Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:100727508-100917517

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rab5c 11 100715009 to 100738215 23206 - protein coding gene RAB5C, member RAS oncogene family
Tssr104962 11 100736223 to 100736235 12 + TSS region transcription start site region 104962
Tssr104963 11 100736254 to 100736280 26 + TSS region transcription start site region 104963
Cpgi3830 11 100737902 to 100738708 806 CpG island CpG island 3830
Tssr110863 11 100738114 to 100738140 26 - TSS region transcription start site region 110863
Tssr110864 11 100738153 to 100738212 59 - TSS region transcription start site region 110864
Kcnh4 11 100740376 to 100759942 19566 - protein coding gene potassium voltage-gated channel, subfamily H (eag-related), member 4
Cpgi3831 11 100749420 to 100750501 1081 CpG island CpG island 3831
Tssr110865 11 100752905 to 100752907 2 - TSS region transcription start site region 110865
Cpgi3832 11 100759272 to 100760174 902 CpG island CpG island 3832
Tssr110866 11 100759741 to 100759754 13 - TSS region transcription start site region 110866
Tssr110867 11 100759995 to 100760011 16 - TSS region transcription start site region 110867
Cpgi3833 11 100761604 to 100762286 682 CpG island CpG island 3833
Hcrt 11 100761693 to 100762931 1238 - protein coding gene hypocretin
Tssr110868 11 100762931 to 100762936 5 - TSS region transcription start site region 110868
Ghdc 11 100766032 to 100770957 4925 - protein coding gene GH3 domain containing
Tssr110869 11 100770926 to 100770964 38 - TSS region transcription start site region 110869
Gm24358 11 100774513 to 100774800 287 - unclassified non-coding RNA gene predicted gene, 24358
Stat5b 11 100780731 to 100850724 69993 - protein coding gene signal transducer and activator of transcription 5B
Tssr110870 11 100803849 to 100803861 12 - TSS region transcription start site region 110870
Tssr110871 11 100803972 to 100803986 14 - TSS region transcription start site region 110871
Tssr110872 11 100821022 to 100821026 4 - TSS region transcription start site region 110872
Tssr110873 11 100822480 to 100822491 11 - TSS region transcription start site region 110873
Tssr110874 11 100822508 to 100822517 9 - TSS region transcription start site region 110874
Tssr110875 11 100822525 to 100822576 51 - TSS region transcription start site region 110875
Tssr104964 11 100824216 to 100824239 23 + TSS region transcription start site region 104964
Tssr110876 11 100845897 to 100845911 14 - TSS region transcription start site region 110876
Tssr110877 11 100846007 to 100846018 11 - TSS region transcription start site region 110877
Tssr110878 11 100846056 to 100846064 8 - TSS region transcription start site region 110878
Tssr104965 11 100846269 to 100846277 8 + TSS region transcription start site region 104965
Tssr104966 11 100846302 to 100846317 15 + TSS region transcription start site region 104966
Tssr110879 11 100848135 to 100848181 46 - TSS region transcription start site region 110879
Tssr110880 11 100848404 to 100848413 9 - TSS region transcription start site region 110880
Tssr104967 11 100849627 to 100849638 11 + TSS region transcription start site region 104967
Cpgi3834 11 100849800 to 100851461 1661 CpG island CpG island 3834
Tssr104968 11 100850047 to 100850061 14 + TSS region transcription start site region 104968
Tssr110881 11 100850487 to 100850596 109 - TSS region transcription start site region 110881
Tssr110882 11 100850739 to 100850763 24 - TSS region transcription start site region 110882
Stat5a 11 100859351 to 100885169 25818 + protein coding gene signal transducer and activator of transcription 5A
Tssr104969 11 100859453 to 100859483 30 + TSS region transcription start site region 104969
Tssr104970 11 100859492 to 100859506 14 + TSS region transcription start site region 104970
Tssr104971 11 100859869 to 100859885 16 + TSS region transcription start site region 104971
Tssr104972 11 100860111 to 100860116 5 + TSS region transcription start site region 104972
Tssr104973 11 100860178 to 100860185 7 + TSS region transcription start site region 104973
Cpgi3835 11 100860193 to 100860875 682 CpG island CpG island 3835
Tssr104974 11 100860270 to 100860273 3 + TSS region transcription start site region 104974
Tssr104975 11 100860292 to 100860302 10 + TSS region transcription start site region 104975
Tssr104976 11 100860326 to 100860344 18 + TSS region transcription start site region 104976
Tssr104977 11 100860349 to 100860350 1 + TSS region transcription start site region 104977
Tssr104978 11 100860418 to 100860428 10 + TSS region transcription start site region 104978
Tssr104979 11 100860447 to 100860537 90 + TSS region transcription start site region 104979
Tssr104980 11 100860647 to 100860654 7 + TSS region transcription start site region 104980
Tssr104981 11 100862155 to 100862179 24 + TSS region transcription start site region 104981
Tssr110883 11 100882145 to 100882173 28 - TSS region transcription start site region 110883
Tssr104982 11 100884374 to 100884390 16 + TSS region transcription start site region 104982
Tssr104983 11 100884633 to 100884644 11 + TSS region transcription start site region 104983
Stat3 11 100886806 to 100939579 52773 - protein coding gene signal transducer and activator of transcription 3
Tssr110884 11 100888574 to 100888584 10 - TSS region transcription start site region 110884
Tssr110885 11 100889552 to 100889577 25 - TSS region transcription start site region 110885
Tssr110886 11 100903459 to 100903470 11 - TSS region transcription start site region 110886