Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:100350608-100767566

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hap1 11 100347327 to 100356128 8801 - protein coding gene huntingtin-associated protein 1
Gm20394 11 100349696 to 100350889 1193 - unclassified non-coding RNA gene predicted gene 20394
Tssr110788 11 100354125 to 100354143 18 - TSS region transcription start site region 110788
Cpgi3809 11 100355175 to 100356923 1748 CpG island CpG island 3809
Tssr110789 11 100355400 to 100355416 16 - TSS region transcription start site region 110789
Tssr110790 11 100356078 to 100356096 18 - TSS region transcription start site region 110790
Tssr110791 11 100356101 to 100356108 7 - TSS region transcription start site region 110791
Tssr110792 11 100356116 to 100356127 11 - TSS region transcription start site region 110792
Tssr110793 11 100356137 to 100356144 7 - TSS region transcription start site region 110793
Gm10039 11 100361716 to 100362126 410 - pseudogene predicted pseudogene 10039
Tssr110794 11 100362156 to 100362157 1 - TSS region transcription start site region 110794
Rvfs2 11 100363360 to 120996339 20632979 QTL Rift Valley fever susceptibility 2
Jup 11 100368958 to 100397763 28805 - protein coding gene junction plakoglobin
Tssr110795 11 100371244 to 100371279 35 - TSS region transcription start site region 110795
Tssr110796 11 100374193 to 100374211 18 - TSS region transcription start site region 110796
Tssr110797 11 100374367 to 100374385 18 - TSS region transcription start site region 110797
Tssr104934 11 100376309 to 100376324 15 + TSS region transcription start site region 104934
Tssr110798 11 100376861 to 100376878 17 - TSS region transcription start site region 110798
Tssr110799 11 100376884 to 100376903 19 - TSS region transcription start site region 110799
Tssr110800 11 100376920 to 100376940 20 - TSS region transcription start site region 110800
Tssr110801 11 100377104 to 100377158 54 - TSS region transcription start site region 110801
Tssr104935 11 100386179 to 100386205 26 + TSS region transcription start site region 104935
Tssr110802 11 100386758 to 100386791 33 - TSS region transcription start site region 110802
Cpgi3810 11 100396889 to 100398047 1158 CpG island CpG island 3810
Tssr110803 11 100397070 to 100397109 39 - TSS region transcription start site region 110803
Tssr110804 11 100397740 to 100397792 52 - TSS region transcription start site region 110804
Tssr3670 11 100397883 to 100397913 30 - TSS region transcription start site region 3670
Tssr3671 11 100400912 to 100400913 1 - TSS region transcription start site region 3671
Gm12348 11 100401508 to 100402252 744 + lncRNA gene predicted gene 12348
P3h4 11 100408748 to 100414819 6071 - protein coding gene prolyl 3-hydroxylase family member 4 (non-enzymatic)
Tssr110805 11 100411886 to 100411895 9 - TSS region transcription start site region 110805
Cpgi3811 11 100413503 to 100415239 1736 CpG island CpG island 3811
Tssr110806 11 100414673 to 100414744 71 - TSS region transcription start site region 110806
Tssr110807 11 100414777 to 100414811 34 - TSS region transcription start site region 110807
Tssr110808 11 100414829 to 100414852 23 - TSS region transcription start site region 110808
Tssr110809 11 100414857 to 100414872 15 - TSS region transcription start site region 110809
Tssr110810 11 100415191 to 100415202 11 - TSS region transcription start site region 110810
Cpgi3812 11 100415660 to 100415964 304 CpG island CpG island 3812
Fkbp10 11 100415697 to 100424824 9127 + protein coding gene FK506 binding protein 10
Tssr104936 11 100415715 to 100415720 5 + TSS region transcription start site region 104936
Tssr104937 11 100415722 to 100415763 41 + TSS region transcription start site region 104937
