Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:100121693-101402931

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562 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr110741 11 100121704 to 100121711 7 - TSS region transcription start site region 110741
Tssr104900 11 100129299 to 100129305 6 + TSS region transcription start site region 104900
30.MMHAP38FLB6.seq 11 100129813 to 100129974 161 DNA segment DNA segment, 30.MMHAP38FLB6.seq
Krt15 11 100131758 to 100135928 4170 - protein coding gene keratin 15
Tssr104901 11 100133634 to 100133676 42 + TSS region transcription start site region 104901
Tssr104902 11 100133678 to 100133699 21 + TSS region transcription start site region 104902
Tssr104903 11 100133760 to 100133771 11 + TSS region transcription start site region 104903
Tssr110742 11 100134496 to 100134552 56 - TSS region transcription start site region 110742
Tssr104904 11 100135377 to 100135421 44 + TSS region transcription start site region 104904
Tssr104905 11 100135466 to 100135482 16 + TSS region transcription start site region 104905
Tssr110743 11 100135501 to 100135528 27 - TSS region transcription start site region 110743
Tssr110744 11 100135939 to 100135954 15 - TSS region transcription start site region 110744
Tssr110745 11 100136049 to 100136087 38 - TSS region transcription start site region 110745
Tssr110746 11 100137768 to 100137787 19 - TSS region transcription start site region 110746
Tssr104906 11 100140590 to 100140593 3 + TSS region transcription start site region 104906
Krt19 11 100140810 to 100145926 5116 - protein coding gene keratin 19
Tssr104907 11 100140814 to 100140817 3 + TSS region transcription start site region 104907
Tssr110747 11 100140852 to 100140875 23 - TSS region transcription start site region 110747
Tssr104908 11 100140895 to 100140917 22 + TSS region transcription start site region 104908
Tssr104909 11 100140923 to 100140958 35 + TSS region transcription start site region 104909
Tssr104910 11 100141000 to 100141013 13 + TSS region transcription start site region 104910
Tssr110748 11 100141011 to 100141158 147 - TSS region transcription start site region 110748
Cpgi3804 11 100141024 to 100141210 186 CpG island CpG island 3804
Tssr104911 11 100141321 to 100141362 41 + TSS region transcription start site region 104911
Tssr104912 11 100141524 to 100141567 43 + TSS region transcription start site region 104912
Tssr110749 11 100141547 to 100141593 46 - TSS region transcription start site region 110749
Tssr110750 11 100141628 to 100141646 18 - TSS region transcription start site region 110750
Tssr110751 11 100141678 to 100141690 12 - TSS region transcription start site region 110751
Tssr110752 11 100141827 to 100141857 30 - TSS region transcription start site region 110752
Tssr110753 11 100142127 to 100142151 24 - TSS region transcription start site region 110753
Tssr110754 11 100142186 to 100142208 22 - TSS region transcription start site region 110754
D11Mit1003 11 100143011 to 100143274 263 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 1003
Tssr110755 11 100143563 to 100143587 24 - TSS region transcription start site region 110755
Tssr110756 11 100143705 to 100143742 37 - TSS region transcription start site region 110756
D11Mit59.2 11 100144456 to 100144614 158 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 59.2
D11Mit59 11 100144564 to 100144799 235 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 59
D11Mit59.1 11 100144730 to 100144848 118 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 59.1
Cpgi3805 11 100145263 to 100145898 635 CpG island CpG island 3805
Tssr104913 11 100145449 to 100145474 25 + TSS region transcription start site region 104913
Tssr104914 11 100145550 to 100145559 9 + TSS region transcription start site region 104914
Tssr104915 11 100145577 to 100145626 49 + TSS region transcription start site region 104915
Tssr110757 11 100145918 to 100145935 17 - TSS region transcription start site region 110757
Tssr110758 11 100145941 to 100145946 5 - TSS region transcription start site region 110758
Tssr110759 11 100145966 to 100145978 12 - TSS region transcription start site region 110759
Tssr104916 11 100164647 to 100164654 7 + TSS region transcription start site region 104916
Gm39022 11 100166772 to 100181390 14618 + lncRNA gene predicted gene, 39022
Krt9 11 100186781 to 100193246 6465 - protein coding gene keratin 9
Tssr110760 11 100193099 to 100193103 4 - TSS region transcription start site region 110760
