Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:100870570-101070583

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stat5a 11 100859351 to 100885169 25818 + protein coding gene signal transducer and activator of transcription 5A
Tssr110883 11 100882145 to 100882173 28 - TSS region transcription start site region 110883
Tssr104982 11 100884374 to 100884390 16 + TSS region transcription start site region 104982
Tssr104983 11 100884633 to 100884644 11 + TSS region transcription start site region 104983
Stat3 11 100886806 to 100939579 52773 - protein coding gene signal transducer and activator of transcription 3
Tssr110884 11 100888574 to 100888584 10 - TSS region transcription start site region 110884
Tssr110885 11 100889552 to 100889577 25 - TSS region transcription start site region 110885
Tssr110886 11 100903459 to 100903470 11 - TSS region transcription start site region 110886
Tssr110887 11 100918105 to 100918107 2 - TSS region transcription start site region 110887
Tssr110888 11 100931449 to 100931453 4 - TSS region transcription start site region 110888
Gm46295 11 100935442 to 100940242 4800 + lncRNA gene predicted gene, 46295
Tssr3673 11 100938749 to 100938767 18 + TSS region transcription start site region 3673
Cpgi3836 11 100938928 to 100939958 1030 CpG island CpG island 3836
Tssr110889 11 100939307 to 100939319 12 - TSS region transcription start site region 110889
Tssr110890 11 100939327 to 100939355 28 - TSS region transcription start site region 110890
Tssr110891 11 100939357 to 100939456 99 - TSS region transcription start site region 110891
Tssr110892 11 100939457 to 100939484 27 - TSS region transcription start site region 110892
Tssr110893 11 100939555 to 100939566 11 - TSS region transcription start site region 110893
Tssr110894 11 100939587 to 100939607 20 - TSS region transcription start site region 110894
Tssr104984 11 100939857 to 100939871 14 + TSS region transcription start site region 104984
Tssr104985 11 100940118 to 100940146 28 + TSS region transcription start site region 104985
Tssr110895 11 100955209 to 100955213 4 - TSS region transcription start site region 110895
Cavin1 11 100956733 to 100970887 14154 - protein coding gene caveolae associated 1
Tssr110896 11 100956921 to 100956927 6 - TSS region transcription start site region 110896
Tssr110897 11 100956966 to 100957001 35 - TSS region transcription start site region 110897
Tssr110898 11 100957982 to 100957993 11 - TSS region transcription start site region 110898
Cpgi3837 11 100958381 to 100959469 1088 CpG island CpG island 3837
Tssr110899 11 100958899 to 100958906 7 - TSS region transcription start site region 110899
D11Mit250.1 11 100961545 to 100961727 182 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 250.1
D11Mit250 11 100961670 to 100961801 131 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 250
D11Mit250.2 11 100961770 to 100961881 111 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 250.2
Cpgi3838 11 100969147 to 100970846 1699 CpG island CpG island 3838
Tssr110900 11 100969722 to 100969756 34 - TSS region transcription start site region 110900
Tssr104986 11 100969864 to 100969894 30 + TSS region transcription start site region 104986
Tssr110901 11 100970157 to 100970175 18 - TSS region transcription start site region 110901
Tssr110902 11 100970521 to 100970532 11 - TSS region transcription start site region 110902
Tssr110903 11 100970538 to 100970551 13 - TSS region transcription start site region 110903
Tssr110904 11 100970570 to 100970583 13 - TSS region transcription start site region 110904
Tssr110905 11 100970605 to 100970631 26 - TSS region transcription start site region 110905
Tssr110906 11 100984868 to 100984878 10 - TSS region transcription start site region 110906
Cpgi3839 11 101009239 to 101009897 658 CpG island CpG island 3839
Tssr110907 11 101009314 to 101009349 35 - TSS region transcription start site region 110907
Atp6v0a1 11 101009452 to 101063719 54267 + protein coding gene ATPase, H+ transporting, lysosomal V0 subunit A1
Tssr104987 11 101009465 to 101009528 63 + TSS region transcription start site region 104987
Tssr104988 11 101009529 to 101009538 9 + TSS region transcription start site region 104988
Cpgi3840 11 101010460 to 101010614 154 CpG island CpG island 3840
Tssr104989 11 101011748 to 101011765 17 + TSS region transcription start site region 104989
Tssr104990 11 101011993 to 101011997 4 + TSS region transcription start site region 104990