Nt5c3b 11 100422317 to 100441803 19486 - protein coding gene 5'-nucleotidase, cytosolic IIIB
Cpgi3813 11 100440668 to 100441306 638 CpG island CpG island 3813
Tssr110811 11 100440972 to 100440990 18 - TSS region transcription start site region 110811
Tssr110812 11 100441006 to 100441038 32 - TSS region transcription start site region 110812
Tssr110813 11 100441058 to 100441110 52 - TSS region transcription start site region 110813
Tssr110814 11 100441795 to 100441813 18 - TSS region transcription start site region 110814
Tssr110815 11 100441818 to 100441825 7 - TSS region transcription start site region 110815
Tssr110816 11 100441829 to 100441833 4 - TSS region transcription start site region 110816
Tssr104938 11 100441882 to 100441938 56 + TSS region transcription start site region 104938
Klhl10 11 100441917 to 100457022 15105 + protein coding gene kelch-like 10
Tssr104939 11 100441947 to 100441954 7 + TSS region transcription start site region 104939
Gm27374 11 100442395 to 100442475 80 - miRNA gene predicted gene, 27374
2610002J23Rik 11 100457122 to 100461692 4570 unclassified gene RIKEN cDNA 2610002J23 gene
Tssr110817 11 100461667 to 100461671 4 - TSS region transcription start site region 110817
Klhl11 11 100462614 to 100472741 10127 - protein coding gene kelch-like 11
Cpgi3814 11 100471892 to 100473164 1272 CpG island CpG island 3814
Tssr110818 11 100472725 to 100472759 34 - TSS region transcription start site region 110818
Tssr110819 11 100472762 to 100472767 5 - TSS region transcription start site region 110819
Tssr110820 11 100472772 to 100472788 16 - TSS region transcription start site region 110820
Tssr110821 11 100472794 to 100472811 17 - TSS region transcription start site region 110821
Acly 11 100476353 to 100528000 51647 - protein coding gene ATP citrate lyase
Tssr110822 11 100476729 to 100476732 3 - TSS region transcription start site region 110822
Tssr110823 11 100477086 to 100477113 27 - TSS region transcription start site region 110823
Mir7116 11 100478411 to 100478480 69 - miRNA gene microRNA 7116
Tssr110824 11 100494162 to 100494175 13 - TSS region transcription start site region 110824
Tssr110825 11 100494186 to 100494204 18 - TSS region transcription start site region 110825
Tssr110826 11 100516372 to 100516380 8 - TSS region transcription start site region 110826
Cpgi3815 11 100527048 to 100528568 1520 CpG island CpG island 3815
Tssr110827 11 100527862 to 100527878 16 - TSS region transcription start site region 110827
Tssr110828 11 100527896 to 100527916 20 - TSS region transcription start site region 110828
n-TSgga1 11 100538158 to 100538230 72 + tRNA gene nuclear encoded tRNA serine 1 (anticodon GGA)
Cpgi3816 11 100545421 to 100545945 524 CpG island CpG island 3816
Tssr110829 11 100545579 to 100545593 14 - TSS region transcription start site region 110829
Ttc25 11 100545632 to 100572566 26934 + protein coding gene tetratricopeptide repeat domain 25
Tssr104940 11 100545672 to 100545678 6 + TSS region transcription start site region 104940
Tssr104941 11 100545683 to 100545736 53 + TSS region transcription start site region 104941
Tssr104942 11 100553339 to 100553343 4 + TSS region transcription start site region 104942
Tssr104943 11 100553999 to 100554018 19 + TSS region transcription start site region 104943
Cpgi3817 11 100555794 to 100556115 321 CpG island CpG island 3817
Cpgi3818 11 100564372 to 100564704 332 CpG island CpG island 3818
Cpgi3819 11 100571234 to 100571412 178 CpG island CpG island 3819
Cpgi3820 11 100574733 to 100575392 659 CpG island CpG island 3820
Cnp 11 100574909 to 100591418 16509 + protein coding gene 2',3'-cyclic nucleotide 3' phosphodiesterase
Tssr104944 11 100574965 to 100574982 17 + TSS region transcription start site region 104944
