Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:100738200-102198235

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583 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Corn2 11 100334407 to 101080527 746120 heritable phenotypic marker corneal disease 2
Rab5c 11 100715009 to 100738215 23206 - protein coding gene RAB5C, member RAS oncogene family
Cpgi3830 11 100737902 to 100738708 806 CpG island CpG island 3830
Tssr110864 11 100738153 to 100738212 59 - TSS region transcription start site region 110864
Kcnh4 11 100740376 to 100759942 19566 - protein coding gene potassium voltage-gated channel, subfamily H (eag-related), member 4
Cpgi3831 11 100749420 to 100750501 1081 CpG island CpG island 3831
Tssr110865 11 100752905 to 100752907 2 - TSS region transcription start site region 110865
Cpgi3832 11 100759272 to 100760174 902 CpG island CpG island 3832
Tssr110866 11 100759741 to 100759754 13 - TSS region transcription start site region 110866
Tssr110867 11 100759995 to 100760011 16 - TSS region transcription start site region 110867
Cpgi3833 11 100761604 to 100762286 682 CpG island CpG island 3833
Hcrt 11 100761693 to 100762931 1238 - protein coding gene hypocretin
Tssr110868 11 100762931 to 100762936 5 - TSS region transcription start site region 110868
Ghdc 11 100766032 to 100770957 4925 - protein coding gene GH3 domain containing
Tssr110869 11 100770926 to 100770964 38 - TSS region transcription start site region 110869
Gm24358 11 100774513 to 100774800 287 - unclassified non-coding RNA gene predicted gene, 24358
Stat5b 11 100780731 to 100850724 69993 - protein coding gene signal transducer and activator of transcription 5B
Tssr110870 11 100803849 to 100803861 12 - TSS region transcription start site region 110870
Tssr110871 11 100803972 to 100803986 14 - TSS region transcription start site region 110871
Tssr110872 11 100821022 to 100821026 4 - TSS region transcription start site region 110872
Tssr110873 11 100822480 to 100822491 11 - TSS region transcription start site region 110873
Tssr110874 11 100822508 to 100822517 9 - TSS region transcription start site region 110874
Tssr110875 11 100822525 to 100822576 51 - TSS region transcription start site region 110875
Tssr104964 11 100824216 to 100824239 23 + TSS region transcription start site region 104964
Tssr110876 11 100845897 to 100845911 14 - TSS region transcription start site region 110876
Tssr110877 11 100846007 to 100846018 11 - TSS region transcription start site region 110877
Tssr110878 11 100846056 to 100846064 8 - TSS region transcription start site region 110878
Tssr104965 11 100846269 to 100846277 8 + TSS region transcription start site region 104965
Tssr104966 11 100846302 to 100846317 15 + TSS region transcription start site region 104966
Tssr110879 11 100848135 to 100848181 46 - TSS region transcription start site region 110879
Tssr110880 11 100848404 to 100848413 9 - TSS region transcription start site region 110880
Tssr104967 11 100849627 to 100849638 11 + TSS region transcription start site region 104967
Cpgi3834 11 100849800 to 100851461 1661 CpG island CpG island 3834
Tssr104968 11 100850047 to 100850061 14 + TSS region transcription start site region 104968
Tssr110881 11 100850487 to 100850596 109 - TSS region transcription start site region 110881
Tssr110882 11 100850739 to 100850763 24 - TSS region transcription start site region 110882
Stat5a 11 100859351 to 100885169 25818 + protein coding gene signal transducer and activator of transcription 5A
Tssr104969 11 100859453 to 100859483 30 + TSS region transcription start site region 104969
Tssr104970 11 100859492 to 100859506 14 + TSS region transcription start site region 104970
Tssr104971 11 100859869 to 100859885 16 + TSS region transcription start site region 104971
Tssr104972 11 100860111 to 100860116 5 + TSS region transcription start site region 104972
Tssr104973 11 100860178 to 100860185 7 + TSS region transcription start site region 104973
Cpgi3835 11 100860193 to 100860875 682 CpG island CpG island 3835
Tssr104974 11 100860270 to 100860273 3 + TSS region transcription start site region 104974
Tssr104975 11 100860292 to 100860302 10 + TSS region transcription start site region 104975
Tssr104976 11 100860326 to 100860344 18 + TSS region transcription start site region 104976
Tssr104977 11 100860349 to 100860350 1 + TSS region transcription start site region 104977
Tssr104978 11 100860418 to 100860428 10 + TSS region transcription start site region 104978
