Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:100261920-100491940

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Krt42 11 100262882 to 100269871 6989 - protein coding gene keratin 42
Tssr110777 11 100265052 to 100265059 7 - TSS region transcription start site region 110777
Tssr110778 11 100265076 to 100265085 9 - TSS region transcription start site region 110778
Tssr110779 11 100265894 to 100265907 13 - TSS region transcription start site region 110779
Tssr110780 11 100265913 to 100265927 14 - TSS region transcription start site region 110780
Tssr110781 11 100265931 to 100265950 19 - TSS region transcription start site region 110781
Tssr110782 11 100265973 to 100265991 18 - TSS region transcription start site region 110782
Tssr110783 11 100269897 to 100269901 4 - TSS region transcription start site region 110783
Tssr110784 11 100269945 to 100269957 12 - TSS region transcription start site region 110784
Tssr110785 11 100274736 to 100274742 6 - TSS region transcription start site region 110785
Gm14206 11 100278706 to 100291286 12580 - antisense lncRNA gene predicted gene 14206
Gm12349 11 100291671 to 100293711 2040 + lincRNA gene predicted gene 12349
Cpgi3806 11 100295275 to 100295552 277 CpG island CpG island 3806
Cpgi3807 11 100298119 to 100298536 417 CpG island CpG island 3807
Tssr104921 11 100317650 to 100317658 8 + TSS region transcription start site region 104921
Cpgi3808 11 100319450 to 100320604 1154 CpG island CpG island 3808
Tssr104922 11 100319843 to 100319850 7 + TSS region transcription start site region 104922
Tssr104923 11 100319861 to 100319866 5 + TSS region transcription start site region 104923
Tssr104924 11 100319871 to 100319878 7 + TSS region transcription start site region 104924
Tssr104925 11 100319880 to 100319905 25 + TSS region transcription start site region 104925
Tssr104926 11 100319920 to 100319951 31 + TSS region transcription start site region 104926
Eif1 11 100319949 to 100322099 2150 + protein coding gene eukaryotic translation initiation factor 1
Tssr104927 11 100319955 to 100319962 7 + TSS region transcription start site region 104927
Tssr104928 11 100319973 to 100319988 15 + TSS region transcription start site region 104928
Tssr104929 11 100320037 to 100320057 20 + TSS region transcription start site region 104929
Tssr110786 11 100320378 to 100320383 5 - TSS region transcription start site region 110786
Tssr104930 11 100320493 to 100320515 22 + TSS region transcription start site region 104930
Tssr104931 11 100320538 to 100320594 56 + TSS region transcription start site region 104931
Tssr104932 11 100320596 to 100320623 27 + TSS region transcription start site region 104932
Tssr110787 11 100323043 to 100323049 6 - TSS region transcription start site region 110787
Tssr104933 11 100334407 to 100334414 7 + TSS region transcription start site region 104933
Corn2 11 100334407 to 101080527 746120 heritable phenotypic marker corneal disease 2
Gast 11 100334407 to 100336996 2589 + protein coding gene gastrin
Hap1 11 100347327 to 100356128 8801 - protein coding gene huntingtin-associated protein 1
Gm20394 11 100349696 to 100350889 1193 - unclassified non-coding RNA gene predicted gene 20394
Tssr110788 11 100354125 to 100354143 18 - TSS region transcription start site region 110788
Cpgi3809 11 100355175 to 100356923 1748 CpG island CpG island 3809
Tssr110789 11 100355400 to 100355416 16 - TSS region transcription start site region 110789
Tssr110790 11 100356078 to 100356096 18 - TSS region transcription start site region 110790
Tssr110791 11 100356101 to 100356108 7 - TSS region transcription start site region 110791
Tssr110792 11 100356116 to 100356127 11 - TSS region transcription start site region 110792
Tssr110793 11 100356137 to 100356144 7 - TSS region transcription start site region 110793
Gm10039 11 100361716 to 100362126 410 - pseudogene predicted pseudogene 10039
Tssr110794 11 100362156 to 100362157 1 - TSS region transcription start site region 110794
Rvfs2 11 100363360 to 120996339 20632979 QTL Rift Valley fever susceptibility 2
Jup 11 100368958 to 100397763 28805 - protein coding gene junction plakoglobin
Tssr110795 11 100371244 to 100371279 35 - TSS region transcription start site region 110795
Tssr110796 11 100374193 to 100374211 18 - TSS region transcription start site region 110796
