Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:100752145-101012173

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kcnh4 11 100740376 to 100759942 19566 - protein coding gene potassium voltage-gated channel, subfamily H (eag-related), member 4
Tssr110865 11 100752905 to 100752907 2 - TSS region transcription start site region 110865
Cpgi3832 11 100759272 to 100760174 902 CpG island CpG island 3832
Tssr110866 11 100759741 to 100759754 13 - TSS region transcription start site region 110866
Tssr110867 11 100759995 to 100760011 16 - TSS region transcription start site region 110867
Cpgi3833 11 100761604 to 100762286 682 CpG island CpG island 3833
Hcrt 11 100761693 to 100762931 1238 - protein coding gene hypocretin
Tssr110868 11 100762931 to 100762936 5 - TSS region transcription start site region 110868
Ghdc 11 100766032 to 100770957 4925 - protein coding gene GH3 domain containing
Tssr110869 11 100770926 to 100770964 38 - TSS region transcription start site region 110869
Gm24358 11 100774513 to 100774800 287 - unclassified non-coding RNA gene predicted gene, 24358
Stat5b 11 100780731 to 100850724 69993 - protein coding gene signal transducer and activator of transcription 5B
Tssr110870 11 100803849 to 100803861 12 - TSS region transcription start site region 110870
Tssr110871 11 100803972 to 100803986 14 - TSS region transcription start site region 110871
Tssr110872 11 100821022 to 100821026 4 - TSS region transcription start site region 110872
Tssr110873 11 100822480 to 100822491 11 - TSS region transcription start site region 110873
Tssr110874 11 100822508 to 100822517 9 - TSS region transcription start site region 110874
Tssr110875 11 100822525 to 100822576 51 - TSS region transcription start site region 110875
Tssr104964 11 100824216 to 100824239 23 + TSS region transcription start site region 104964
Tssr110876 11 100845897 to 100845911 14 - TSS region transcription start site region 110876
Tssr110877 11 100846007 to 100846018 11 - TSS region transcription start site region 110877
Tssr110878 11 100846056 to 100846064 8 - TSS region transcription start site region 110878
Tssr104965 11 100846269 to 100846277 8 + TSS region transcription start site region 104965
Tssr104966 11 100846302 to 100846317 15 + TSS region transcription start site region 104966
Tssr110879 11 100848135 to 100848181 46 - TSS region transcription start site region 110879
Tssr110880 11 100848404 to 100848413 9 - TSS region transcription start site region 110880
Tssr104967 11 100849627 to 100849638 11 + TSS region transcription start site region 104967
Cpgi3834 11 100849800 to 100851461 1661 CpG island CpG island 3834
Tssr104968 11 100850047 to 100850061 14 + TSS region transcription start site region 104968
Tssr110881 11 100850487 to 100850596 109 - TSS region transcription start site region 110881
Tssr110882 11 100850739 to 100850763 24 - TSS region transcription start site region 110882
Stat5a 11 100859351 to 100885169 25818 + protein coding gene signal transducer and activator of transcription 5A
Tssr104969 11 100859453 to 100859483 30 + TSS region transcription start site region 104969
Tssr104970 11 100859492 to 100859506 14 + TSS region transcription start site region 104970
Tssr104971 11 100859869 to 100859885 16 + TSS region transcription start site region 104971
Tssr104972 11 100860111 to 100860116 5 + TSS region transcription start site region 104972
Tssr104973 11 100860178 to 100860185 7 + TSS region transcription start site region 104973
Cpgi3835 11 100860193 to 100860875 682 CpG island CpG island 3835
Tssr104974 11 100860270 to 100860273 3 + TSS region transcription start site region 104974
Tssr104975 11 100860292 to 100860302 10 + TSS region transcription start site region 104975
Tssr104976 11 100860326 to 100860344 18 + TSS region transcription start site region 104976
Tssr104977 11 100860349 to 100860350 1 + TSS region transcription start site region 104977
Tssr104978 11 100860418 to 100860428 10 + TSS region transcription start site region 104978
Tssr104979 11 100860447 to 100860537 90 + TSS region transcription start site region 104979
Tssr104980 11 100860647 to 100860654 7 + TSS region transcription start site region 104980
Tssr104981 11 100862155 to 100862179 24 + TSS region transcription start site region 104981