Tssr104979 11 100860447 to 100860537 90 + TSS region transcription start site region 104979
Tssr104980 11 100860647 to 100860654 7 + TSS region transcription start site region 104980
Tssr104981 11 100862155 to 100862179 24 + TSS region transcription start site region 104981
Tssr110883 11 100882145 to 100882173 28 - TSS region transcription start site region 110883
Tssr104982 11 100884374 to 100884390 16 + TSS region transcription start site region 104982
Tssr104983 11 100884633 to 100884644 11 + TSS region transcription start site region 104983
Stat3 11 100886806 to 100939579 52773 - protein coding gene signal transducer and activator of transcription 3
Tssr110884 11 100888574 to 100888584 10 - TSS region transcription start site region 110884
Tssr110885 11 100889552 to 100889577 25 - TSS region transcription start site region 110885
Tssr110886 11 100903459 to 100903470 11 - TSS region transcription start site region 110886
Tssr110887 11 100918105 to 100918107 2 - TSS region transcription start site region 110887
Tssr110888 11 100931449 to 100931453 4 - TSS region transcription start site region 110888
Gm46295 11 100935442 to 100940242 4800 + lncRNA gene predicted gene, 46295
Tssr3673 11 100938749 to 100938767 18 + TSS region transcription start site region 3673
Cpgi3836 11 100938928 to 100939958 1030 CpG island CpG island 3836
Tssr110889 11 100939307 to 100939319 12 - TSS region transcription start site region 110889
Tssr110890 11 100939327 to 100939355 28 - TSS region transcription start site region 110890
Tssr110891 11 100939357 to 100939456 99 - TSS region transcription start site region 110891
Tssr110892 11 100939457 to 100939484 27 - TSS region transcription start site region 110892
Tssr110893 11 100939555 to 100939566 11 - TSS region transcription start site region 110893
Tssr110894 11 100939587 to 100939607 20 - TSS region transcription start site region 110894
Tssr104984 11 100939857 to 100939871 14 + TSS region transcription start site region 104984
Tssr104985 11 100940118 to 100940146 28 + TSS region transcription start site region 104985
Tssr110895 11 100955209 to 100955213 4 - TSS region transcription start site region 110895
Cavin1 11 100956733 to 100970887 14154 - protein coding gene caveolae associated 1
Tssr110896 11 100956921 to 100956927 6 - TSS region transcription start site region 110896
Tssr110897 11 100956966 to 100957001 35 - TSS region transcription start site region 110897
Tssr110898 11 100957982 to 100957993 11 - TSS region transcription start site region 110898
Cpgi3837 11 100958381 to 100959469 1088 CpG island CpG island 3837
Tssr110899 11 100958899 to 100958906 7 - TSS region transcription start site region 110899
D11Mit250.1 11 100961545 to 100961727 182 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 250.1
D11Mit250 11 100961670 to 100961801 131 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 250
D11Mit250.2 11 100961770 to 100961881 111 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 250.2
Cpgi3838 11 100969147 to 100970846 1699 CpG island CpG island 3838
Tssr110900 11 100969722 to 100969756 34 - TSS region transcription start site region 110900
Tssr104986 11 100969864 to 100969894 30 + TSS region transcription start site region 104986
Tssr110901 11 100970157 to 100970175 18 - TSS region transcription start site region 110901
Tssr110902 11 100970521 to 100970532 11 - TSS region transcription start site region 110902
Tssr110903 11 100970538 to 100970551 13 - TSS region transcription start site region 110903
Tssr110904 11 100970570 to 100970583 13 - TSS region transcription start site region 110904
Tssr110905 11 100970605 to 100970631 26 - TSS region transcription start site region 110905
Tssr110906 11 100984868 to 100984878 10 - TSS region transcription start site region 110906
Cpgi3839 11 101009239 to 101009897 658 CpG island CpG island 3839
Tssr110907 11 101009314 to 101009349 35 - TSS region transcription start site region 110907
Atp6v0a1 11 101009452 to 101063719 54267 + protein coding gene ATPase, H+ transporting, lysosomal V0 subunit A1
Tssr104987 11 101009465 to 101009528 63 + TSS region transcription start site region 104987
Tssr104988 11 101009529 to 101009538 9 + TSS region transcription start site region 104988
Cpgi3840 11 101010460 to 101010614 154 CpG island CpG island 3840
Tssr104989 11 101011748 to 101011765 17 + TSS region transcription start site region 104989
Tssr104990 11 101011993 to 101011997 4 + TSS region transcription start site region 104990