Tssr110797 11 100374367 to 100374385 18 - TSS region transcription start site region 110797
Tssr104934 11 100376309 to 100376324 15 + TSS region transcription start site region 104934
Tssr110798 11 100376861 to 100376878 17 - TSS region transcription start site region 110798
Tssr110799 11 100376884 to 100376903 19 - TSS region transcription start site region 110799
Tssr110800 11 100376920 to 100376940 20 - TSS region transcription start site region 110800
Tssr110801 11 100377104 to 100377158 54 - TSS region transcription start site region 110801
Tssr104935 11 100386179 to 100386205 26 + TSS region transcription start site region 104935
Tssr110802 11 100386758 to 100386791 33 - TSS region transcription start site region 110802
Cpgi3810 11 100396889 to 100398047 1158 CpG island CpG island 3810
Tssr110803 11 100397070 to 100397109 39 - TSS region transcription start site region 110803
Tssr110804 11 100397740 to 100397792 52 - TSS region transcription start site region 110804
Tssr3670 11 100397883 to 100397913 30 - TSS region transcription start site region 3670
Tssr3671 11 100400912 to 100400913 1 - TSS region transcription start site region 3671
Gm12348 11 100401508 to 100402252 744 + lncRNA gene predicted gene 12348
P3h4 11 100408748 to 100414819 6071 - protein coding gene prolyl 3-hydroxylase family member 4 (non-enzymatic)
Tssr110805 11 100411886 to 100411895 9 - TSS region transcription start site region 110805
Cpgi3811 11 100413503 to 100415239 1736 CpG island CpG island 3811
Tssr110806 11 100414673 to 100414744 71 - TSS region transcription start site region 110806
Tssr110807 11 100414777 to 100414811 34 - TSS region transcription start site region 110807
Tssr110808 11 100414829 to 100414852 23 - TSS region transcription start site region 110808
Tssr110809 11 100414857 to 100414872 15 - TSS region transcription start site region 110809
Tssr110810 11 100415191 to 100415202 11 - TSS region transcription start site region 110810
Cpgi3812 11 100415660 to 100415964 304 CpG island CpG island 3812
Fkbp10 11 100415697 to 100424824 9127 + protein coding gene FK506 binding protein 10
Tssr104936 11 100415715 to 100415720 5 + TSS region transcription start site region 104936
Tssr104937 11 100415722 to 100415763 41 + TSS region transcription start site region 104937
Nt5c3b 11 100422317 to 100441803 19486 - protein coding gene 5'-nucleotidase, cytosolic IIIB
Cpgi3813 11 100440668 to 100441306 638 CpG island CpG island 3813
Tssr110811 11 100440972 to 100440990 18 - TSS region transcription start site region 110811
Tssr110812 11 100441006 to 100441038 32 - TSS region transcription start site region 110812
Tssr110813 11 100441058 to 100441110 52 - TSS region transcription start site region 110813
Tssr110814 11 100441795 to 100441813 18 - TSS region transcription start site region 110814
Tssr110815 11 100441818 to 100441825 7 - TSS region transcription start site region 110815
Tssr110816 11 100441829 to 100441833 4 - TSS region transcription start site region 110816
Tssr104938 11 100441882 to 100441938 56 + TSS region transcription start site region 104938
Klhl10 11 100441917 to 100457022 15105 + protein coding gene kelch-like 10
Tssr104939 11 100441947 to 100441954 7 + TSS region transcription start site region 104939
Gm27374 11 100442395 to 100442475 80 - miRNA gene predicted gene, 27374
2610002J23Rik 11 100457122 to 100461692 4570 unclassified gene RIKEN cDNA 2610002J23 gene
Tssr110817 11 100461667 to 100461671 4 - TSS region transcription start site region 110817
Klhl11 11 100462614 to 100472741 10127 - protein coding gene kelch-like 11
Cpgi3814 11 100471892 to 100473164 1272 CpG island CpG island 3814
Tssr110818 11 100472725 to 100472759 34 - TSS region transcription start site region 110818
Tssr110819 11 100472762 to 100472767 5 - TSS region transcription start site region 110819
Tssr110820 11 100472772 to 100472788 16 - TSS region transcription start site region 110820
Tssr110821 11 100472794 to 100472811 17 - TSS region transcription start site region 110821
Acly 11 100476353 to 100528000 51647 - protein coding gene ATP citrate lyase
Tssr110822 11 100476729 to 100476732 3 - TSS region transcription start site region 110822
Tssr110823 11 100477086 to 100477113 27 - TSS region transcription start site region 110823
Mir7116 11 100478411 to 100478480 69 - miRNA gene microRNA 7116