Tssr104945 11 100575797 to 100575815 18 + TSS region transcription start site region 104945
Tssr104946 11 100575882 to 100575900 18 + TSS region transcription start site region 104946
Tssr104947 11 100580789 to 100580814 25 + TSS region transcription start site region 104947
Tssr104948 11 100580828 to 100580851 23 + TSS region transcription start site region 104948
Tssr104949 11 100580884 to 100580889 5 + TSS region transcription start site region 104949
Tssr104950 11 100581283 to 100581298 15 + TSS region transcription start site region 104950
Dnajc7 11 100582818 to 100620168 37350 - protein coding gene DnaJ heat shock protein family (Hsp40) member C7
Tssr110830 11 100583090 to 100583097 7 - TSS region transcription start site region 110830
Tssr110831 11 100583112 to 100583129 17 - TSS region transcription start site region 110831
Tssr110832 11 100584694 to 100584706 12 - TSS region transcription start site region 110832
Tssr110833 11 100584715 to 100584727 12 - TSS region transcription start site region 110833
Tssr110834 11 100584746 to 100584780 34 - TSS region transcription start site region 110834
Tssr110835 11 100591501 to 100591519 18 - TSS region transcription start site region 110835
Tssr110836 11 100610069 to 100610072 3 - TSS region transcription start site region 110836
Tssr110837 11 100613334 to 100613368 34 - TSS region transcription start site region 110837
Tssr110838 11 100613384 to 100613389 5 - TSS region transcription start site region 110838
Tssr110839 11 100613391 to 100613400 9 - TSS region transcription start site region 110839
Tssr110840 11 100613402 to 100613407 5 - TSS region transcription start site region 110840
Cpgi3821 11 100618887 to 100620092 1205 CpG island CpG island 3821
Tssr104951 11 100619217 to 100619283 66 + TSS region transcription start site region 104951
Tssr110841 11 100619593 to 100619596 3 - TSS region transcription start site region 110841
Tssr110842 11 100619598 to 100619657 59 - TSS region transcription start site region 110842
Tssr110843 11 100619674 to 100619685 11 - TSS region transcription start site region 110843
Tssr104952 11 100619729 to 100619760 31 + TSS region transcription start site region 104952
Nkiras2 11 100619856 to 100627610 7754 + protein coding gene NFKB inhibitor interacting Ras-like protein 2
Tssr110844 11 100620165 to 100620209 44 - TSS region transcription start site region 110844
Cpgi3822 11 100622692 to 100623290 598 CpG island CpG island 3822
Tssr3672 11 100622861 to 100622868 7 + TSS region transcription start site region 3672
Tssr104953 11 100622870 to 100622881 11 + TSS region transcription start site region 104953
Tssr104954 11 100622883 to 100622920 37 + TSS region transcription start site region 104954
Tssr104955 11 100622921 to 100622970 49 + TSS region transcription start site region 104955
Tssr104956 11 100622971 to 100622987 16 + TSS region transcription start site region 104956
Tssr104957 11 100624082 to 100624100 18 + TSS region transcription start site region 104957
Tssr104958 11 100626902 to 100626920 18 + TSS region transcription start site region 104958
Zfp385c 11 100627543 to 100692455 64912 - protein coding gene zinc finger protein 385C
Cpgi3823 11 100639932 to 100640901 969 CpG island CpG island 3823
Gm44544 11 100639944 to 100643117 3173 - pseudogene predicted gene 44544
Tssr110845 11 100650711 to 100650749 38 - TSS region transcription start site region 110845
Cpgi3824 11 100657328 to 100657544 216 CpG island CpG island 3824
Cpgi3825 11 100673145 to 100673410 265 CpG island CpG island 3825
Dhx58os 11 100687417 to 100697520 10103 + antisense lncRNA gene DEAH (Asp-Glu-Ala-His) box polypeptide 58, opposite strand
Gm38483 11 100689738 to 100697529 7791 + lncRNA gene predicted gene, 38483