Tssr104991 11 101012074 to 101012081 7 + TSS region transcription start site region 104991
Tssr104992 11 101016045 to 101016059 14 + TSS region transcription start site region 104992
C030015D21Rik 11 101019348 to 101020025 677 unclassified gene RIKEN cDNA C030015D21 gene
Tssr110908 11 101020502 to 101020526 24 - TSS region transcription start site region 110908
Tssr104993 11 101020954 to 101020969 15 + TSS region transcription start site region 104993
Tssr104994 11 101021437 to 101021451 14 + TSS region transcription start site region 104994
Tssr104995 11 101022684 to 101022692 8 + TSS region transcription start site region 104995
Tssr104996 11 101022735 to 101022746 11 + TSS region transcription start site region 104996
Tssr104997 11 101022875 to 101022886 11 + TSS region transcription start site region 104997
Tssr104998 11 101022902 to 101022924 22 + TSS region transcription start site region 104998
Tssr104999 11 101022933 to 101022937 4 + TSS region transcription start site region 104999
Tssr105000 11 101022958 to 101022972 14 + TSS region transcription start site region 105000
Tssr105001 11 101022979 to 101022986 7 + TSS region transcription start site region 105001
Tssr105002 11 101023068 to 101023081 13 + TSS region transcription start site region 105002
Tssr105003 11 101023103 to 101023125 22 + TSS region transcription start site region 105003
Tssr105004 11 101023128 to 101023158 30 + TSS region transcription start site region 105004
Tssr105005 11 101023279 to 101023286 7 + TSS region transcription start site region 105005
Tssr105006 11 101023294 to 101023308 14 + TSS region transcription start site region 105006
Tssr105007 11 101024616 to 101024660 44 + TSS region transcription start site region 105007
Tssr105008 11 101024971 to 101024974 3 + TSS region transcription start site region 105008
Tssr105009 11 101026423 to 101026438 15 + TSS region transcription start site region 105009
Mir6928 11 101030340 to 101030409 69 + miRNA gene microRNA 6928
Tssr105010 11 101030403 to 101030430 27 + TSS region transcription start site region 105010
Tssr105011 11 101031386 to 101031390 4 + TSS region transcription start site region 105011
Tssr105012 11 101031485 to 101031497 12 + TSS region transcription start site region 105012
Tssr105013 11 101033109 to 101033127 18 + TSS region transcription start site region 105013
Tssr105014 11 101033380 to 101033399 19 + TSS region transcription start site region 105014
Tssr105015 11 101033911 to 101033954 43 + TSS region transcription start site region 105015
Tssr105016 11 101036721 to 101036748 27 + TSS region transcription start site region 105016
Tssr105017 11 101039832 to 101039846 14 + TSS region transcription start site region 105017
Tssr105018 11 101039877 to 101039888 11 + TSS region transcription start site region 105018
Tssr105019 11 101045072 to 101045090 18 + TSS region transcription start site region 105019
Tssr105020 11 101048436 to 101048455 19 + TSS region transcription start site region 105020
A930017D03Rik 11 101052324 to 101053851 1527 unclassified gene RIKEN cDNA A930017D03 gene
D11Ertd717e 11 101054052 to 101054251 199 DNA segment DNA segment, Chr 11, ERATO Doi 717, expressed
Tssr105021 11 101055080 to 101055095 15 + TSS region transcription start site region 105021
Tssr105022 11 101055495 to 101055533 38 + TSS region transcription start site region 105022
Tssr105023 11 101062407 to 101062450 43 + TSS region transcription start site region 105023
Tssr105024 11 101062500 to 101062517 17 + TSS region transcription start site region 105024
Tssr110909 11 101062860 to 101062876 16 - TSS region transcription start site region 110909
Tssr105025 11 101063025 to 101063040 15 + TSS region transcription start site region 105025
Tssr105026 11 101063051 to 101063074 23 + TSS region transcription start site region 105026
Tssr105027 11 101063090 to 101063110 20 + TSS region transcription start site region 105027
Tssr105028 11 101063235 to 101063255 20 + TSS region transcription start site region 105028
Tssr105029 11 101063487 to 101063507 20 + TSS region transcription start site region 105029
Cpgi3841 11 101069757 to 101070918 1161 CpG island CpG island 3841
Tssr105030 11 101070081 to 101070121 40 + TSS region transcription start site region 105030
Naglu 11 101070094 to 101077672 7578 + protein coding gene alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)
Tssr105031 11 101071970 to 101072011 41 + TSS region transcription start site region 105031
Tssr105032 11 101074031 to 101074068 37 + TSS region transcription start site region 105032