Tssr110761 11 100193253 to 100193256 3 - TSS region transcription start site region 110761
Krt14 11 100203162 to 100207510 4348 - protein coding gene keratin 14
Tssr110762 11 100203188 to 100203201 13 - TSS region transcription start site region 110762
Tssr110763 11 100203219 to 100203248 29 - TSS region transcription start site region 110763
Tssr110764 11 100204281 to 100204302 21 - TSS region transcription start site region 110764
Tssr104917 11 100204749 to 100204763 14 + TSS region transcription start site region 104917
Tssr110765 11 100206065 to 100206094 29 - TSS region transcription start site region 110765
Tssr104918 11 100206457 to 100206475 18 + TSS region transcription start site region 104918
Tssr104919 11 100206750 to 100206757 7 + TSS region transcription start site region 104919
Tssr110766 11 100207319 to 100207354 35 - TSS region transcription start site region 110766
Tssr110767 11 100207402 to 100207436 34 - TSS region transcription start site region 110767
Tssr110768 11 100207507 to 100207526 19 - TSS region transcription start site region 110768
Tssr110769 11 100207654 to 100207664 10 - TSS region transcription start site region 110769
Gm11597 11 100228845 to 100232078 3233 - pseudogene predicted gene 11597
Tssr104920 11 100243254 to 100243267 13 + TSS region transcription start site region 104920
Gm11598 11 100243273 to 100243629 356 + pseudogene predicted gene 11598
Krt16 11 100246091 to 100248902 2811 - protein coding gene keratin 16
Tssr110770 11 100246116 to 100246159 43 - TSS region transcription start site region 110770
Tssr110771 11 100246212 to 100246226 14 - TSS region transcription start site region 110771
Tssr110772 11 100247629 to 100247663 34 - TSS region transcription start site region 110772
Tssr110773 11 100248953 to 100248969 16 - TSS region transcription start site region 110773
Krt17 11 100256217 to 100261029 4812 - protein coding gene keratin 17
Tssr110774 11 100258067 to 100258079 12 - TSS region transcription start site region 110774
Tssr110775 11 100258112 to 100258118 6 - TSS region transcription start site region 110775
Tssr110776 11 100261021 to 100261036 15 - TSS region transcription start site region 110776
Krt42 11 100262882 to 100269871 6989 - protein coding gene keratin 42
Tssr110777 11 100265052 to 100265059 7 - TSS region transcription start site region 110777
Tssr110778 11 100265076 to 100265085 9 - TSS region transcription start site region 110778
Tssr110779 11 100265894 to 100265907 13 - TSS region transcription start site region 110779
Tssr110780 11 100265913 to 100265927 14 - TSS region transcription start site region 110780
Tssr110781 11 100265931 to 100265950 19 - TSS region transcription start site region 110781
Tssr110782 11 100265973 to 100265991 18 - TSS region transcription start site region 110782
Tssr110783 11 100269897 to 100269901 4 - TSS region transcription start site region 110783
Tssr110784 11 100269945 to 100269957 12 - TSS region transcription start site region 110784
Tssr110785 11 100274736 to 100274742 6 - TSS region transcription start site region 110785
Gm14206 11 100278706 to 100291286 12580 - antisense lncRNA gene predicted gene 14206
Gm12349 11 100291671 to 100293711 2040 + lincRNA gene predicted gene 12349
Cpgi3806 11 100295275 to 100295552 277 CpG island CpG island 3806
Cpgi3807 11 100298119 to 100298536 417 CpG island CpG island 3807
Tssr104921 11 100317650 to 100317658 8 + TSS region transcription start site region 104921
Cpgi3808 11 100319450 to 100320604 1154 CpG island CpG island 3808
Tssr104922 11 100319843 to 100319850 7 + TSS region transcription start site region 104922
Tssr104923 11 100319861 to 100319866 5 + TSS region transcription start site region 104923
Tssr104924 11 100319871 to 100319878 7 + TSS region transcription start site region 104924
Tssr104925 11 100319880 to 100319905 25 + TSS region transcription start site region 104925
Tssr104926 11 100319920 to 100319951 31 + TSS region transcription start site region 104926
Eif1 11 100319949 to 100322099 2150 + protein coding gene eukaryotic translation initiation factor 1
Tssr104927 11 100319955 to 100319962 7 + TSS region transcription start site region 104927
Tssr104928 11 100319973 to 100319988 15 + TSS region transcription start site region 104928
Tssr104929 11 100320037 to 100320057 20 + TSS region transcription start site region 104929