Tssr110883 11 100882145 to 100882173 28 - TSS region transcription start site region 110883
Tssr104982 11 100884374 to 100884390 16 + TSS region transcription start site region 104982
Tssr104983 11 100884633 to 100884644 11 + TSS region transcription start site region 104983
Stat3 11 100886806 to 100939579 52773 - protein coding gene signal transducer and activator of transcription 3
Tssr110884 11 100888574 to 100888584 10 - TSS region transcription start site region 110884
Tssr110885 11 100889552 to 100889577 25 - TSS region transcription start site region 110885
Tssr110886 11 100903459 to 100903470 11 - TSS region transcription start site region 110886
Tssr110887 11 100918105 to 100918107 2 - TSS region transcription start site region 110887
Tssr110888 11 100931449 to 100931453 4 - TSS region transcription start site region 110888
Gm46295 11 100935442 to 100940242 4800 + lncRNA gene predicted gene, 46295
Tssr3673 11 100938749 to 100938767 18 + TSS region transcription start site region 3673
Cpgi3836 11 100938928 to 100939958 1030 CpG island CpG island 3836
Tssr110889 11 100939307 to 100939319 12 - TSS region transcription start site region 110889
Tssr110890 11 100939327 to 100939355 28 - TSS region transcription start site region 110890
Tssr110891 11 100939357 to 100939456 99 - TSS region transcription start site region 110891
Tssr110892 11 100939457 to 100939484 27 - TSS region transcription start site region 110892
Tssr110893 11 100939555 to 100939566 11 - TSS region transcription start site region 110893
Tssr110894 11 100939587 to 100939607 20 - TSS region transcription start site region 110894
Tssr104984 11 100939857 to 100939871 14 + TSS region transcription start site region 104984
Tssr104985 11 100940118 to 100940146 28 + TSS region transcription start site region 104985
Tssr110895 11 100955209 to 100955213 4 - TSS region transcription start site region 110895
Cavin1 11 100956733 to 100970887 14154 - protein coding gene caveolae associated 1
Tssr110896 11 100956921 to 100956927 6 - TSS region transcription start site region 110896
Tssr110897 11 100956966 to 100957001 35 - TSS region transcription start site region 110897
Tssr110898 11 100957982 to 100957993 11 - TSS region transcription start site region 110898
Cpgi3837 11 100958381 to 100959469 1088 CpG island CpG island 3837
Tssr110899 11 100958899 to 100958906 7 - TSS region transcription start site region 110899
D11Mit250.1 11 100961545 to 100961727 182 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 250.1
D11Mit250 11 100961670 to 100961801 131 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 250
D11Mit250.2 11 100961770 to 100961881 111 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 250.2
Cpgi3838 11 100969147 to 100970846 1699 CpG island CpG island 3838
Tssr110900 11 100969722 to 100969756 34 - TSS region transcription start site region 110900
Tssr104986 11 100969864 to 100969894 30 + TSS region transcription start site region 104986
Tssr110901 11 100970157 to 100970175 18 - TSS region transcription start site region 110901
Tssr110902 11 100970521 to 100970532 11 - TSS region transcription start site region 110902
Tssr110903 11 100970538 to 100970551 13 - TSS region transcription start site region 110903
Tssr110904 11 100970570 to 100970583 13 - TSS region transcription start site region 110904
Tssr110905 11 100970605 to 100970631 26 - TSS region transcription start site region 110905
Tssr110906 11 100984868 to 100984878 10 - TSS region transcription start site region 110906
Cpgi3839 11 101009239 to 101009897 658 CpG island CpG island 3839
Tssr110907 11 101009314 to 101009349 35 - TSS region transcription start site region 110907
Atp6v0a1 11 101009452 to 101063719 54267 + protein coding gene ATPase, H+ transporting, lysosomal V0 subunit A1
Tssr104987 11 101009465 to 101009528 63 + TSS region transcription start site region 104987
Tssr104988 11 101009529 to 101009538 9 + TSS region transcription start site region 104988
Cpgi3840 11 101010460 to 101010614 154 CpG island CpG island 3840
Tssr104989 11 101011748 to 101011765 17 + TSS region transcription start site region 104989
Tssr104990 11 101011993 to 101011997 4 + TSS region transcription start site region 104990
Tssr104991 11 101012074 to 101012081 7 + TSS region transcription start site region 104991