924 to 101246935 11 + TSS region transcription start site region 105062
Tssr3675 11 101246937 to 101246957 20 + TSS region transcription start site region 3675
Tssr105063 11 101246960 to 101246981 21 + TSS region transcription start site region 105063
Tssr105064 11 101253573 to 101253594 21 + TSS region transcription start site region 105064
Cpgi3860 11 101253581 to 101254233 652 CpG island CpG island 3860
Vps25 11 101253707 to 101259549 5842 + protein coding gene vacuolar protein sorting 25
Tssr105065 11 101253720 to 101253757 37 + TSS region transcription start site region 105065
Tssr105066 11 101255718 to 101255724 6 + TSS region transcription start site region 105066
Tssr105067 11 101259155 to 101259177 22 + TSS region transcription start site region 105067
Tssr105068 11 101259219 to 101259248 29 + TSS region transcription start site region 105068
Cpgi3861 11 101260190 to 101261268 1078 CpG island CpG island 3861
Tssr105069 11 101260549 to 101260560 11 + TSS region transcription start site region 105069
Wnk4 11 101260567 to 101277409 16842 + protein coding gene WNK lysine deficient protein kinase 4
Tssr105070 11 101260569 to 101260622 53 + TSS region transcription start site region 105070
Cpgi3862 11 101262558 to 101262909 351 CpG island CpG island 3862
Cpgi3863 11 101263688 to 101264062 374 CpG island CpG island 3863
Gm11615 11 101264762 to 101266303 1541 - antisense lncRNA gene predicted gene 11615
Cpgi3864 11 101264960 to 101265577 617 CpG island CpG island 3864
Tssr105071 11 101268779 to 101268785 6 + TSS region transcription start site region 105071
Cpgi3865 11 101276520 to 101276722 202 CpG island CpG island 3865
Coa3 11 101277970 to 101278948 978 - protein coding gene cytochrome C oxidase assembly factor 3
Cpgi3866 11 101278590 to 101279510 920 CpG island CpG island 3866
Tssr110921 11 101278927 to 101278969 42 - TSS region transcription start site region 110921
Tssr105072 11 101279092 to 101279111 19 + TSS region transcription start site region 105072
Tssr105073 11 101279112 to 101279147 35 + TSS region transcription start site region 105073
Tssr105074 11 101279157 to 101279188 31 + TSS region transcription start site region 105074
Cntd1 11 101279203 to 101288701 9498 + protein coding gene cyclin N-terminal domain containing 1