Tssr110786 11 100320378 to 100320383 5 - TSS region transcription start site region 110786
Tssr104930 11 100320493 to 100320515 22 + TSS region transcription start site region 104930
Tssr104931 11 100320538 to 100320594 56 + TSS region transcription start site region 104931
Tssr104932 11 100320596 to 100320623 27 + TSS region transcription start site region 104932
Tssr110787 11 100323043 to 100323049 6 - TSS region transcription start site region 110787
Tssr104933 11 100334407 to 100334414 7 + TSS region transcription start site region 104933
Corn2 11 100334407 to 101080527 746120 heritable phenotypic marker corneal disease 2
Gast 11 100334407 to 100336996 2589 + protein coding gene gastrin
Hap1 11 100347327 to 100356128 8801 - protein coding gene huntingtin-associated protein 1
Gm20394 11 100349696 to 100350889 1193 - unclassified non-coding RNA gene predicted gene 20394
Tssr110788 11 100354125 to 100354143 18 - TSS region transcription start site region 110788
Cpgi3809 11 100355175 to 100356923 1748 CpG island CpG island 3809
Tssr110789 11 100355400 to 100355416 16 - TSS region transcription start site region 110789
Tssr110790 11 100356078 to 100356096 18 - TSS region transcription start site region 110790
Tssr110791 11 100356101 to 100356108 7 - TSS region transcription start site region 110791
Tssr110792 11 100356116 to 100356127 11 - TSS region transcription start site region 110792
Tssr110793 11 100356137 to 100356144 7 - TSS region transcription start site region 110793
Gm10039 11 100361716 to 100362126 410 - pseudogene predicted pseudogene 10039
Tssr110794 11 100362156 to 100362157 1 - TSS region transcription start site region 110794
Rvfs2 11 100363360 to 120996339 20632979 QTL Rift Valley fever susceptibility 2
Jup 11 100368958 to 100397763 28805 - protein coding gene junction plakoglobin
Tssr110795 11 100371244 to 100371279 35 - TSS region transcription start site region 110795
Tssr110796 11 100374193 to 100374211 18 - TSS region transcription start site region 110796
Tssr110797 11 100374367 to 100374385 18 - TSS region transcription start site region 110797
Tssr104934 11 100376309 to 100376324 15 + TSS region transcription start site region 104934
Tssr110798 11 100376861 to 100376878 17 - TSS region transcription start site region 110798
Tssr110799 11 100376884 to 100376903 19 - TSS region transcription start site region 110799
Tssr110800 11 100376920 to 100376940 20 - TSS region transcription start site region 110800
Tssr110801 11 100377104 to 100377158 54 - TSS region transcription start site region 110801
Tssr104935 11 100386179 to 100386205 26 + TSS region transcription start site region 104935
Tssr110802 11 100386758 to 100386791 33 - TSS region transcription start site region 110802
Cpgi3810 11 100396889 to 100398047 1158 CpG island CpG island 3810
Tssr110803 11 100397070 to 100397109 39 - TSS region transcription start site region 110803
Tssr110804 11 100397740 to 100397792 52 - TSS region transcription start site region 110804
Tssr3670 11 100397883 to 100397913 30 - TSS region transcription start site region 3670
Tssr3671 11 100400912 to 100400913 1 - TSS region transcription start site region 3671
Gm12348 11 100401508 to 100402252 744 + lncRNA gene predicted gene 12348
P3h4 11 100408748 to 100414819 6071 - protein coding gene prolyl 3-hydroxylase family member 4 (non-enzymatic)
Tssr110805 11 100411886 to 100411895 9 - TSS region transcription start site region 110805
Cpgi3811 11 100413503 to 100415239 1736 CpG island CpG island 3811
Tssr110806 11 100414673 to 100414744 71 - TSS region transcription start site region 110806
Tssr110807 11 100414777 to 100414811 34 - TSS region transcription start site region 110807
Tssr110808 11 100414829 to 100414852 23 - TSS region transcription start site region 110808
Tssr110809 11 100414857 to 100414872 15 - TSS region transcription start site region 110809
Tssr110810 11 100415191 to 100415202 11 - TSS region transcription start site region 110810
Cpgi3812 11 100415660 to 100415964 304 CpG island CpG island 3812
Fkbp10 11 100415697 to 100424824 9127 + protein coding gene FK506 binding protein 10
Tssr104936 11 100415715 to 100415720 5 + TSS region transcription start site region 104936
Tssr104937 11 100415722 to 100415763 41 + TSS region transcription start site region 104937
Nt5c3b 11 100422317 to 100441803 19486 - protein coding gene 5'-nucleotidase, cytosolic IIIB
Cpgi3813 11 100440668 to 100441306 638 CpG island CpG island 3813
