Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:100659995-100860011

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zfp385c 11 100627543 to 100692455 64912 - protein coding gene zinc finger protein 385C
Cpgi3825 11 100673145 to 100673410 265 CpG island CpG island 3825
Dhx58os 11 100687417 to 100697520 10103 + antisense lncRNA gene DEAH (Asp-Glu-Ala-His) box polypeptide 58, opposite strand
Gm38483 11 100689738 to 100697529 7791 + lncRNA gene predicted gene, 38483
Cpgi3826 11 100692155 to 100692316 161 CpG island CpG island 3826
Tssr110846 11 100692440 to 100692473 33 - TSS region transcription start site region 110846
Dhx58 11 100694884 to 100704271 9387 - protein coding gene DEXH (Asp-Glu-X-His) box polypeptide 58
Cpgi3827 11 100701229 to 100701437 208 CpG island CpG island 3827
Tssr110847 11 100701411 to 100701447 36 - TSS region transcription start site region 110847
Tssr110848 11 100703714 to 100703733 19 - TSS region transcription start site region 110848
Tssr110849 11 100704065 to 100704077 12 - TSS region transcription start site region 110849
Tssr110850 11 100704217 to 100704276 59 - TSS region transcription start site region 110850
Kat2a 11 100704746 to 100712465 7719 - protein coding gene K(lysine) acetyltransferase 2A
Cpgi3828 11 100711848 to 100712773 925 CpG island CpG island 3828
Tssr110851 11 100712346 to 100712355 9 - TSS region transcription start site region 110851
Tssr110852 11 100712429 to 100712476 47 - TSS region transcription start site region 110852
Cpgi3829 11 100713626 to 100714411 785 CpG island CpG island 3829
Hspb9 11 100713850 to 100714575 725 + protein coding gene heat shock protein, alpha-crystallin-related, B9
Tssr104959 11 100713917 to 100713938 21 + TSS region transcription start site region 104959
Tssr104960 11 100713954 to 100713965 11 + TSS region transcription start site region 104960
Rab5c 11 100715009 to 100738215 23206 - protein coding gene RAB5C, member RAS oncogene family
Tssr104961 11 100715265 to 100715273 8 + TSS region transcription start site region 104961
Tssr110853 11 100715354 to 100715376 22 - TSS region transcription start site region 110853
Tssr110854 11 100715774 to 100715801 27 - TSS region transcription start site region 110854
Tssr110855 11 100715884 to 100715894 10 - TSS region transcription start site region 110855
Tssr110856 11 100716012 to 100716053 41 - TSS region transcription start site region 110856
Tssr110857 11 100718568 to 100718587 19 - TSS region transcription start site region 110857
Tssr110858 11 100720109 to 100720127 18 - TSS region transcription start site region 110858
Tssr110859 11 100720144 to 100720155 11 - TSS region transcription start site region 110859
Tssr110860 11 100721314 to 100721320 6 - TSS region transcription start site region 110860
Tssr110861 11 100724224 to 100724256 32 - TSS region transcription start site region 110861
Tssr110862 11 100724280 to 100724291 11 - TSS region transcription start site region 110862
Tssr104962 11 100736223 to 100736235 12 + TSS region transcription start site region 104962
Tssr104963 11 100736254 to 100736280 26 + TSS region transcription start site region 104963
Cpgi3830 11 100737902 to 100738708 806 CpG island CpG island 3830
Tssr110863 11 100738114 to 100738140 26 - TSS region transcription start site region 110863
Tssr110864 11 100738153 to 100738212 59 - TSS region transcription start site region 110864
Kcnh4 11 100740376 to 100759942 19566 - protein coding gene potassium voltage-gated channel, subfamily H (eag-related), member 4
Cpgi3831 11 100749420 to 100750501 1081 CpG island CpG island 3831
Tssr110865 11 100752905 to 100752907 2 - TSS region transcription start site region 110865
Cpgi3832 11 100759272 to 100760174 902 CpG island CpG island 3832
Tssr110866 11 100759741 to 100759754 13 - TSS region transcription start site region 110866
Tssr110867 11 100759995 to 100760011 16 - TSS region transcription start site region 110867
Cpgi3833 11 100761604 to 100762286 682 CpG island CpG island 3833
Hcrt 11 100761693 to 100762931 1238 - protein coding gene hypocretin
Tssr110868 11 100762931 to 100762936 5 - TSS region transcription start site region 110868
Ghdc 11 100766032 to 100770957 4925 - protein coding gene GH3 domain containing
Tssr110869 11 100770926 to 100770964 38 - TSS region transcription start site region 110869
Gm24358 11 100774513 to 100774800 287 - unclassified non-coding RNA gene predicted gene, 24358
Stat5b 11 100780731 to 100850724 69993 - protein coding gene signal transducer and activator of transcription 5B
Tssr110870 11 100803849 to 100803861 12 - TSS region transcription start site region 110870
Tssr110871 11 100803972 to 100803986 14 - TSS region transcription start site region 110871
Tssr110872 11 100821022 to 100821026 4 - TSS region transcription start site region 110872
Tssr110873 11 100822480 to 100822491 11 - TSS region transcription start site region 110873
Tssr110874 11 100822508 to 100822517 9 - TSS region transcription start site region 110874
Tssr110875 11 100822525 to 100822576 51 - TSS region transcription start site region 110875
Tssr104964 11 100824216 to 100824239 23 + TSS region transcription start site region 104964
Tssr110876 11 100845897 to 100845911 14 - TSS region transcription start site region 110876
Tssr110877 11 100846007 to 100846018 11 - TSS region transcription start site region 110877
Tssr110878 11 100846056 to 100846064 8 - TSS region transcription start site region 110878
Tssr104965 11 100846269 to 100846277 8 + TSS region transcription start site region 104965
Tssr104966 11 100846302 to 100846317 15 + TSS region transcription start site region 104966
Tssr110879 11 100848135 to 100848181 46 - TSS region transcription start site region 110879
Tssr110880 11 100848404 to 100848413 9 - TSS region transcription start site region 110880
Tssr104967 11 100849627 to 100849638 11 + TSS region transcription start site region 104967
Cpgi3834 11 100849800 to 100851461 1661 CpG island CpG island 3834
Tssr104968 11 100850047 to 100850061 14 + TSS region transcription start site region 104968
Tssr110881 11 100850487 to 100850596 109 - TSS region transcription start site region 110881
Tssr110882 11 100850739 to 100850763 24 - TSS region transcription start site region 110882
Stat5a 11 100859351 to 100885169 25818 + protein coding gene signal transducer and activator of transcription 5A
Tssr104969 11 100859453 to 100859483 30 + TSS region transcription start site region 104969
Tssr104970 11 100859492 to 100859506 14 + TSS region transcription start site region 104970
Tssr104971 11 100859869 to 100859885 16 + TSS region transcription start site region 104971