Cpgi3826 11 100692155 to 100692316 161 CpG island CpG island 3826
Tssr110846 11 100692440 to 100692473 33 - TSS region transcription start site region 110846
Dhx58 11 100694884 to 100704271 9387 - protein coding gene DEXH (Asp-Glu-X-His) box polypeptide 58
Cpgi3827 11 100701229 to 100701437 208 CpG island CpG island 3827
Tssr110847 11 100701411 to 100701447 36 - TSS region transcription start site region 110847
Tssr110848 11 100703714 to 100703733 19 - TSS region transcription start site region 110848
Tssr110849 11 100704065 to 100704077 12 - TSS region transcription start site region 110849
Tssr110850 11 100704217 to 100704276 59 - TSS region transcription start site region 110850
Kat2a 11 100704746 to 100712465 7719 - protein coding gene K(lysine) acetyltransferase 2A
Cpgi3828 11 100711848 to 100712773 925 CpG island CpG island 3828
Tssr110851 11 100712346 to 100712355 9 - TSS region transcription start site region 110851
Tssr110852 11 100712429 to 100712476 47 - TSS region transcription start site region 110852
Cpgi3829 11 100713626 to 100714411 785 CpG island CpG island 3829
Hspb9 11 100713850 to 100714575 725 + protein coding gene heat shock protein, alpha-crystallin-related, B9
Tssr104959 11 100713917 to 100713938 21 + TSS region transcription start site region 104959
Tssr104960 11 100713954 to 100713965 11 + TSS region transcription start site region 104960
Rab5c 11 100715009 to 100738215 23206 - protein coding gene RAB5C, member RAS oncogene family
Tssr104961 11 100715265 to 100715273 8 + TSS region transcription start site region 104961
Tssr110853 11 100715354 to 100715376 22 - TSS region transcription start site region 110853
Tssr110854 11 100715774 to 100715801 27 - TSS region transcription start site region 110854
Tssr110855 11 100715884 to 100715894 10 - TSS region transcription start site region 110855
Tssr110856 11 100716012 to 100716053 41 - TSS region transcription start site region 110856
Tssr110857 11 100718568 to 100718587 19 - TSS region transcription start site region 110857
Tssr110858 11 100720109 to 100720127 18 - TSS region transcription start site region 110858
Tssr110859 11 100720144 to 100720155 11 - TSS region transcription start site region 110859
Tssr110860 11 100721314 to 100721320 6 - TSS region transcription start site region 110860
Tssr110861 11 100724224 to 100724256 32 - TSS region transcription start site region 110861
Tssr110862 11 100724280 to 100724291 11 - TSS region transcription start site region 110862
Tssr104962 11 100736223 to 100736235 12 + TSS region transcription start site region 104962
Tssr104963 11 100736254 to 100736280 26 + TSS region transcription start site region 104963
Cpgi3830 11 100737902 to 100738708 806 CpG island CpG island 3830
Tssr110863 11 100738114 to 100738140 26 - TSS region transcription start site region 110863
Tssr110864 11 100738153 to 100738212 59 - TSS region transcription start site region 110864
Kcnh4 11 100740376 to 100759942 19566 - protein coding gene potassium voltage-gated channel, subfamily H (eag-related), member 4
Cpgi3831 11 100749420 to 100750501 1081 CpG island CpG island 3831
Tssr110865 11 100752905 to 100752907 2 - TSS region transcription start site region 110865
Cpgi3832 11 100759272 to 100760174 902 CpG island CpG island 3832
Tssr110866 11 100759741 to 100759754 13 - TSS region transcription start site region 110866
Tssr110867 11 100759995 to 100760011 16 - TSS region transcription start site region 110867
Cpgi3833 11 100761604 to 100762286 682 CpG island CpG island 3833
Hcrt 11 100761693 to 100762931 1238 - protein coding gene hypocretin
Tssr110868 11 100762931 to 100762936 5 - TSS region transcription start site region 110868
Ghdc 11 100766032 to 100770957 4925 - protein coding gene GH3 domain containing