Tssr110811 11 100440972 to 100440990 18 - TSS region transcription start site region 110811
Tssr110812 11 100441006 to 100441038 32 - TSS region transcription start site region 110812
Tssr110813 11 100441058 to 100441110 52 - TSS region transcription start site region 110813
Tssr110814 11 100441795 to 100441813 18 - TSS region transcription start site region 110814
Tssr110815 11 100441818 to 100441825 7 - TSS region transcription start site region 110815
Tssr110816 11 100441829 to 100441833 4 - TSS region transcription start site region 110816
Tssr104938 11 100441882 to 100441938 56 + TSS region transcription start site region 104938
Klhl10 11 100441917 to 100457022 15105 + protein coding gene kelch-like 10
Tssr104939 11 100441947 to 100441954 7 + TSS region transcription start site region 104939
Gm27374 11 100442395 to 100442475 80 - miRNA gene predicted gene, 27374
2610002J23Rik 11 100457122 to 100461692 4570 unclassified gene RIKEN cDNA 2610002J23 gene
Tssr110817 11 100461667 to 100461671 4 - TSS region transcription start site region 110817
Klhl11 11 100462614 to 100472741 10127 - protein coding gene kelch-like 11
Cpgi3814 11 100471892 to 100473164 1272 CpG island CpG island 3814
Tssr110818 11 100472725 to 100472759 34 - TSS region transcription start site region 110818
Tssr110819 11 100472762 to 100472767 5 - TSS region transcription start site region 110819
Tssr110820 11 100472772 to 100472788 16 - TSS region transcription start site region 110820
Tssr110821 11 100472794 to 100472811 17 - TSS region transcription start site region 110821
Acly 11 100476353 to 100528000 51647 - protein coding gene ATP citrate lyase
Tssr110822 11 100476729 to 100476732 3 - TSS region transcription start site region 110822
Tssr110823 11 100477086 to 100477113 27 - TSS region transcription start site region 110823
Mir7116 11 100478411 to 100478480 69 - miRNA gene microRNA 7116
Tssr110824 11 100494162 to 100494175 13 - TSS region transcription start site region 110824
Tssr110825 11 100494186 to 100494204 18 - TSS region transcription start site region 110825
Tssr110826 11 100516372 to 100516380 8 - TSS region transcription start site region 110826
Cpgi3815 11 100527048 to 100528568 1520 CpG island CpG island 3815
Tssr110827 11 100527862 to 100527878 16 - TSS region transcription start site region 110827
Tssr110828 11 100527896 to 100527916 20 - TSS region transcription start site region 110828
n-TSgga1 11 100538158 to 100538230 72 + tRNA gene nuclear encoded tRNA serine 1 (anticodon GGA)
Cpgi3816 11 100545421 to 100545945 524 CpG island CpG island 3816
Tssr110829 11 100545579 to 100545593 14 - TSS region transcription start site region 110829
Ttc25 11 100545632 to 100572566 26934 + protein coding gene tetratricopeptide repeat domain 25
Tssr104940 11 100545672 to 100545678 6 + TSS region transcription start site region 104940
Tssr104941 11 100545683 to 100545736 53 + TSS region transcription start site region 104941
Tssr104942 11 100553339 to 100553343 4 + TSS region transcription start site region 104942
Tssr104943 11 100553999 to 100554018 19 + TSS region transcription start site region 104943
Cpgi3817 11 100555794 to 100556115 321 CpG island CpG island 3817
Cpgi3818 11 100564372 to 100564704 332 CpG island CpG island 3818
Cpgi3819 11 100571234 to 100571412 178 CpG island CpG island 3819
Cpgi3820 11 100574733 to 100575392 659 CpG island CpG island 3820
Cnp 11 100574909 to 100591418 16509 + protein coding gene 2',3'-cyclic nucleotide 3' phosphodiesterase
Tssr104944 11 100574965 to 100574982 17 + TSS region transcription start site region 104944
Tssr104945 11 100575797 to 100575815 18 + TSS region transcription start site region 104945
Tssr104946 11 100575882 to 100575900 18 + TSS region transcription start site region 104946
Tssr104947 11 100580789 to 100580814 25 + TSS region transcription start site region 104947
Tssr104948 11 100580828 to 100580851 23 + TSS region transcription start site region 104948
Tssr104949 11 100580884 to 100580889 5 + TSS region transcription start site region 104949
Tssr104950 11 100581283 to 100581298 15 + TSS region transcription start site region 104950
Dnajc7 11 100582818 to 100620168 37350 - protein coding gene DnaJ heat shock protein family (Hsp40) member C7
Tssr110830 11 100583090 to 100583097 7 - TSS region transcription start site region 110830
Tssr110831 11 100583112 to 100583129 17 - TSS region transcription start site region 110831