Tssr104991 11 101012074 to 101012081 7 + TSS region transcription start site region 104991
Tssr104992 11 101016045 to 101016059 14 + TSS region transcription start site region 104992
C030015D21Rik 11 101019348 to 101020025 677 unclassified gene RIKEN cDNA C030015D21 gene
Tssr110908 11 101020502 to 101020526 24 - TSS region transcription start site region 110908
Tssr104993 11 101020954 to 101020969 15 + TSS region transcription start site region 104993
Tssr104994 11 101021437 to 101021451 14 + TSS region transcription start site region 104994
Tssr104995 11 101022684 to 101022692 8 + TSS region transcription start site region 104995
Tssr104996 11 101022735 to 101022746 11 + TSS region transcription start site region 104996
Tssr104997 11 101022875 to 101022886 11 + TSS region transcription start site region 104997
Tssr104998 11 101022902 to 101022924 22 + TSS region transcription start site region 104998
Tssr104999 11 101022933 to 101022937 4 + TSS region transcription start site region 104999
Tssr105000 11 101022958 to 101022972 14 + TSS region transcription start site region 105000
Tssr105001 11 101022979 to 101022986 7 + TSS region transcription start site region 105001
Tssr105002 11 101023068 to 101023081 13 + TSS region transcription start site region 105002
Tssr105003 11 101023103 to 101023125 22 + TSS region transcription start site region 105003
Tssr105004 11 101023128 to 101023158 30 + TSS region transcription start site region 105004
Tssr105005 11 101023279 to 101023286 7 + TSS region transcription start site region 105005
Tssr105006 11 101023294 to 101023308 14 + TSS region transcription start site region 105006
Tssr105007 11 101024616 to 101024660 44 + TSS region transcription start site region 105007
Tssr105008 11 101024971 to 101024974 3 + TSS region transcription start site region 105008
Tssr105009 11 101026423 to 101026438 15 + TSS region transcription start site region 105009
Mir6928 11 101030340 to 101030409 69 + miRNA gene microRNA 6928
Tssr105010 11 101030403 to 101030430 27 + TSS region transcription start site region 105010
Tssr105011 11 101031386 to 101031390 4 + TSS region transcription start site region 105011
Tssr105012 11 101031485 to 101031497 12 + TSS region transcription start site region 105012
Tssr105013 11 101033109 to 101033127 18 + TSS region transcription start site region 105013
Tssr105014 11 101033380 to 101033399 19 + TSS region transcription start site region 105014
Tssr105015 11 101033911 to 101033954 43 + TSS region transcription start site region 105015
Tssr105016 11 101036721 to 101036748 27 + TSS region transcription start site region 105016
Tssr105017 11 101039832 to 101039846 14 + TSS region transcription start site region 105017
Tssr105018 11 101039877 to 101039888 11 + TSS region transcription start site region 105018
Tssr105019 11 101045072 to 101045090 18 + TSS region transcription start site region 105019
Tssr105020 11 101048436 to 101048455 19 + TSS region transcription start site region 105020
A930017D03Rik 11 101052324 to 101053851 1527 unclassified gene RIKEN cDNA A930017D03 gene
D11Ertd717e 11 101054052 to 101054251 199 DNA segment DNA segment, Chr 11, ERATO Doi 717, expressed
Tssr105021 11 101055080 to 101055095 15 + TSS region transcription start site region 105021
Tssr105022 11 101055495 to 101055533 38 + TSS region transcription start site region 105022
Tssr105023 11 101062407 to 101062450 43 + TSS region transcription start site region 105023
Tssr105024 11 101062500 to 101062517 17 + TSS region transcription start site region 105024
Tssr110909 11 101062860 to 101062876 16 - TSS region transcription start site region 110909
Tssr105025 11 101063025 to 101063040 15 + TSS region transcription start site region 105025
Tssr105026 11 101063051 to 101063074 23 + TSS region transcription start site region 105026
Tssr105027 11 101063090 to 101063110 20 + TSS region transcription start site region 105027
Tssr105028 11 101063235 to 101063255 20 + TSS region transcription start site region 105028
Tssr105029 11 101063487 to 101063507 20 + TSS region transcription start site region 105029
Cpgi3841 11 101069757 to 101070918 1161 CpG island CpG island 3841
Tssr105030 11 101070081 to 101070121 40 + TSS region transcription start site region 105030
Naglu 11 101070094 to 101077672 7578 + protein coding gene alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)