Tssr105033 11 101078354 to 101078361 7 + TSS region transcription start site region 105033
Tssr105034 11 101078363 to 101078408 45 + TSS region transcription start site region 105034
Hsd17b1 11 101078411 to 101080527 2116 + protein coding gene hydroxysteroid (17-beta) dehydrogenase 1
Tssr105035 11 101078413 to 101078422 9 + TSS region transcription start site region 105035
Tssr105036 11 101078423 to 101078435 12 + TSS region transcription start site region 105036
Tssr105037 11 101078437 to 101078446 9 + TSS region transcription start site region 105037
Cpgi3842 11 101078980 to 101079362 382 CpG island CpG island 3842
Tssr105038 11 101079189 to 101079201 12 + TSS region transcription start site region 105038
Cpgi3843 11 101079527 to 101080076 549 CpG island CpG island 3843
Tssr105039 11 101079679 to 101079689 10 + TSS region transcription start site region 105039
Cpgi3844 11 101082180 to 101083174 994 CpG island CpG island 3844
Coasy 11 101082565 to 101086619 4054 + protein coding gene Coenzyme A synthase
Tssr105040 11 101082608 to 101082642 34 + TSS region transcription start site region 105040
Tssr105041 11 101082643 to 101082678 35 + TSS region transcription start site region 105041
Tssr105042 11 101082697 to 101082708 11 + TSS region transcription start site region 105042
Tssr105043 11 101082717 to 101082726 9 + TSS region transcription start site region 105043
Cpgi3845 11 101086855 to 101087949 1094 CpG island CpG island 3845
Mlx 11 101087277 to 101092207 4930 + protein coding gene MAX-like protein X
Tssr105044 11 101087283 to 101087323 40 + TSS region transcription start site region 105044
Psmc3ip 11 101092141 to 101095435 3294 - protein coding gene proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein
Cpgi3846 11 101094954 to 101095882 928 CpG island CpG island 3846
Tssr110910 11 101095367 to 101095439 72 - TSS region transcription start site region 110910
Retreg3 11 101096322 to 101119893 23571 - protein coding gene reticulophagy regulator family member 3
Cpgi3847 11 101119157 to 101120736 1579 CpG island CpG island 3847
Tssr110911 11 101119786 to 101119804 18 - TSS region transcription start site region 110911
Tssr110912 11 101119814 to 101119849 35 - TSS region transcription start site region 110912
Tssr110913 11 101119856 to 101119879 23 - TSS region transcription start site region 110913
Tssr110914 11 101119889 to 101119900 11 - TSS region transcription start site region 110914
Tssr105045 11 101119917 to 101119949 32 + TSS region transcription start site region 105045
Tubg1 11 101120068 to 101126419 6351 + protein coding gene tubulin, gamma 1
Tssr105046 11 101120107 to 101120157 50 + TSS region transcription start site region 105046
Tssr105047 11 101120158 to 101120173 15 + TSS region transcription start site region 105047
Tssr105048 11 101123439 to 101123465 26 + TSS region transcription start site region 105048
Cpgi3848 11 101140266 to 101140651 385 CpG island CpG island 3848
Gm27626 11 101140454 to 101140509 55 - miRNA gene predicted gene, 27626
D11Mit359 11 101141096 to 101141215 119 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 359
Cpgi3849 11 101155685 to 101156401 716 CpG island CpG island 3849
Tssr105049 11 101155884 to 101155921 37 + TSS region transcription start site region 105049
Tubg2 11 101155907 to 101161787 5880 + protein coding gene tubulin, gamma 2
Tssr105050 11 101155968 to 101156040 72 + TSS region transcription start site region 105050
Plekhh3 11 101162679 to 101171351 8672 - protein coding gene pleckstrin homology domain containing, family H (with MyTH4 domain) member 3
Cpgi3850 11 101163528 to 101164813 1285 CpG island CpG island 3850
Cpgi3851 11 101170214 to 101171516 1302 CpG island CpG island 3851
Tssr110915 11 101170327 to 101170334 7 - TSS region transcription start site region 110915
Tssr110916 11 101171196 to 101171207 11 - TSS region transcription start site region 110916
Tssr110917 11 101171302 to 101171353 51 - TSS region transcription start site region 110917
Cpgi3852 11 101171971 to 101172544 573 CpG island CpG island 3852
Ccr10 11 101172998 to 101175443 2445 - protein coding gene chemokine (C-C motif) receptor 10
Cpgi3853 11 101173445 to 101174633 1188 CpG island CpG island 3853
Cntnap1 11 101174649 to 101190723 16074 + protein coding gene contactin associated protein-like 1
Tssr110918 11 101175440 to 101175444 4 - TSS region transcription start site region 110918
Cpgi3854 11 101176127 to 101176617 490 CpG island CpG island 3854